Wall clock time and date at job start Sat Apr 11 2020 06:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46502 * 109.47366 * 2 1 4 4 C 1.46493 * 120.00238 * 275.00203 * 3 2 1 5 5 C 1.50702 * 109.47177 * 274.99734 * 4 3 2 6 6 H 1.08000 * 119.99644 * 0.02562 * 5 4 3 7 7 C 1.37870 * 119.99813 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99896 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00506 * 0.02562 * 7 5 4 10 10 H 1.48505 * 109.47081 * 89.99774 * 9 7 5 11 11 H 1.48496 * 109.47387 * 210.00030 * 9 7 5 12 12 H 1.48505 * 109.46858 * 329.99999 * 9 7 5 13 13 S 1.65600 * 119.99857 * 94.99906 * 3 2 1 14 14 O 1.42094 * 106.40328 * 156.46576 * 13 3 2 15 15 O 1.42099 * 106.40328 * 23.53994 * 13 3 2 16 16 N 1.65599 * 107.21947 * 270.00225 * 13 3 2 17 17 C 1.48086 * 127.84985 * 89.97517 * 16 13 3 18 18 C 1.54251 * 104.79993 * 140.05746 * 17 16 13 19 19 H 1.08996 * 113.03316 * 260.36868 * 18 17 16 20 20 C 1.56095 * 108.57835 * 134.04671 * 18 17 16 21 21 H 1.08998 * 116.23584 * 86.01210 * 20 18 17 22 22 C 1.53347 * 104.15484 * 315.84290 * 20 18 17 23 23 C 1.31788 * 108.42729 * 289.74487 * 22 20 18 24 24 C 1.53350 * 108.41090 * 0.02562 * 23 22 20 25 25 H 1.09005 * 116.92535 * 199.99623 * 24 23 22 26 26 C 1.57213 * 100.49148 * 212.78640 * 20 18 17 27 27 C 1.55786 * 104.66346 * 24.01184 * 18 17 16 28 28 C 1.53006 * 113.21291 * 236.50827 * 27 18 17 29 29 C 1.48087 * 127.85367 * 269.97679 * 16 13 3 30 30 H 1.08999 * 109.47298 * 299.99766 * 1 2 3 31 31 H 1.09001 * 109.47470 * 59.99748 * 1 2 3 32 32 H 1.09009 * 109.47052 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47298 * 240.00234 * 2 1 3 34 34 H 1.09001 * 109.47470 * 120.00252 * 2 1 3 35 35 H 1.09004 * 109.47007 * 34.99885 * 4 3 2 36 36 H 1.09003 * 109.47027 * 154.99542 * 4 3 2 37 37 H 0.97004 * 120.00210 * 179.97438 * 8 7 5 38 38 H 1.09003 * 110.37303 * 21.22098 * 17 16 13 39 39 H 1.09006 * 110.37186 * 258.88515 * 17 16 13 40 40 H 1.08001 * 125.78320 * 109.74148 * 22 20 18 41 41 H 1.08000 * 125.79463 * 180.02562 * 23 22 20 42 42 H 1.08999 * 112.52789 * 173.22606 * 26 20 18 43 43 H 1.09002 * 112.52524 * 300.99411 * 26 20 18 44 44 H 1.09001 * 109.46801 * 60.00105 * 28 27 18 45 45 H 1.09001 * 109.46998 * 179.97438 * 28 27 18 46 46 H 1.09000 * 109.47050 * 299.99993 * 28 27 18 47 47 H 1.09007 * 110.37141 * 101.13448 * 29 16 13 48 48 H 1.08990 * 110.36935 * 338.79755 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 -1.2638 5 6 3.4948 1.7889 -1.8823 6 1 4.1720 1.1111 -1.3839 7 6 3.8524 2.3607 -3.0847 8 7 5.0186 2.0812 -3.6247 9 14 2.6808 3.5324 -3.9471 10 1 2.9452 4.9210 -3.4919 11 1 2.8852 3.4454 -5.4153 12 1 1.2804 3.1623 -3.6194 13 16 2.4122 2.1202 1.4287 14 8 3.3283 3.1570 1.1050 15 8 2.7094 1.0799 2.3499 16 7 1.0431 2.8642 1.9895 17 6 0.0021 2.3005 2.8792 18 6 -0.3637 3.4529 3.8370 19 1 0.1245 3.3716 4.8082 20 6 -1.9189 3.5398 3.9393 21 1 -2.3899 2.8937 4.6802 22 6 -2.3985 3.3989 2.4896 23 6 -2.0716 4.4945 1.8343 24 6 -1.3509 5.4409 2.8021 25 1 -1.3143 6.4949 2.5264 26 6 -2.1069 5.0883 4.1351 27 6 0.0227 4.7478 3.0619 28 6 1.0080 5.6358 3.8245 29 6 0.5816 4.2443 1.7153 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0278 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.3617 1.8098 -1.9452 36 1 2.0921 3.1803 -1.0754 37 1 5.2701 2.4832 -4.4709 38 1 0.3992 1.4535 3.4388 39 1 -0.8697 1.9980 2.2991 40 1 -2.9164 2.5462 2.0758 41 1 -2.2764 4.6924 0.7925 42 1 -3.1546 5.3879 4.1130 43 1 -1.5923 5.4628 5.0201 44 1 1.9260 5.0798 4.0148 45 1 1.2359 6.5201 3.2293 46 1 0.5643 5.9400 4.7725 47 1 -0.2019 4.2388 0.9574 48 1 1.4167 4.8668 1.3944 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451767878.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:38 Heat of formation + Delta-G solvation = -20.435227 kcal Electronic energy + Delta-G solvation = -30241.461282 eV Core-core repulsion = 26424.532661 eV Total energy + Delta-G solvation = -3816.928620 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.94043 -36.68834 -36.15506 -35.94452 -35.19230 -32.59709 -32.35553 -30.60477 -30.26012 -28.36808 -27.12710 -26.37109 -25.89191 -22.91535 -22.44947 -21.50216 -20.67444 -19.84075 -18.39147 -17.68167 -17.44098 -16.95361 -16.68096 -16.31880 -15.93103 -15.55759 -14.53296 -14.34124 -14.04403 -13.70246 -13.55253 -13.46740 -12.91045 -12.86012 -12.78301 -12.51710 -12.44656 -12.29960 -12.10633 -11.97524 -11.96598 -11.67199 -11.48201 -11.41636 -11.36477 -11.28011 -11.11656 -10.96916 -10.75927 -10.63167 -10.53917 -10.47256 -10.37882 -10.25212 -10.16867 -9.55047 -9.37065 -8.59605 -8.53978 -8.11467 -6.07793 -4.06819 1.10095 2.08096 3.26217 3.31403 3.32898 3.45993 4.04759 4.08619 4.27058 4.33460 4.38196 4.69259 4.80989 4.87645 4.95926 5.05418 5.09059 5.16859 5.21518 5.23575 5.34819 5.38385 5.42855 5.54996 5.59954 5.62026 5.64032 5.66899 5.74901 5.78821 5.86429 5.90951 5.93182 5.97495 6.03300 6.08206 6.18150 6.19821 6.32587 6.34864 6.44500 6.50927 6.58130 6.76631 6.79722 7.11883 7.43817 7.59105 8.49822 8.97148 9.51373 11.05874 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014727 B = 0.004450 C = 0.004208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.798780 B = 6291.202274 C = 6651.748477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.117 3.883 3 N -0.985 5.985 4 C 0.230 3.770 5 C -0.530 4.530 6 H 0.077 0.923 7 C 0.074 3.926 8 N -0.895 5.895 9 Si 0.871 3.129 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.265 1.265 13 S 2.795 3.205 14 O -0.958 6.958 15 O -0.990 6.990 16 N -1.024 6.024 17 C 0.123 3.877 18 C -0.093 4.093 19 H 0.092 0.908 20 C -0.071 4.071 21 H 0.101 0.899 22 C -0.165 4.165 23 C -0.161 4.161 24 C -0.066 4.066 25 H 0.101 0.899 26 C -0.118 4.118 27 C -0.070 4.070 28 C -0.130 4.130 29 C 0.126 3.874 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.032 0.968 36 H 0.026 0.974 37 H 0.265 0.735 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.058 0.942 47 H 0.077 0.923 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.438 4.450 14.979 24.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.010 4.010 3 N -0.825 5.825 4 C 0.106 3.894 5 C -0.569 4.569 6 H 0.095 0.905 7 C -0.129 4.129 8 N -0.534 5.534 9 Si 0.698 3.302 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.190 1.190 13 S 2.805 3.195 14 O -0.942 6.942 15 O -0.974 6.974 16 N -0.861 5.861 17 C -0.003 4.003 18 C -0.113 4.113 19 H 0.110 0.890 20 C -0.090 4.090 21 H 0.119 0.881 22 C -0.183 4.183 23 C -0.179 4.179 24 C -0.085 4.085 25 H 0.119 0.881 26 C -0.156 4.156 27 C -0.072 4.072 28 C -0.188 4.188 29 C 0.001 3.999 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.105 0.895 34 H 0.096 0.904 35 H 0.050 0.950 36 H 0.044 0.956 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.143 0.857 41 H 0.144 0.856 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.077 0.923 47 H 0.094 0.906 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -17.310 4.406 15.155 23.425 hybrid contribution -0.788 0.515 -1.030 1.396 sum -18.098 4.922 14.124 23.479 Atomic orbital electron populations 1.22267 0.97280 1.01499 1.01899 1.21166 0.92959 0.82983 1.03883 1.57593 1.81029 1.21439 1.22483 1.19375 0.98133 0.90833 0.81032 1.21378 1.00856 1.28850 1.05854 0.90467 1.24858 0.95053 0.96066 0.96927 1.69898 1.20558 1.44032 1.18869 0.86934 0.81839 0.82251 0.79189 1.19809 1.20961 1.18995 1.01571 0.72446 0.72926 0.72593 1.93622 1.58617 1.57881 1.84074 1.93516 1.82948 1.57622 1.63339 1.60008 1.40832 1.22994 1.62292 1.22210 0.91014 0.96047 0.91001 1.23333 0.94835 0.94436 0.98735 0.88951 1.22926 0.94397 0.96714 0.94929 0.88129 1.23863 1.00306 0.98147 0.95986 1.23913 0.98423 0.96543 0.98983 1.22949 0.93369 0.98019 0.94168 0.88081 1.24052 0.99959 0.94421 0.97127 1.22626 0.94435 0.94807 0.95284 1.21639 0.98428 0.99117 0.99570 1.22260 0.99552 0.82075 0.96028 0.93274 0.92221 0.92083 0.89480 0.90398 0.95008 0.95593 0.92543 0.90406 0.90540 0.85672 0.85585 0.90913 0.90719 0.92121 0.92031 0.92322 0.90555 0.89978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 10.24 37.15 0.38 -1.94 16 2 C 0.12 2.03 6.40 -4.05 -0.03 2.00 16 3 N -0.99 -20.34 2.82 -115.67 -0.33 -20.67 16 4 C 0.23 5.45 4.17 -5.20 -0.02 5.43 16 5 C -0.53 -15.25 9.94 -34.44 -0.34 -15.60 16 6 H 0.08 2.45 8.06 -52.49 -0.42 2.02 16 7 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 8 N -0.90 -27.71 13.96 55.43 0.77 -26.94 16 9 Si 0.87 21.17 27.47 -169.99 -4.67 16.50 16 10 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.27 -5.97 6.54 56.52 0.37 -5.60 16 13 S 2.79 56.92 6.40 -107.50 -0.69 56.23 16 14 O -0.96 -23.31 16.50 -57.17 -0.94 -24.25 16 15 O -0.99 -21.20 16.08 -57.17 -0.92 -22.12 16 16 N -1.02 -15.77 3.77 -110.54 -0.42 -16.19 16 17 C 0.12 1.50 5.85 -2.52 -0.01 1.48 16 18 C -0.09 -0.94 3.59 -86.82 -0.31 -1.25 16 19 H 0.09 0.89 8.00 -51.93 -0.42 0.48 16 20 C -0.07 -0.57 4.99 -86.49 -0.43 -1.01 16 21 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 22 C -0.17 -1.43 7.59 -34.87 -0.26 -1.70 16 23 C -0.16 -1.47 7.59 -34.87 -0.26 -1.73 16 24 C -0.07 -0.58 4.52 -86.50 -0.39 -0.97 16 25 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 26 C -0.12 -0.89 6.64 -22.13 -0.15 -1.03 16 27 C -0.07 -0.74 0.82 -150.74 -0.12 -0.86 16 28 C -0.13 -1.32 8.90 37.16 0.33 -0.99 16 29 C 0.13 1.72 6.04 -2.52 -0.02 1.71 16 30 H 0.05 0.61 6.64 -51.93 -0.34 0.27 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 33 H 0.09 1.57 8.11 -51.93 -0.42 1.15 16 34 H 0.08 1.32 6.91 -51.93 -0.36 0.96 16 35 H 0.03 0.72 7.17 -51.93 -0.37 0.35 16 36 H 0.03 0.62 7.04 -51.93 -0.37 0.26 16 37 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 38 H 0.08 0.97 7.73 -51.93 -0.40 0.57 16 39 H 0.08 0.84 4.75 -51.93 -0.25 0.59 16 40 H 0.13 0.99 8.03 -52.49 -0.42 0.57 16 41 H 0.13 1.11 8.03 -52.49 -0.42 0.69 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.52 7.48 -51.93 -0.39 0.13 16 44 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.06 0.48 7.49 -51.93 -0.39 0.09 16 47 H 0.08 0.97 5.64 -51.92 -0.29 0.68 16 48 H 0.08 1.24 7.50 -51.93 -0.39 0.85 16 LS Contribution 374.36 15.07 5.64 5.64 Total: -1.00 -34.51 374.36 -11.06 -45.58 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -7.78 Total: 0.62 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: -1.74 Total: -14.41 kcal Atomic # 7 Polarization: -63.82 SS G_CDS: 0.03 Total: -63.79 kcal Atomic # 8 Polarization: -44.51 SS G_CDS: -1.86 Total: -46.37 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.67 Total: 16.50 kcal Atomic # 16 Polarization: 56.92 SS G_CDS: -0.69 Total: 56.23 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.51 -11.06 -45.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451767878.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.142 kcal (2) G-P(sol) polarization free energy of solvation -34.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds