Wall clock time and date at job start Sat Apr 11 2020 06:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46502 * 109.47366 * 2 1 4 4 C 1.46493 * 120.00238 * 275.00203 * 3 2 1 5 5 C 1.50702 * 109.47177 * 274.99734 * 4 3 2 6 6 H 1.08000 * 119.99644 * 0.02562 * 5 4 3 7 7 C 1.37870 * 119.99813 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99896 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00506 * 0.02562 * 7 5 4 10 10 H 1.48505 * 109.47081 * 89.99774 * 9 7 5 11 11 H 1.48496 * 109.47387 * 210.00030 * 9 7 5 12 12 H 1.48505 * 109.46858 * 329.99999 * 9 7 5 13 13 S 1.65600 * 119.99857 * 94.99906 * 3 2 1 14 14 O 1.42094 * 106.40328 * 156.46576 * 13 3 2 15 15 O 1.42099 * 106.40328 * 23.53994 * 13 3 2 16 16 N 1.65599 * 107.21947 * 270.00225 * 13 3 2 17 17 C 1.48086 * 127.84985 * 89.97517 * 16 13 3 18 18 C 1.54251 * 104.79993 * 140.05746 * 17 16 13 19 19 H 1.08996 * 113.03316 * 260.36868 * 18 17 16 20 20 C 1.56095 * 108.57835 * 134.04671 * 18 17 16 21 21 H 1.08998 * 116.23584 * 86.01210 * 20 18 17 22 22 C 1.53347 * 104.15484 * 315.84290 * 20 18 17 23 23 C 1.31788 * 108.42729 * 289.74487 * 22 20 18 24 24 C 1.53350 * 108.41090 * 0.02562 * 23 22 20 25 25 H 1.09005 * 116.92535 * 199.99623 * 24 23 22 26 26 C 1.57213 * 100.49148 * 212.78640 * 20 18 17 27 27 C 1.55786 * 104.66346 * 24.01184 * 18 17 16 28 28 C 1.53006 * 113.21291 * 236.50827 * 27 18 17 29 29 C 1.48087 * 127.85367 * 269.97679 * 16 13 3 30 30 H 1.08999 * 109.47298 * 299.99766 * 1 2 3 31 31 H 1.09001 * 109.47470 * 59.99748 * 1 2 3 32 32 H 1.09009 * 109.47052 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47298 * 240.00234 * 2 1 3 34 34 H 1.09001 * 109.47470 * 120.00252 * 2 1 3 35 35 H 1.09004 * 109.47007 * 34.99885 * 4 3 2 36 36 H 1.09003 * 109.47027 * 154.99542 * 4 3 2 37 37 H 0.97004 * 120.00210 * 179.97438 * 8 7 5 38 38 H 1.09003 * 110.37303 * 21.22098 * 17 16 13 39 39 H 1.09006 * 110.37186 * 258.88515 * 17 16 13 40 40 H 1.08001 * 125.78320 * 109.74148 * 22 20 18 41 41 H 1.08000 * 125.79463 * 180.02562 * 23 22 20 42 42 H 1.08999 * 112.52789 * 173.22606 * 26 20 18 43 43 H 1.09002 * 112.52524 * 300.99411 * 26 20 18 44 44 H 1.09001 * 109.46801 * 60.00105 * 28 27 18 45 45 H 1.09001 * 109.46998 * 179.97438 * 28 27 18 46 46 H 1.09000 * 109.47050 * 299.99993 * 28 27 18 47 47 H 1.09007 * 110.37141 * 101.13448 * 29 16 13 48 48 H 1.08990 * 110.36935 * 338.79755 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 -1.2638 5 6 3.4948 1.7889 -1.8823 6 1 4.1720 1.1111 -1.3839 7 6 3.8524 2.3607 -3.0847 8 7 5.0186 2.0812 -3.6247 9 14 2.6808 3.5324 -3.9471 10 1 2.9452 4.9210 -3.4919 11 1 2.8852 3.4454 -5.4153 12 1 1.2804 3.1623 -3.6194 13 16 2.4122 2.1202 1.4287 14 8 3.3283 3.1570 1.1050 15 8 2.7094 1.0799 2.3499 16 7 1.0431 2.8642 1.9895 17 6 0.0021 2.3005 2.8792 18 6 -0.3637 3.4529 3.8370 19 1 0.1245 3.3716 4.8082 20 6 -1.9189 3.5398 3.9393 21 1 -2.3899 2.8937 4.6802 22 6 -2.3985 3.3989 2.4896 23 6 -2.0716 4.4945 1.8343 24 6 -1.3509 5.4409 2.8021 25 1 -1.3143 6.4949 2.5264 26 6 -2.1069 5.0883 4.1351 27 6 0.0227 4.7478 3.0619 28 6 1.0080 5.6358 3.8245 29 6 0.5816 4.2443 1.7153 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0278 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.3617 1.8098 -1.9452 36 1 2.0921 3.1803 -1.0754 37 1 5.2701 2.4832 -4.4709 38 1 0.3992 1.4535 3.4388 39 1 -0.8697 1.9980 2.2991 40 1 -2.9164 2.5462 2.0758 41 1 -2.2764 4.6924 0.7925 42 1 -3.1546 5.3879 4.1130 43 1 -1.5923 5.4628 5.0201 44 1 1.9260 5.0798 4.0148 45 1 1.2359 6.5201 3.2293 46 1 0.5643 5.9400 4.7725 47 1 -0.2019 4.2388 0.9574 48 1 1.4167 4.8668 1.3944 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451767878.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:37 Heat of formation + Delta-G solvation = -44.095728 kcal Electronic energy + Delta-G solvation = -30242.487278 eV Core-core repulsion = 26424.532661 eV Total energy + Delta-G solvation = -3817.954616 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -42.70054 -38.41101 -37.79460 -36.95831 -36.91241 -34.71628 -33.20831 -31.86416 -31.40561 -29.12771 -28.94519 -27.23980 -26.76590 -24.64537 -23.50450 -23.07941 -21.36080 -20.59401 -19.82890 -19.20672 -18.77368 -18.48323 -18.27312 -17.21196 -17.04496 -16.82941 -16.28611 -15.81654 -15.22150 -14.93188 -14.77391 -14.64133 -14.41781 -14.22363 -13.83248 -13.76611 -13.64093 -13.53716 -13.35468 -13.33333 -13.19117 -13.13527 -13.00851 -12.79702 -12.64326 -12.41772 -12.23016 -12.11468 -12.06563 -11.94980 -11.76159 -11.72911 -11.55507 -11.41043 -11.36396 -10.98315 -10.81359 -10.33549 -9.83488 -9.41060 -8.31865 -6.37974 -0.48571 1.32954 1.37483 1.42926 1.45824 1.97708 2.32451 2.53059 3.01495 3.11209 3.43827 3.52652 3.60012 3.89054 4.08440 4.11877 4.13541 4.24641 4.31191 4.35057 4.39314 4.40970 4.50735 4.54909 4.62592 4.65745 4.74289 4.80044 4.82462 4.87498 4.94322 4.98507 4.98760 5.04216 5.11430 5.13051 5.15946 5.24102 5.32234 5.35414 5.37755 5.41528 5.42703 5.45232 5.46664 5.69082 5.80908 6.16128 6.27972 6.64372 7.24977 8.85924 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014727 B = 0.004450 C = 0.004208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.798780 B = 6291.202274 C = 6651.748477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.107 3.893 3 N -0.993 5.993 4 C 0.241 3.759 5 C -0.544 4.544 6 H 0.025 0.975 7 C 0.008 3.992 8 N -0.948 5.948 9 Si 0.943 3.057 10 H -0.269 1.269 11 H -0.277 1.277 12 H -0.229 1.229 13 S 2.805 3.195 14 O -1.008 7.008 15 O -1.008 7.008 16 N -1.019 6.019 17 C 0.116 3.884 18 C -0.092 4.092 19 H 0.097 0.903 20 C -0.063 4.063 21 H 0.120 0.880 22 C -0.166 4.166 23 C -0.174 4.174 24 C -0.064 4.064 25 H 0.109 0.891 26 C -0.110 4.110 27 C -0.069 4.069 28 C -0.131 4.131 29 C 0.118 3.882 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.055 0.945 36 H 0.028 0.972 37 H 0.268 0.732 38 H 0.073 0.927 39 H 0.096 0.904 40 H 0.136 0.864 41 H 0.128 0.872 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.036 0.964 45 H 0.062 0.938 46 H 0.082 0.918 47 H 0.090 0.910 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.905 5.497 15.892 28.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.018 4.018 3 N -0.833 5.833 4 C 0.116 3.884 5 C -0.583 4.583 6 H 0.043 0.957 7 C -0.190 4.190 8 N -0.588 5.588 9 Si 0.765 3.235 10 H -0.194 1.194 11 H -0.202 1.202 12 H -0.151 1.151 13 S 2.816 3.184 14 O -0.992 6.992 15 O -0.992 6.992 16 N -0.860 5.860 17 C -0.008 4.008 18 C -0.113 4.113 19 H 0.115 0.885 20 C -0.082 4.082 21 H 0.138 0.862 22 C -0.184 4.184 23 C -0.192 4.192 24 C -0.082 4.082 25 H 0.128 0.872 26 C -0.147 4.147 27 C -0.071 4.071 28 C -0.189 4.189 29 C -0.007 4.007 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.107 0.893 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.072 0.928 36 H 0.046 0.954 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.113 0.887 40 H 0.153 0.847 41 H 0.146 0.854 42 H 0.102 0.898 43 H 0.101 0.899 44 H 0.056 0.944 45 H 0.081 0.919 46 H 0.101 0.899 47 H 0.108 0.892 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -21.790 5.415 16.092 27.624 hybrid contribution 0.679 0.118 -1.220 1.401 sum -21.111 5.533 14.872 26.409 Atomic orbital electron populations 1.22177 0.93568 1.03554 1.02519 1.21396 0.96021 0.81214 1.03198 1.57552 1.81612 1.22732 1.21424 1.19109 0.95702 0.91250 0.82335 1.21688 1.02520 1.27955 1.06158 0.95675 1.25934 0.97108 0.98121 0.97796 1.70074 1.23167 1.45876 1.19695 0.85793 0.80880 0.79095 0.77773 1.19417 1.20201 1.15120 1.00856 0.72941 0.72149 0.72406 1.93550 1.61511 1.59375 1.84793 1.93477 1.83843 1.58274 1.63649 1.59543 1.40356 1.23812 1.62265 1.22554 0.90345 0.96805 0.91102 1.23368 0.96801 0.92925 0.98172 0.88469 1.22978 0.92323 0.97672 0.95205 0.86190 1.24079 0.99804 0.98246 0.96250 1.24049 0.98876 0.96991 0.99312 1.22976 0.91820 0.98296 0.95153 0.87250 1.24029 1.00480 0.93705 0.96517 1.22640 0.95489 0.95411 0.93526 1.21658 0.97593 0.98804 1.00795 1.22543 0.99065 0.80583 0.98481 0.91941 0.92212 0.89320 0.90975 0.90419 0.92758 0.95373 0.92292 0.90867 0.88658 0.84663 0.85436 0.89796 0.89901 0.94441 0.91930 0.89949 0.89245 0.92285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.91 10.24 71.98 0.74 -3.18 16 2 C 0.11 3.71 6.40 86.38 0.55 4.26 16 3 N -0.99 -41.48 2.82 -519.86 -1.47 -42.95 16 4 C 0.24 11.43 4.17 85.63 0.36 11.79 16 5 C -0.54 -32.53 9.94 25.60 0.25 -32.28 16 6 H 0.02 1.70 8.06 -2.91 -0.02 1.68 16 7 C 0.01 0.49 5.47 84.65 0.46 0.95 16 8 N -0.95 -61.00 13.96 21.45 0.30 -60.70 16 9 Si 0.94 43.35 27.47 68.60 1.88 45.24 16 10 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 12 H -0.23 -9.10 6.54 99.48 0.65 -8.44 16 13 S 2.81 117.15 6.40 -56.49 -0.36 116.79 16 14 O -1.01 -51.45 16.50 -128.00 -2.11 -53.56 16 15 O -1.01 -44.27 16.08 -128.00 -2.06 -46.33 16 16 N -1.02 -30.70 3.77 -503.64 -1.90 -32.60 16 17 C 0.12 2.58 5.85 86.50 0.51 3.09 16 18 C -0.09 -1.62 3.59 -8.33 -0.03 -1.65 16 19 H 0.10 1.63 8.00 -2.39 -0.02 1.61 16 20 C -0.06 -0.76 4.99 -8.12 -0.04 -0.80 16 21 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 22 C -0.17 -2.23 7.59 25.79 0.20 -2.03 16 23 C -0.17 -2.60 7.59 25.79 0.20 -2.40 16 24 C -0.06 -0.91 4.52 -8.13 -0.04 -0.95 16 25 H 0.11 1.39 8.14 -2.38 -0.02 1.37 16 26 C -0.11 -1.20 6.64 33.57 0.22 -0.97 16 27 C -0.07 -1.32 0.82 -49.74 -0.04 -1.36 16 28 C -0.13 -2.49 8.90 71.98 0.64 -1.85 16 29 C 0.12 3.10 6.04 86.50 0.52 3.63 16 30 H 0.06 1.36 6.64 -2.39 -0.02 1.34 16 31 H 0.06 1.48 8.14 -2.39 -0.02 1.47 16 32 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 33 H 0.07 2.67 8.11 -2.39 -0.02 2.65 16 34 H 0.08 2.65 6.91 -2.39 -0.02 2.64 16 35 H 0.05 2.34 7.17 -2.38 -0.02 2.32 16 36 H 0.03 1.33 7.04 -2.39 -0.02 1.32 16 37 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 38 H 0.07 1.70 7.73 -2.39 -0.02 1.68 16 39 H 0.10 1.76 4.75 -2.38 -0.01 1.75 16 40 H 0.14 1.55 8.03 -2.91 -0.02 1.53 16 41 H 0.13 1.85 8.03 -2.91 -0.02 1.83 16 42 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.08 0.80 7.48 -2.39 -0.02 0.78 16 44 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.08 1.15 7.49 -2.39 -0.02 1.13 16 47 H 0.09 2.10 5.64 -2.38 -0.01 2.09 16 48 H 0.06 1.81 7.50 -2.39 -0.02 1.79 16 Total: -1.00 -79.44 374.36 -0.33 -79.77 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 0.89 Total: 18.11 kcal Atomic # 6 Polarization: -28.27 SS G_CDS: 4.50 Total: -23.77 kcal Atomic # 7 Polarization: -133.17 SS G_CDS: -3.07 Total: -136.24 kcal Atomic # 8 Polarization: -95.72 SS G_CDS: -4.17 Total: -99.89 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 1.88 Total: 45.24 kcal Atomic # 16 Polarization: 117.15 SS G_CDS: -0.36 Total: 116.79 kcal Total: -79.44 -0.33 -79.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451767878.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.675 kcal (2) G-P(sol) polarization free energy of solvation -79.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds