Wall clock time and date at job start Sat Apr 11 2020 06:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.47197 * 2 1 4 4 C 1.46496 * 119.99905 * 275.00148 * 3 2 1 5 5 C 1.50700 * 109.47460 * 274.99820 * 4 3 2 6 6 H 1.08009 * 119.99198 * 359.97438 * 5 4 3 7 7 C 1.37872 * 120.00297 * 180.02562 * 5 4 3 8 8 N 1.31510 * 119.99975 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99951 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47065 * 89.99384 * 9 7 5 11 11 H 1.48495 * 109.47397 * 209.99687 * 9 7 5 12 12 H 1.48499 * 109.47167 * 329.99811 * 9 7 5 13 13 S 1.65596 * 119.99972 * 94.99890 * 3 2 1 14 14 O 1.42103 * 106.40218 * 336.45758 * 13 3 2 15 15 O 1.42103 * 106.40133 * 203.54720 * 13 3 2 16 16 N 1.65600 * 107.21857 * 90.00230 * 13 3 2 17 17 C 1.46503 * 119.99757 * 269.99697 * 16 13 3 18 18 C 1.46500 * 119.99638 * 89.99962 * 16 13 3 19 19 C 1.50703 * 109.46887 * 95.00435 * 18 16 13 20 20 C 1.38256 * 120.00325 * 89.99921 * 19 18 16 21 21 C 1.38211 * 120.00062 * 180.27920 * 20 19 18 22 22 C 1.38258 * 119.99784 * 359.47854 * 21 20 19 23 23 C 1.50707 * 119.99997 * 180.23526 * 22 21 20 24 24 C 1.38212 * 120.00085 * 0.52159 * 22 21 20 25 25 C 1.50706 * 120.00275 * 179.72192 * 24 22 21 26 26 C 1.38214 * 119.99514 * 270.01523 * 19 18 16 27 27 H 1.08998 * 109.47018 * 299.99551 * 1 2 3 28 28 H 1.08995 * 109.47397 * 60.00508 * 1 2 3 29 29 H 1.09002 * 109.46993 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47184 * 240.00055 * 2 1 3 31 31 H 1.09005 * 109.47129 * 119.99969 * 2 1 3 32 32 H 1.08999 * 109.47295 * 34.99631 * 4 3 2 33 33 H 1.09001 * 109.46961 * 154.99674 * 4 3 2 34 34 H 0.97003 * 119.99509 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.47047 * 270.00085 * 17 16 13 36 36 H 1.09002 * 109.46915 * 30.00132 * 17 16 13 37 37 H 1.08999 * 109.46775 * 149.99865 * 17 16 13 38 38 H 1.08988 * 109.47441 * 334.99818 * 18 16 13 39 39 H 1.09000 * 109.46440 * 214.99740 * 18 16 13 40 40 H 1.08002 * 119.99676 * 359.97438 * 20 19 18 41 41 H 1.07998 * 120.00348 * 179.72205 * 21 20 19 42 42 H 1.09003 * 109.47135 * 270.28406 * 23 22 21 43 43 H 1.09000 * 109.46785 * 30.28531 * 23 22 21 44 44 H 1.09002 * 109.47199 * 150.28503 * 23 22 21 45 45 H 1.09004 * 109.46442 * 270.02096 * 25 24 22 46 46 H 1.09000 * 109.46849 * 30.01503 * 25 24 22 47 47 H 1.08993 * 109.47102 * 150.01800 * 25 24 22 48 48 H 1.07997 * 120.00449 * 0.02562 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4947 1.7888 -1.8824 6 1 4.1724 1.1117 -1.3835 7 6 3.8529 2.3614 -3.0844 8 7 3.0279 3.1863 -3.6915 9 14 5.5099 1.9655 -3.8506 10 1 5.3748 0.7825 -4.7381 11 1 5.9787 3.1292 -4.6449 12 1 6.4933 1.6698 -2.7779 13 16 2.4122 2.1202 1.4287 14 8 1.6868 1.4415 2.4448 15 8 2.3055 3.5186 1.1998 16 7 4.0144 1.8137 1.7137 17 6 4.4090 0.6238 2.4718 18 6 5.0372 2.7326 1.2078 19 6 5.4043 3.7187 2.2866 20 6 6.4299 3.4296 3.1676 21 6 6.7628 4.3314 4.1606 22 6 6.0773 5.5275 4.2662 23 6 6.4438 6.5133 5.3456 24 6 5.0521 5.8166 3.3855 25 6 4.3008 7.1175 3.5045 26 6 4.7156 4.9120 2.3955 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.3618 1.8097 -1.9453 33 1 2.0921 3.1802 -1.0755 34 1 3.2798 3.5888 -4.5373 35 1 4.4545 0.8678 3.5332 36 1 3.6770 -0.1680 2.3121 37 1 5.3888 0.2863 2.1341 38 1 4.6479 3.2688 0.3425 39 1 5.9220 2.1665 0.9166 40 1 6.9676 2.4968 3.0829 41 1 7.5609 4.1037 4.8516 42 1 5.8598 6.3044 6.2420 43 1 7.5057 6.4232 5.5746 44 1 6.2310 7.5252 5.0010 45 1 3.4475 6.9847 4.1697 46 1 4.9620 7.8831 3.9103 47 1 3.9494 7.4255 2.5198 48 1 3.9140 5.1376 1.7078 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452070728.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:42 Heat of formation + Delta-G solvation = -79.567989 kcal Electronic energy + Delta-G solvation = -29253.951949 eV Core-core repulsion = 25434.459140 eV Total energy + Delta-G solvation = -3819.492809 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -40.61194 -38.35961 -37.68386 -37.41059 -36.85400 -34.68093 -34.14995 -32.99975 -31.54941 -29.72475 -28.48001 -28.00839 -26.96368 -24.97557 -24.76539 -23.26672 -22.88939 -21.15748 -19.81950 -18.71118 -18.56193 -18.18173 -17.51141 -16.79980 -16.65560 -16.49172 -15.90843 -15.82381 -15.37494 -15.01180 -14.90456 -14.78548 -14.53466 -14.13089 -13.98228 -13.82394 -13.63794 -13.60001 -13.54771 -13.42217 -13.36161 -13.23915 -13.02465 -12.81168 -12.72032 -12.70051 -12.68394 -12.48977 -12.33851 -12.22648 -12.12124 -11.88684 -11.71989 -11.66366 -11.58979 -10.56899 -10.07519 -9.77724 -9.61121 -9.34081 -8.15061 -6.28762 -0.34567 0.42605 0.52083 1.44144 1.45302 1.54967 2.00244 2.43501 2.54452 2.87991 3.16979 3.39968 3.76867 3.87440 3.92664 4.02299 4.08343 4.19955 4.31921 4.40053 4.43296 4.45356 4.54520 4.64744 4.68840 4.70417 4.76812 4.83163 4.87821 4.88998 4.94694 4.97303 4.99811 5.06248 5.07724 5.12163 5.25790 5.30682 5.37773 5.40700 5.49867 5.56252 5.62272 5.77223 5.78407 5.81642 6.00018 6.12337 6.19921 6.83461 7.41549 8.93139 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010567 B = 0.004636 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2649.225759 B = 6037.768752 C = 7257.323528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.120 3.880 3 N -0.997 5.997 4 C 0.262 3.738 5 C -0.537 4.537 6 H 0.073 0.927 7 C 0.013 3.987 8 N -0.929 5.929 9 Si 0.956 3.044 10 H -0.274 1.274 11 H -0.290 1.290 12 H -0.256 1.256 13 S 2.790 3.210 14 O -1.007 7.007 15 O -1.007 7.007 16 N -0.998 5.998 17 C 0.090 3.910 18 C 0.170 3.830 19 C -0.123 4.123 20 C -0.106 4.106 21 C -0.125 4.125 22 C -0.094 4.094 23 C -0.113 4.113 24 C -0.109 4.109 25 C -0.117 4.117 26 C -0.127 4.127 27 H 0.044 0.956 28 H 0.047 0.953 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.018 0.982 33 H 0.015 0.985 34 H 0.264 0.736 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.097 0.903 38 H 0.067 0.933 39 H 0.105 0.895 40 H 0.145 0.855 41 H 0.151 0.849 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.071 0.929 46 H 0.093 0.907 47 H 0.055 0.945 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.003 -1.629 15.752 17.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.006 4.006 3 N -0.838 5.838 4 C 0.139 3.861 5 C -0.576 4.576 6 H 0.092 0.908 7 C -0.187 4.187 8 N -0.569 5.569 9 Si 0.781 3.219 10 H -0.200 1.200 11 H -0.216 1.216 12 H -0.180 1.180 13 S 2.799 3.201 14 O -0.991 6.991 15 O -0.991 6.991 16 N -0.838 5.838 17 C -0.055 4.055 18 C 0.045 3.955 19 C -0.125 4.125 20 C -0.125 4.125 21 C -0.142 4.142 22 C -0.094 4.094 23 C -0.169 4.169 24 C -0.109 4.109 25 C -0.173 4.173 26 C -0.146 4.146 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.112 0.888 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.036 0.964 33 H 0.033 0.967 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.116 0.884 38 H 0.086 0.914 39 H 0.123 0.877 40 H 0.162 0.838 41 H 0.169 0.831 42 H 0.096 0.904 43 H 0.100 0.900 44 H 0.095 0.905 45 H 0.090 0.910 46 H 0.111 0.889 47 H 0.074 0.926 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 7.382 -1.056 16.147 17.786 hybrid contribution 0.355 -0.114 -1.451 1.498 sum 7.737 -1.170 14.696 16.649 Atomic orbital electron populations 1.22201 0.95988 1.03338 1.01205 1.21279 0.94649 0.81406 1.03224 1.57737 1.79200 1.24026 1.22839 1.18705 0.96622 0.90682 0.80122 1.21809 1.02429 1.27485 1.05911 0.90838 1.25788 1.00687 0.94644 0.97548 1.70074 1.38099 1.31206 1.17533 0.85581 0.79977 0.77530 0.78812 1.19983 1.21581 1.18013 1.01500 0.73345 0.72665 0.72549 1.93503 1.71440 1.76454 1.57658 1.93502 1.86485 1.32867 1.86247 1.57701 1.23795 1.34266 1.68002 1.21668 1.03055 0.85042 0.95699 1.20137 0.92476 0.89616 0.93301 1.20370 0.97708 0.95411 0.99027 1.21245 0.96486 1.00347 0.94406 1.21335 1.00696 0.93418 0.98783 1.20173 0.95229 0.96789 0.97223 1.20894 1.02696 0.97433 0.95844 1.20065 0.97698 0.97335 0.95771 1.20895 1.00046 0.93871 1.02477 1.21345 0.99502 0.94783 0.98991 0.93687 0.93397 0.88824 0.89942 0.89758 0.96418 0.96652 0.92688 0.92210 0.91093 0.88415 0.91422 0.87668 0.83769 0.83134 0.90397 0.90012 0.90544 0.90993 0.88882 0.92576 0.87508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.31 10.24 71.98 0.74 -4.58 16 2 C 0.12 4.11 6.06 86.38 0.52 4.63 16 3 N -1.00 -42.00 2.82 -519.84 -1.47 -43.46 16 4 C 0.26 13.36 5.43 85.63 0.47 13.82 16 5 C -0.54 -27.67 9.38 25.60 0.24 -27.43 16 6 H 0.07 3.55 7.81 -2.91 -0.02 3.53 16 7 C 0.01 0.68 5.46 84.65 0.46 1.14 16 8 N -0.93 -53.83 13.29 21.44 0.28 -53.55 16 9 Si 0.96 41.49 29.54 68.60 2.03 43.52 16 10 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 11 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 12 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 13 S 2.79 115.88 5.97 -56.49 -0.34 115.55 16 14 O -1.01 -42.25 16.18 -128.00 -2.07 -44.32 16 15 O -1.01 -48.75 13.79 -128.00 -1.76 -50.51 16 16 N -1.00 -33.93 3.23 -543.23 -1.75 -35.68 16 17 C 0.09 2.25 10.33 127.77 1.32 3.57 16 18 C 0.17 5.83 5.49 85.63 0.47 6.30 16 19 C -0.12 -4.01 5.46 -19.86 -0.11 -4.11 16 20 C -0.11 -2.68 9.70 22.27 0.22 -2.46 16 21 C -0.12 -2.77 9.70 22.27 0.22 -2.55 16 22 C -0.09 -2.24 5.88 -19.86 -0.12 -2.35 16 23 C -0.11 -1.78 9.60 71.24 0.68 -1.09 16 24 C -0.11 -3.20 5.88 -19.86 -0.12 -3.32 16 25 C -0.12 -2.86 9.60 71.24 0.68 -2.18 16 26 C -0.13 -4.57 8.94 22.27 0.20 -4.37 16 27 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.08 2.78 8.11 -2.38 -0.02 2.76 16 31 H 0.08 2.48 7.26 -2.38 -0.02 2.46 16 32 H 0.02 0.96 8.11 -2.39 -0.02 0.94 16 33 H 0.02 0.89 6.91 -2.39 -0.02 0.87 16 34 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 35 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.07 1.69 7.44 -2.39 -0.02 1.67 16 37 H 0.10 1.86 7.94 -2.39 -0.02 1.84 16 38 H 0.07 2.83 7.55 -2.39 -0.02 2.81 16 39 H 0.11 3.01 7.91 -2.39 -0.02 2.99 16 40 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 41 H 0.15 2.31 8.06 -2.91 -0.02 2.28 16 42 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.08 1.00 8.09 -2.39 -0.02 0.98 16 44 H 0.08 1.10 5.95 -2.39 -0.01 1.08 16 45 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 46 H 0.09 1.72 5.95 -2.39 -0.01 1.71 16 47 H 0.06 1.48 8.08 -2.39 -0.02 1.46 16 48 H 0.11 4.50 6.60 -2.91 -0.02 4.48 16 Total: -1.00 -69.84 400.29 1.72 -68.12 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: 0.93 Total: 25.33 kcal Atomic # 6 Polarization: -30.86 SS G_CDS: 5.88 Total: -24.98 kcal Atomic # 7 Polarization: -129.76 SS G_CDS: -2.94 Total: -132.70 kcal Atomic # 8 Polarization: -91.00 SS G_CDS: -3.84 Total: -94.83 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Atomic # 16 Polarization: 115.88 SS G_CDS: -0.34 Total: 115.55 kcal Total: -69.84 1.72 -68.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452070728.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.449 kcal (2) G-P(sol) polarization free energy of solvation -69.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds