Wall clock time and date at job start Sat Apr 11 2020 06:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47187 * 2 1 4 4 C 1.50695 * 109.46920 * 240.00539 * 2 1 3 5 5 O 1.21283 * 119.99875 * 261.07981 * 4 2 1 6 6 N 1.34773 * 120.00538 * 81.35885 * 4 2 1 7 7 C 1.46506 * 120.00289 * 184.87098 * 6 4 2 8 8 C 1.52998 * 109.46888 * 175.31244 * 7 6 4 9 9 C 1.50695 * 115.55279 * 61.49055 * 8 7 6 10 10 H 1.08001 * 119.99933 * 266.18187 * 9 8 7 11 11 C 1.37874 * 120.00213 * 86.18528 * 9 8 7 12 12 N 1.31517 * 119.99896 * 2.41166 * 11 9 8 13 13 Si 1.86805 * 120.00075 * 182.42059 * 11 9 8 14 14 H 1.48495 * 109.47233 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.46975 * 119.99623 * 13 11 9 16 16 H 1.48495 * 109.46755 * 239.99321 * 13 11 9 17 17 C 1.53004 * 117.49840 * 275.81402 * 8 7 6 18 18 C 1.53009 * 117.49585 * 207.16013 * 8 7 6 19 19 N 1.46494 * 109.47403 * 120.00251 * 2 1 3 20 20 C 1.36533 * 118.86458 * 59.72915 * 19 2 1 21 21 C 1.34297 * 122.41519 * 179.69739 * 20 19 2 22 22 C 1.46365 * 119.41571 * 0.56971 * 21 20 19 23 23 C 1.39570 * 122.04983 * 179.70614 * 22 21 20 24 24 C 1.36726 * 119.49514 * 180.02562 * 23 22 21 25 25 C 1.38895 * 120.88968 * 359.97438 * 24 23 22 26 26 C 1.36749 * 120.88601 * 0.02562 * 25 24 23 27 27 C 1.39465 * 119.50368 * 359.97438 * 26 25 24 28 28 C 1.34787 * 118.86519 * 240.00341 * 19 2 1 29 29 O 1.21786 * 120.38347 * 0.02562 * 28 19 2 30 30 H 1.08998 * 109.46721 * 183.07441 * 1 2 3 31 31 H 1.09007 * 109.46816 * 303.07494 * 1 2 3 32 32 H 1.08999 * 109.47475 * 63.07075 * 1 2 3 33 33 H 0.96997 * 119.99544 * 4.86057 * 6 4 2 34 34 H 1.09002 * 109.46475 * 295.30693 * 7 6 4 35 35 H 1.08998 * 109.47317 * 55.31088 * 7 6 4 36 36 H 0.97002 * 119.99570 * 185.01013 * 12 11 9 37 37 H 1.09001 * 117.49793 * 0.02562 * 17 8 7 38 38 H 1.09003 * 117.49472 * 145.02445 * 17 8 7 39 39 H 1.09001 * 117.49288 * 214.98110 * 18 8 7 40 40 H 1.09000 * 117.49564 * 359.97438 * 18 8 7 41 41 H 1.08007 * 118.79169 * 0.02562 * 20 19 2 42 42 H 1.08004 * 120.29033 * 180.31389 * 21 20 19 43 43 H 1.08004 * 120.25232 * 359.97438 * 23 22 21 44 44 H 1.08000 * 119.55346 * 179.97438 * 24 23 22 45 45 H 1.08001 * 119.55253 * 179.97438 * 25 24 23 46 46 H 1.08001 * 120.24661 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.3880 -1.8676 -1.1599 6 7 2.0916 -0.0578 -2.4083 7 6 2.4778 -0.7764 -3.6252 8 6 2.3534 0.1579 -4.8303 9 6 3.2327 1.3813 -4.7979 10 1 2.8497 2.3113 -4.4043 11 6 4.5261 1.3134 -5.2706 12 7 4.9773 0.1941 -5.7934 13 14 5.6378 2.8112 -5.1683 14 1 4.8967 3.9360 -4.5432 15 1 6.8312 2.4866 -4.3463 16 1 6.0691 3.2016 -6.5346 17 6 0.9739 0.2964 -5.4774 18 6 2.0811 -0.4804 -6.1940 19 7 2.0184 -0.6906 1.1961 20 6 1.6699 -1.9961 1.3918 21 6 2.0821 -2.6990 2.4594 22 6 2.9264 -2.0511 3.4642 23 6 3.3808 -2.7275 4.5973 24 6 4.1669 -2.0711 5.5032 25 6 4.5192 -0.7415 5.3102 26 6 4.0886 -0.0539 4.2094 27 6 3.2854 -0.6975 3.2683 28 6 2.7917 -0.0137 2.0681 29 8 3.0771 1.1522 1.8621 30 1 -0.3633 -1.0262 0.0551 31 1 -0.3633 0.5609 0.8612 32 1 -0.3634 0.4654 -0.9162 33 1 1.8784 0.8875 -2.4502 34 1 3.5094 -1.1166 -3.5342 35 1 1.8224 -1.6363 -3.7629 36 1 5.9075 0.1234 -6.0592 37 1 0.1549 -0.2778 -5.0442 38 1 0.7025 1.2724 -5.8799 39 1 2.5378 -0.0152 -7.0676 40 1 1.9911 -1.5660 -6.2325 41 1 1.0439 -2.4830 0.6586 42 1 1.7897 -3.7319 2.5775 43 1 3.1127 -3.7614 4.7579 44 1 4.5187 -2.5935 6.3805 45 1 5.1408 -0.2438 6.0398 46 1 4.3691 0.9796 4.0694 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000515244067.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:52 Heat of formation + Delta-G solvation = -3.980134 kcal Electronic energy + Delta-G solvation = -29139.958893 eV Core-core repulsion = 25188.299868 eV Total energy + Delta-G solvation = -3951.659025 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.50438 -39.49483 -38.34569 -37.06679 -36.51275 -33.91430 -33.38592 -32.01217 -31.59523 -30.56291 -29.29345 -26.72463 -25.48387 -24.84582 -23.94521 -22.97649 -21.79261 -21.22941 -20.09483 -19.48684 -18.36663 -17.95286 -17.46352 -16.73018 -16.14087 -15.51159 -15.48817 -15.22901 -14.98600 -14.82892 -14.67359 -14.52070 -14.04212 -13.94770 -13.29912 -13.17733 -13.06238 -12.90837 -12.84262 -12.67515 -12.40763 -12.00680 -11.87782 -11.69433 -11.62298 -11.46760 -11.16994 -11.02614 -10.98507 -10.54734 -10.30701 -10.10940 -9.88147 -9.63736 -9.35350 -9.20607 -9.11937 -8.57246 -8.40254 -8.18802 -7.73473 -6.13357 -4.23180 0.64843 0.85624 2.14269 2.39760 2.79956 2.91444 3.24005 3.33464 3.35358 3.60505 3.92695 4.31364 4.33078 4.54294 4.64217 4.73298 4.79802 4.84747 4.93082 5.02989 5.11924 5.15908 5.20210 5.29172 5.37540 5.51965 5.53153 5.71542 5.76878 5.81171 5.87713 5.93533 6.15039 6.24631 6.27538 6.30863 6.36920 6.43956 6.48611 6.62718 6.72235 6.75259 7.05116 7.08104 7.13247 7.30776 7.46024 7.75917 7.82782 8.05508 8.26499 8.57921 8.79066 9.45450 10.94459 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014314 B = 0.002940 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.636688 B = 9522.934782 C =10497.821857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.095 3.905 3 H 0.134 0.866 4 C 0.497 3.503 5 O -0.547 6.547 6 N -0.691 5.691 7 C 0.164 3.836 8 C 0.023 3.977 9 C -0.502 4.502 10 H 0.061 0.939 11 C 0.074 3.926 12 N -0.874 5.874 13 Si 0.889 3.111 14 H -0.271 1.271 15 H -0.283 1.283 16 H -0.284 1.284 17 C -0.211 4.211 18 C -0.141 4.141 19 N -0.502 5.502 20 C 0.156 3.844 21 C -0.227 4.227 22 C 0.018 3.982 23 C -0.132 4.132 24 C -0.083 4.083 25 C -0.148 4.148 26 C -0.045 4.045 27 C -0.158 4.158 28 C 0.546 3.454 29 O -0.526 6.526 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.405 0.595 34 H 0.069 0.931 35 H 0.042 0.958 36 H 0.261 0.739 37 H 0.064 0.936 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.063 0.937 41 H 0.160 0.840 42 H 0.146 0.854 43 H 0.131 0.869 44 H 0.125 0.875 45 H 0.126 0.874 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.086 -4.775 18.885 21.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.011 4.011 3 H 0.151 0.849 4 C 0.280 3.720 5 O -0.426 6.426 6 N -0.339 5.339 7 C 0.041 3.959 8 C 0.022 3.978 9 C -0.539 4.539 10 H 0.079 0.921 11 C -0.130 4.130 12 N -0.510 5.510 13 Si 0.716 3.284 14 H -0.196 1.196 15 H -0.209 1.209 16 H -0.210 1.210 17 C -0.248 4.248 18 C -0.179 4.179 19 N -0.216 5.216 20 C 0.036 3.964 21 C -0.251 4.251 22 C 0.016 3.984 23 C -0.150 4.150 24 C -0.102 4.102 25 C -0.167 4.167 26 C -0.064 4.064 27 C -0.161 4.161 28 C 0.342 3.658 29 O -0.404 6.404 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.239 0.761 34 H 0.087 0.913 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.106 0.894 40 H 0.082 0.918 41 H 0.177 0.823 42 H 0.164 0.836 43 H 0.149 0.851 44 H 0.143 0.857 45 H 0.144 0.856 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.519 -4.918 18.573 20.632 hybrid contribution 0.780 1.024 -0.163 1.298 sum -6.739 -3.894 18.410 19.987 Atomic orbital electron populations 1.22088 0.91109 1.03719 1.04272 1.21448 0.96787 0.99627 0.83253 0.84850 1.20401 0.79330 0.87482 0.84790 1.90682 1.49355 1.17392 1.85133 1.45941 1.66647 1.13965 1.07345 1.21046 0.99484 0.92851 0.82538 1.19032 0.92694 0.96515 0.89548 1.20389 0.96843 0.94482 1.42224 0.92082 1.24982 0.98176 0.96021 0.93806 1.70000 1.15158 1.25731 1.40074 0.86591 0.80873 0.83175 0.77754 1.19591 1.20903 1.20959 1.23042 0.92580 1.00963 1.08198 1.22466 1.00961 0.96248 0.98233 1.44827 1.44832 1.11312 1.20670 1.21428 0.95788 0.82849 0.96378 1.21340 1.06827 1.00776 0.96114 1.19162 0.93556 0.91786 0.93882 1.20849 0.99844 1.00217 0.94083 1.21035 0.95935 0.94592 0.98593 1.20853 1.02313 0.94984 0.98502 1.20815 0.93434 1.00164 0.91971 1.19789 1.04910 0.94636 0.96810 1.18215 0.78055 0.86343 0.83185 1.90862 1.57571 1.15804 1.76200 0.91246 0.90772 0.89560 0.76057 0.91276 0.94002 0.92876 0.91723 0.90317 0.89448 0.91797 0.82295 0.83592 0.85127 0.85700 0.85556 0.84733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.17 37.16 0.34 -1.22 16 2 C 0.10 1.34 2.98 -69.09 -0.21 1.13 16 3 H 0.13 1.95 6.81 -51.93 -0.35 1.59 16 4 C 0.50 8.66 7.01 -10.99 -0.08 8.58 16 5 O -0.55 -11.00 14.51 5.55 0.08 -10.92 16 6 N -0.69 -12.68 5.45 -60.29 -0.33 -13.01 16 7 C 0.16 3.53 5.52 -4.04 -0.02 3.51 16 8 C 0.02 0.52 1.52 -155.66 -0.24 0.28 16 9 C -0.50 -12.69 8.43 -34.44 -0.29 -12.98 16 10 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 11 C 0.07 1.96 5.42 -17.82 -0.10 1.87 16 12 N -0.87 -24.05 12.64 55.43 0.70 -23.35 16 13 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 14 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 15 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 C -0.21 -4.19 9.95 -26.69 -0.27 -4.46 16 18 C -0.14 -3.14 9.14 -26.69 -0.24 -3.38 16 19 N -0.50 -7.34 2.50 -111.87 -0.28 -7.62 16 20 C 0.16 1.99 7.96 -16.85 -0.13 1.86 16 21 C -0.23 -2.59 10.03 -37.70 -0.38 -2.97 16 22 C 0.02 0.22 5.89 -104.93 -0.62 -0.40 16 23 C -0.13 -1.28 9.83 -39.63 -0.39 -1.67 16 24 C -0.08 -0.73 9.96 -39.88 -0.40 -1.13 16 25 C -0.15 -1.45 9.96 -39.88 -0.40 -1.84 16 26 C -0.05 -0.56 9.62 -39.66 -0.38 -0.94 16 27 C -0.16 -2.24 5.90 -104.83 -0.62 -2.86 16 28 C 0.55 8.84 7.62 -12.85 -0.10 8.74 16 29 O -0.53 -9.71 15.80 5.11 0.08 -9.63 16 30 H 0.07 0.65 7.02 -51.93 -0.36 0.28 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.40 6.88 8.21 -40.82 -0.34 6.55 16 34 H 0.07 1.74 8.14 -51.93 -0.42 1.32 16 35 H 0.04 0.87 8.11 -51.93 -0.42 0.45 16 36 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 37 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 39 H 0.09 2.11 8.14 -51.93 -0.42 1.69 16 40 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 41 H 0.16 1.85 6.52 -52.48 -0.34 1.50 16 42 H 0.15 1.24 8.06 -52.48 -0.42 0.82 16 43 H 0.13 0.94 8.06 -52.48 -0.42 0.51 16 44 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 45 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 46 H 0.13 1.62 7.80 -52.49 -0.41 1.21 16 LS Contribution 387.50 15.07 5.84 5.84 Total: -1.00 -31.49 387.50 -9.86 -41.35 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -6.42 Total: 9.53 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -4.51 Total: -7.88 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: 0.09 Total: -43.97 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: 0.16 Total: -20.55 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.49 -9.86 -41.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515244067.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.372 kcal (2) G-P(sol) polarization free energy of solvation -31.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds