Wall clock time and date at job start Sat Apr 11 2020 06:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47187 * 2 1 4 4 C 1.50695 * 109.46920 * 240.00539 * 2 1 3 5 5 O 1.21283 * 119.99875 * 261.07981 * 4 2 1 6 6 N 1.34773 * 120.00538 * 81.35885 * 4 2 1 7 7 C 1.46506 * 120.00289 * 184.87098 * 6 4 2 8 8 C 1.52998 * 109.46888 * 175.31244 * 7 6 4 9 9 C 1.50695 * 115.55279 * 61.49055 * 8 7 6 10 10 H 1.08001 * 119.99933 * 266.18187 * 9 8 7 11 11 C 1.37874 * 120.00213 * 86.18528 * 9 8 7 12 12 N 1.31517 * 119.99896 * 2.41166 * 11 9 8 13 13 Si 1.86805 * 120.00075 * 182.42059 * 11 9 8 14 14 H 1.48495 * 109.47233 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.46975 * 119.99623 * 13 11 9 16 16 H 1.48495 * 109.46755 * 239.99321 * 13 11 9 17 17 C 1.53004 * 117.49840 * 275.81402 * 8 7 6 18 18 C 1.53009 * 117.49585 * 207.16013 * 8 7 6 19 19 N 1.46494 * 109.47403 * 120.00251 * 2 1 3 20 20 C 1.36533 * 118.86458 * 59.72915 * 19 2 1 21 21 C 1.34297 * 122.41519 * 179.69739 * 20 19 2 22 22 C 1.46365 * 119.41571 * 0.56971 * 21 20 19 23 23 C 1.39570 * 122.04983 * 179.70614 * 22 21 20 24 24 C 1.36726 * 119.49514 * 180.02562 * 23 22 21 25 25 C 1.38895 * 120.88968 * 359.97438 * 24 23 22 26 26 C 1.36749 * 120.88601 * 0.02562 * 25 24 23 27 27 C 1.39465 * 119.50368 * 359.97438 * 26 25 24 28 28 C 1.34787 * 118.86519 * 240.00341 * 19 2 1 29 29 O 1.21786 * 120.38347 * 0.02562 * 28 19 2 30 30 H 1.08998 * 109.46721 * 183.07441 * 1 2 3 31 31 H 1.09007 * 109.46816 * 303.07494 * 1 2 3 32 32 H 1.08999 * 109.47475 * 63.07075 * 1 2 3 33 33 H 0.96997 * 119.99544 * 4.86057 * 6 4 2 34 34 H 1.09002 * 109.46475 * 295.30693 * 7 6 4 35 35 H 1.08998 * 109.47317 * 55.31088 * 7 6 4 36 36 H 0.97002 * 119.99570 * 185.01013 * 12 11 9 37 37 H 1.09001 * 117.49793 * 0.02562 * 17 8 7 38 38 H 1.09003 * 117.49472 * 145.02445 * 17 8 7 39 39 H 1.09001 * 117.49288 * 214.98110 * 18 8 7 40 40 H 1.09000 * 117.49564 * 359.97438 * 18 8 7 41 41 H 1.08007 * 118.79169 * 0.02562 * 20 19 2 42 42 H 1.08004 * 120.29033 * 180.31389 * 21 20 19 43 43 H 1.08004 * 120.25232 * 359.97438 * 23 22 21 44 44 H 1.08000 * 119.55346 * 179.97438 * 24 23 22 45 45 H 1.08001 * 119.55253 * 179.97438 * 25 24 23 46 46 H 1.08001 * 120.24661 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.3880 -1.8676 -1.1599 6 7 2.0916 -0.0578 -2.4083 7 6 2.4778 -0.7764 -3.6252 8 6 2.3534 0.1579 -4.8303 9 6 3.2327 1.3813 -4.7979 10 1 2.8497 2.3113 -4.4043 11 6 4.5261 1.3134 -5.2706 12 7 4.9773 0.1941 -5.7934 13 14 5.6378 2.8112 -5.1683 14 1 4.8967 3.9360 -4.5432 15 1 6.8312 2.4866 -4.3463 16 1 6.0691 3.2016 -6.5346 17 6 0.9739 0.2964 -5.4774 18 6 2.0811 -0.4804 -6.1940 19 7 2.0184 -0.6906 1.1961 20 6 1.6699 -1.9961 1.3918 21 6 2.0821 -2.6990 2.4594 22 6 2.9264 -2.0511 3.4642 23 6 3.3808 -2.7275 4.5973 24 6 4.1669 -2.0711 5.5032 25 6 4.5192 -0.7415 5.3102 26 6 4.0886 -0.0539 4.2094 27 6 3.2854 -0.6975 3.2683 28 6 2.7917 -0.0137 2.0681 29 8 3.0771 1.1522 1.8621 30 1 -0.3633 -1.0262 0.0551 31 1 -0.3633 0.5609 0.8612 32 1 -0.3634 0.4654 -0.9162 33 1 1.8784 0.8875 -2.4502 34 1 3.5094 -1.1166 -3.5342 35 1 1.8224 -1.6363 -3.7629 36 1 5.9075 0.1234 -6.0592 37 1 0.1549 -0.2778 -5.0442 38 1 0.7025 1.2724 -5.8799 39 1 2.5378 -0.0152 -7.0676 40 1 1.9911 -1.5660 -6.2325 41 1 1.0439 -2.4830 0.6586 42 1 1.7897 -3.7319 2.5775 43 1 3.1127 -3.7614 4.7579 44 1 4.5187 -2.5935 6.3805 45 1 5.1408 -0.2438 6.0398 46 1 4.3691 0.9796 4.0694 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000515244067.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:51 Heat of formation + Delta-G solvation = -21.808711 kcal Electronic energy + Delta-G solvation = -29140.731998 eV Core-core repulsion = 25188.299868 eV Total energy + Delta-G solvation = -3952.432130 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.58711 -40.76974 -39.39893 -38.59462 -37.83091 -35.22466 -34.63031 -33.98350 -32.48992 -31.49941 -30.22434 -28.33975 -27.31165 -25.92727 -24.87197 -24.09162 -22.92477 -22.70023 -21.53058 -21.16673 -19.48320 -18.92109 -18.67838 -18.01360 -17.81949 -16.80173 -16.73513 -16.50431 -16.24297 -16.19346 -16.04522 -15.62709 -15.50713 -14.88588 -14.81468 -14.46365 -14.17885 -14.03732 -13.77945 -13.74390 -13.56178 -13.49486 -13.30868 -12.95646 -12.90748 -12.82188 -12.62029 -12.49493 -12.38154 -12.02458 -11.99487 -11.43988 -11.25312 -11.05487 -10.99625 -10.50796 -10.44988 -10.11074 -10.05622 -9.89682 -8.69939 -8.15168 -6.27760 -0.26672 -0.01479 1.17723 1.25583 1.35943 1.40892 1.48761 1.57190 1.85871 2.27521 2.38860 3.00377 3.14396 3.29984 3.45564 3.64207 3.70106 3.80012 3.81552 3.91445 4.03154 4.08534 4.22521 4.35981 4.41488 4.52738 4.55269 4.62469 4.65599 4.69123 4.73238 4.88159 4.91425 4.97332 5.02442 5.02735 5.06817 5.27998 5.28678 5.46437 5.48227 5.49946 5.56100 5.59675 5.68623 5.73988 5.94758 6.08628 6.32741 6.56225 6.72398 6.81006 7.14026 7.42626 8.92337 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014314 B = 0.002940 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.636688 B = 9522.934782 C =10497.821857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.101 3.899 3 H 0.124 0.876 4 C 0.499 3.501 5 O -0.574 6.574 6 N -0.690 5.690 7 C 0.181 3.819 8 C -0.001 4.001 9 C -0.504 4.504 10 H 0.063 0.937 11 C 0.026 3.974 12 N -0.905 5.905 13 Si 0.941 3.059 14 H -0.262 1.262 15 H -0.291 1.291 16 H -0.282 1.282 17 C -0.174 4.174 18 C -0.153 4.153 19 N -0.503 5.503 20 C 0.125 3.875 21 C -0.209 4.209 22 C -0.002 4.002 23 C -0.126 4.126 24 C -0.077 4.077 25 C -0.140 4.140 26 C -0.070 4.070 27 C -0.187 4.187 28 C 0.531 3.469 29 O -0.569 6.569 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.411 0.589 34 H 0.023 0.977 35 H 0.051 0.949 36 H 0.258 0.742 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.169 0.831 42 H 0.180 0.820 43 H 0.164 0.836 44 H 0.165 0.835 45 H 0.154 0.846 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.451 -5.880 21.389 24.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.005 4.005 3 H 0.141 0.859 4 C 0.284 3.716 5 O -0.454 6.454 6 N -0.339 5.339 7 C 0.057 3.943 8 C -0.001 4.001 9 C -0.541 4.541 10 H 0.081 0.919 11 C -0.175 4.175 12 N -0.543 5.543 13 Si 0.768 3.232 14 H -0.186 1.186 15 H -0.218 1.218 16 H -0.208 1.208 17 C -0.211 4.211 18 C -0.191 4.191 19 N -0.218 5.218 20 C 0.006 3.994 21 C -0.231 4.231 22 C -0.004 4.004 23 C -0.144 4.144 24 C -0.095 4.095 25 C -0.157 4.157 26 C -0.089 4.089 27 C -0.190 4.190 28 C 0.328 3.672 29 O -0.452 6.452 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.117 0.883 33 H 0.248 0.752 34 H 0.041 0.959 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.113 0.887 38 H 0.102 0.898 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.186 0.814 42 H 0.197 0.803 43 H 0.181 0.819 44 H 0.182 0.818 45 H 0.171 0.829 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.921 -6.029 21.088 23.678 hybrid contribution 1.246 1.278 -0.805 1.958 sum -7.674 -4.751 20.284 22.201 Atomic orbital electron populations 1.22099 0.87741 1.04898 1.05546 1.21442 0.99216 0.98301 0.81558 0.85867 1.20973 0.78235 0.87169 0.85258 1.90658 1.50347 1.18787 1.85655 1.45832 1.66880 1.14205 1.06946 1.20601 0.97018 0.93151 0.83492 1.19047 0.94792 0.96205 0.90084 1.20731 0.97144 0.95470 1.40803 0.91915 1.25643 0.99696 0.97996 0.94129 1.70109 1.15114 1.27366 1.41687 0.85759 0.79060 0.80894 0.77486 1.18622 1.21802 1.20784 1.23031 0.91773 1.00958 1.05292 1.22384 1.02772 0.96839 0.97143 1.44876 1.44596 1.12080 1.20253 1.21708 0.97539 0.82389 0.97773 1.21815 1.04679 1.01812 0.94786 1.19460 0.94377 0.91245 0.95339 1.21284 0.98809 1.01556 0.92769 1.21521 0.94525 0.94047 0.99360 1.21236 1.01323 0.95593 0.97593 1.20925 0.94557 1.00229 0.93208 1.19953 1.06448 0.95933 0.96715 1.18713 0.78076 0.86229 0.84152 1.90811 1.59510 1.17440 1.77406 0.90104 0.89460 0.88252 0.75242 0.95879 0.93111 0.93309 0.88735 0.89819 0.91963 0.90988 0.81405 0.80306 0.81874 0.81789 0.82851 0.85859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.17 71.98 0.66 -2.10 16 2 C 0.10 2.88 2.98 44.25 0.13 3.01 16 3 H 0.12 3.76 6.81 -2.39 -0.02 3.74 16 4 C 0.50 17.57 7.01 87.66 0.61 18.19 16 5 O -0.57 -23.43 14.51 -3.04 -0.04 -23.47 16 6 N -0.69 -25.50 5.45 -463.06 -2.52 -28.02 16 7 C 0.18 7.93 5.52 86.38 0.48 8.41 16 8 C 0.00 -0.03 1.52 -52.93 -0.08 -0.11 16 9 C -0.50 -25.66 8.43 25.60 0.22 -25.44 16 10 H 0.06 3.10 7.81 -2.91 -0.02 3.08 16 11 C 0.03 1.40 5.42 84.65 0.46 1.86 16 12 N -0.91 -51.38 12.64 21.45 0.27 -51.11 16 13 Si 0.94 43.31 29.54 68.60 2.03 45.33 16 14 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 15 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 16 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 17 C -0.17 -6.58 9.95 30.62 0.30 -6.28 16 18 C -0.15 -6.82 9.14 30.62 0.28 -6.54 16 19 N -0.50 -14.99 2.50 -626.03 -1.56 -16.55 16 20 C 0.12 3.11 7.96 83.06 0.66 3.77 16 21 C -0.21 -4.37 10.03 23.49 0.24 -4.13 16 22 C 0.00 -0.06 5.89 -20.06 -0.12 -0.17 16 23 C -0.13 -2.00 9.83 22.24 0.22 -1.79 16 24 C -0.08 -1.05 9.96 22.07 0.22 -0.83 16 25 C -0.14 -2.40 9.96 22.08 0.22 -2.18 16 26 C -0.07 -1.75 9.62 22.22 0.21 -1.54 16 27 C -0.19 -5.38 5.90 -20.00 -0.12 -5.50 16 28 C 0.53 17.98 7.62 86.45 0.66 18.63 16 29 O -0.57 -22.47 15.80 -4.62 -0.07 -22.55 16 30 H 0.08 1.37 7.02 -2.39 -0.02 1.35 16 31 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 32 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.41 13.98 8.21 -92.71 -0.76 13.22 16 34 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.05 2.10 8.11 -2.39 -0.02 2.08 16 36 H 0.26 14.19 8.32 -92.71 -0.77 13.42 16 37 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 38 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 39 H 0.06 3.06 8.14 -2.39 -0.02 3.04 16 40 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 41 H 0.17 3.75 6.52 -2.91 -0.02 3.73 16 42 H 0.18 2.41 8.06 -2.91 -0.02 2.39 16 43 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 44 H 0.16 1.01 8.06 -2.91 -0.02 0.98 16 45 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 46 H 0.12 3.21 7.80 -2.91 -0.02 3.18 16 Total: -1.00 -71.84 387.50 3.59 -68.25 By element: Atomic # 1 Polarization: 30.60 SS G_CDS: 0.24 Total: 30.85 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: 5.25 Total: -2.74 kcal Atomic # 7 Polarization: -91.86 SS G_CDS: -3.82 Total: -95.68 kcal Atomic # 8 Polarization: -45.90 SS G_CDS: -0.12 Total: -46.02 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Total: -71.84 3.59 -68.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515244067.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.445 kcal (2) G-P(sol) polarization free energy of solvation -71.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds