Wall clock time and date at job start Sat Apr 11 2020 06:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47484 * 2 1 4 4 C 1.46501 * 119.99934 * 84.99687 * 3 2 1 5 5 C 1.50701 * 109.46926 * 82.04128 * 4 3 2 6 6 C 1.38238 * 119.99909 * 268.11130 * 5 4 3 7 7 C 1.38232 * 120.00135 * 179.74799 * 6 5 4 8 8 C 1.38231 * 119.99473 * 0.54846 * 7 6 5 9 9 C 1.50704 * 119.99968 * 179.72899 * 8 7 6 10 10 C 1.38232 * 120.00587 * 359.70388 * 8 7 6 11 11 C 1.38231 * 120.00071 * 88.39004 * 5 4 3 12 12 S 1.65608 * 120.00179 * 265.00516 * 3 2 1 13 13 O 1.42100 * 106.39806 * 208.38516 * 12 3 2 14 14 O 1.42099 * 106.39660 * 341.30021 * 12 3 2 15 15 N 1.65595 * 107.22084 * 94.84105 * 12 3 2 16 16 C 1.46502 * 120.00008 * 263.54866 * 15 12 3 17 17 C 1.46502 * 119.99911 * 83.54412 * 15 12 3 18 18 H 1.08997 * 109.47011 * 0.02562 * 17 15 12 19 19 C 1.52995 * 109.46885 * 120.00178 * 17 15 12 20 20 C 1.50702 * 109.47179 * 239.99987 * 17 15 12 21 21 H 1.07995 * 119.99941 * 0.02562 * 20 17 15 22 22 C 1.37875 * 119.99820 * 180.02562 * 20 17 15 23 23 N 1.31522 * 119.99557 * 180.02562 * 22 20 17 24 24 Si 1.86800 * 120.00345 * 359.97438 * 22 20 17 25 25 H 1.48503 * 109.46931 * 89.99817 * 24 22 20 26 26 H 1.48497 * 109.47097 * 210.00078 * 24 22 20 27 27 H 1.48500 * 109.46719 * 330.00469 * 24 22 20 28 28 H 1.09003 * 109.47286 * 60.00039 * 1 2 3 29 29 H 1.09001 * 109.46972 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47159 * 299.99838 * 1 2 3 31 31 H 1.09006 * 109.47300 * 239.99760 * 2 1 3 32 32 H 1.08996 * 109.47111 * 120.00290 * 2 1 3 33 33 H 1.09004 * 109.47095 * 322.04115 * 4 3 2 34 34 H 1.09000 * 109.47150 * 202.04414 * 4 3 2 35 35 H 1.08010 * 119.99442 * 359.97438 * 6 5 4 36 36 H 1.07991 * 120.00090 * 180.27826 * 7 6 5 37 37 H 1.09004 * 109.47272 * 269.98025 * 9 8 7 38 38 H 1.09006 * 109.46779 * 29.97611 * 9 8 7 39 39 H 1.09000 * 109.47605 * 149.98032 * 9 8 7 40 40 H 1.07998 * 120.00332 * 179.97438 * 10 8 7 41 41 H 1.08001 * 120.00160 * 359.97438 * 11 5 4 42 42 H 1.08996 * 109.47122 * 95.11921 * 16 15 12 43 43 H 1.09003 * 109.46537 * 215.11532 * 16 15 12 44 44 H 1.08999 * 109.46930 * 335.10988 * 16 15 12 45 45 H 1.09001 * 109.46908 * 299.99609 * 19 17 15 46 46 H 1.08997 * 109.47411 * 60.00105 * 19 17 15 47 47 H 1.09003 * 109.47009 * 180.02562 * 19 17 15 48 48 H 0.97006 * 119.99538 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1086 1.2639 5 6 3.4629 1.7329 1.9180 6 6 3.5068 0.6896 2.8238 7 6 4.7044 0.3416 3.4198 8 6 5.8561 1.0442 3.1186 9 6 7.1607 0.6688 3.7729 10 6 5.8114 2.0909 2.2167 11 6 4.6147 2.4353 1.6165 12 16 2.4122 2.1202 -1.4287 13 8 3.4133 3.0806 -1.1210 14 8 2.5982 1.0811 -2.3799 15 7 1.0816 2.9734 -1.9224 16 6 0.1529 2.3861 -2.8914 17 6 0.8330 4.3155 -1.3901 18 1 1.6244 4.5806 -0.6891 19 6 0.8119 5.3243 -2.5401 20 6 -0.4958 4.3359 -0.6795 21 1 -1.0950 3.4388 -0.6290 22 6 -0.9465 5.4998 -0.0938 23 7 -2.1060 5.5175 0.5268 24 14 0.0902 7.0513 -0.1804 25 1 -0.2688 7.8191 -1.3999 26 1 -0.1645 7.8846 1.0221 27 1 1.5280 6.6836 -0.2325 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.3320 1.8492 1.9258 34 1 2.1449 3.1810 1.0693 35 1 2.6058 0.1440 3.0630 36 1 4.7395 -0.4764 4.1240 37 1 7.2780 1.2317 4.6990 38 1 7.1624 -0.3986 3.9939 39 1 7.9854 0.9017 3.0993 40 1 6.7111 2.6401 1.9817 41 1 4.5797 3.2531 0.9119 42 1 -0.6729 1.9114 -2.3616 43 1 -0.2355 3.1690 -3.5429 44 1 0.6763 1.6412 -3.4908 45 1 1.7730 5.3096 -3.0540 46 1 0.0207 5.0594 -3.2414 47 1 0.6274 6.3230 -2.1440 48 1 -2.4233 6.3365 0.9386 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554706349.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:07 Heat of formation + Delta-G solvation = -47.467144 kcal Electronic energy + Delta-G solvation = -29614.414973 eV Core-core repulsion = 25796.314161 eV Total energy + Delta-G solvation = -3818.100812 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.40440 -36.90157 -36.57972 -36.37544 -35.35780 -33.05788 -32.54605 -30.80877 -30.31787 -29.99884 -27.64049 -25.79535 -25.03102 -24.49236 -22.77324 -22.16459 -20.90789 -20.59268 -18.36120 -17.44378 -17.06913 -16.60300 -16.19184 -15.71389 -15.29221 -15.15047 -14.99113 -14.46553 -13.80324 -13.69362 -13.61220 -13.52445 -13.31250 -13.26474 -12.84068 -12.55659 -12.48265 -12.33226 -12.17630 -12.14887 -12.00329 -11.83763 -11.71358 -11.60888 -11.42391 -11.27471 -11.16453 -11.07076 -11.02070 -10.69373 -10.58444 -10.50295 -10.17030 -9.62729 -9.44888 -8.84325 -8.76912 -8.69003 -8.45600 -8.09365 -6.19896 -4.20991 1.04592 1.47041 1.55038 3.19816 3.32083 3.33028 3.34952 3.84896 4.04225 4.29492 4.78823 4.84186 4.88046 5.01178 5.08470 5.10964 5.17008 5.25368 5.43225 5.48574 5.50912 5.57553 5.60696 5.66796 5.73558 5.84743 5.92005 5.96870 6.03805 6.09160 6.15415 6.19201 6.24621 6.25305 6.35961 6.39009 6.50293 6.53530 6.53924 6.61551 6.69486 6.76547 6.85021 6.91753 7.15830 7.26881 7.34753 7.60707 8.40030 8.84610 9.41197 10.92344 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011963 B = 0.004586 C = 0.004091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.982671 B = 6103.711546 C = 6843.168371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.116 3.884 3 N -0.996 5.996 4 C 0.168 3.832 5 C -0.107 4.107 6 C -0.101 4.101 7 C -0.129 4.129 8 C -0.092 4.092 9 C -0.112 4.112 10 C -0.125 4.125 11 C -0.096 4.096 12 S 2.781 3.219 13 O -0.980 6.980 14 O -0.994 6.994 15 N -0.985 5.985 16 C 0.098 3.902 17 C 0.242 3.758 18 H 0.051 0.949 19 C -0.161 4.161 20 C -0.525 4.525 21 H 0.083 0.917 22 C 0.077 3.923 23 N -0.892 5.892 24 Si 0.874 3.126 25 H -0.276 1.276 26 H -0.294 1.294 27 H -0.262 1.262 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.121 0.879 36 H 0.117 0.883 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.119 0.881 41 H 0.140 0.860 42 H 0.051 0.949 43 H 0.072 0.928 44 H 0.065 0.935 45 H 0.035 0.965 46 H 0.059 0.941 47 H 0.049 0.951 48 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.487 -10.235 3.234 15.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.010 4.010 3 N -0.833 5.833 4 C 0.042 3.958 5 C -0.109 4.109 6 C -0.120 4.120 7 C -0.147 4.147 8 C -0.092 4.092 9 C -0.169 4.169 10 C -0.144 4.144 11 C -0.115 4.115 12 S 2.792 3.208 13 O -0.964 6.964 14 O -0.978 6.978 15 N -0.826 5.826 16 C -0.048 4.048 17 C 0.137 3.863 18 H 0.068 0.932 19 C -0.219 4.219 20 C -0.564 4.564 21 H 0.101 0.899 22 C -0.126 4.126 23 N -0.530 5.530 24 Si 0.703 3.297 25 H -0.203 1.203 26 H -0.222 1.222 27 H -0.187 1.187 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.113 0.887 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.137 0.863 41 H 0.158 0.842 42 H 0.069 0.931 43 H 0.090 0.910 44 H 0.083 0.917 45 H 0.054 0.946 46 H 0.078 0.922 47 H 0.067 0.933 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.173 -10.199 2.872 15.398 hybrid contribution -0.158 1.049 0.251 1.090 sum 11.015 -9.151 3.123 14.657 Atomic orbital electron populations 1.22241 0.95777 1.01607 1.03589 1.21252 0.94489 0.81955 1.03318 1.57980 1.81399 1.22325 1.21562 1.20112 0.93630 0.96883 0.85156 1.20379 0.96321 0.96594 0.97604 1.21040 0.97741 0.96648 0.96556 1.20937 0.92454 1.00406 1.00928 1.19911 0.95454 0.96251 0.97571 1.20770 0.94302 1.01490 1.00320 1.21049 0.98097 0.97587 0.97619 1.21494 0.91878 0.99748 0.98390 1.01850 0.73807 0.72592 0.72599 1.93541 1.56321 1.61901 1.84662 1.93510 1.86060 1.57878 1.60370 1.57496 1.42892 1.27363 1.54858 1.21322 0.93335 0.98343 0.91807 1.19038 0.98438 0.77156 0.91665 0.93170 1.22429 0.99879 0.99447 1.00194 1.21203 1.02541 0.98529 1.34106 0.89851 1.24882 0.94690 0.98436 0.94611 1.69875 1.19090 1.28141 1.35853 0.87072 0.81833 0.83946 0.76799 1.20327 1.22158 1.18673 0.91955 0.92136 0.91719 0.89653 0.90747 0.89431 0.88678 0.86133 0.86448 0.91397 0.91812 0.91735 0.86279 0.84222 0.93061 0.90952 0.91670 0.94631 0.92219 0.93299 0.92470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 10.24 37.16 0.38 -1.92 16 2 C 0.12 1.58 6.37 -4.05 -0.03 1.55 16 3 N -1.00 -16.19 2.83 -115.66 -0.33 -16.52 16 4 C 0.17 2.66 5.51 -5.19 -0.03 2.64 16 5 C -0.11 -1.60 5.43 -104.62 -0.57 -2.17 16 6 C -0.10 -1.29 9.22 -39.58 -0.37 -1.66 16 7 C -0.13 -1.52 9.70 -39.59 -0.38 -1.91 16 8 C -0.09 -1.10 5.88 -104.62 -0.62 -1.71 16 9 C -0.11 -0.99 10.01 36.01 0.36 -0.63 16 10 C -0.13 -1.69 9.70 -39.58 -0.38 -2.07 16 11 C -0.10 -1.50 9.39 -39.58 -0.37 -1.87 16 12 S 2.78 52.79 6.00 -107.50 -0.65 52.14 16 13 O -0.98 -20.36 14.25 -57.17 -0.81 -21.17 16 14 O -0.99 -19.71 15.06 -57.17 -0.86 -20.57 16 15 N -0.99 -19.36 3.12 -115.85 -0.36 -19.72 16 16 C 0.10 1.69 9.83 59.85 0.59 2.28 16 17 C 0.24 5.39 2.19 -69.08 -0.15 5.24 16 18 H 0.05 1.17 5.80 -51.93 -0.30 0.87 16 19 C -0.16 -3.39 8.64 37.16 0.32 -3.07 16 20 C -0.52 -13.25 8.95 -34.44 -0.31 -13.56 16 21 H 0.08 2.26 7.75 -52.49 -0.41 1.85 16 22 C 0.08 2.05 5.45 -17.82 -0.10 1.96 16 23 N -0.89 -25.35 13.96 55.43 0.77 -24.58 16 24 Si 0.87 20.68 24.37 -169.99 -4.14 16.54 16 25 H -0.28 -6.40 6.87 56.52 0.39 -6.01 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.26 -6.03 6.53 56.52 0.37 -5.66 16 28 H 0.06 0.91 6.75 -51.93 -0.35 0.56 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.90 8.12 -51.93 -0.42 0.48 16 31 H 0.09 1.18 6.88 -51.93 -0.36 0.83 16 32 H 0.07 0.86 7.56 -51.93 -0.39 0.47 16 33 H 0.09 1.27 8.04 -51.93 -0.42 0.85 16 34 H 0.09 1.68 7.25 -51.93 -0.38 1.30 16 35 H 0.12 1.31 7.99 -52.48 -0.42 0.89 16 36 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 39 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 40 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 41 H 0.14 2.37 6.61 -52.49 -0.35 2.02 16 42 H 0.05 0.86 6.72 -51.93 -0.35 0.51 16 43 H 0.07 1.21 6.45 -51.93 -0.33 0.87 16 44 H 0.06 1.03 6.87 -51.93 -0.36 0.67 16 45 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.06 1.18 6.69 -51.93 -0.35 0.84 16 47 H 0.05 1.07 3.27 -51.93 -0.17 0.90 16 48 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 384.37 15.07 5.79 5.79 Total: -1.00 -30.38 384.37 -9.72 -40.10 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -7.48 Total: 4.89 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: -1.65 Total: -16.90 kcal Atomic # 7 Polarization: -60.90 SS G_CDS: 0.08 Total: -60.82 kcal Atomic # 8 Polarization: -40.07 SS G_CDS: -1.68 Total: -41.74 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.14 Total: 16.54 kcal Atomic # 16 Polarization: 52.79 SS G_CDS: -0.65 Total: 52.14 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.38 -9.72 -40.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554706349.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.364 kcal (2) G-P(sol) polarization free energy of solvation -30.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds