Wall clock time and date at job start Sat Apr 11 2020 06:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47484 * 2 1 4 4 C 1.46501 * 119.99934 * 84.99687 * 3 2 1 5 5 C 1.50701 * 109.46926 * 82.04128 * 4 3 2 6 6 C 1.38238 * 119.99909 * 268.11130 * 5 4 3 7 7 C 1.38232 * 120.00135 * 179.74799 * 6 5 4 8 8 C 1.38231 * 119.99473 * 0.54846 * 7 6 5 9 9 C 1.50704 * 119.99968 * 179.72899 * 8 7 6 10 10 C 1.38232 * 120.00587 * 359.70388 * 8 7 6 11 11 C 1.38231 * 120.00071 * 88.39004 * 5 4 3 12 12 S 1.65608 * 120.00179 * 265.00516 * 3 2 1 13 13 O 1.42100 * 106.39806 * 208.38516 * 12 3 2 14 14 O 1.42099 * 106.39660 * 341.30021 * 12 3 2 15 15 N 1.65595 * 107.22084 * 94.84105 * 12 3 2 16 16 C 1.46502 * 120.00008 * 263.54866 * 15 12 3 17 17 C 1.46502 * 119.99911 * 83.54412 * 15 12 3 18 18 H 1.08997 * 109.47011 * 0.02562 * 17 15 12 19 19 C 1.52995 * 109.46885 * 120.00178 * 17 15 12 20 20 C 1.50702 * 109.47179 * 239.99987 * 17 15 12 21 21 H 1.07995 * 119.99941 * 0.02562 * 20 17 15 22 22 C 1.37875 * 119.99820 * 180.02562 * 20 17 15 23 23 N 1.31522 * 119.99557 * 180.02562 * 22 20 17 24 24 Si 1.86800 * 120.00345 * 359.97438 * 22 20 17 25 25 H 1.48503 * 109.46931 * 89.99817 * 24 22 20 26 26 H 1.48497 * 109.47097 * 210.00078 * 24 22 20 27 27 H 1.48500 * 109.46719 * 330.00469 * 24 22 20 28 28 H 1.09003 * 109.47286 * 60.00039 * 1 2 3 29 29 H 1.09001 * 109.46972 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47159 * 299.99838 * 1 2 3 31 31 H 1.09006 * 109.47300 * 239.99760 * 2 1 3 32 32 H 1.08996 * 109.47111 * 120.00290 * 2 1 3 33 33 H 1.09004 * 109.47095 * 322.04115 * 4 3 2 34 34 H 1.09000 * 109.47150 * 202.04414 * 4 3 2 35 35 H 1.08010 * 119.99442 * 359.97438 * 6 5 4 36 36 H 1.07991 * 120.00090 * 180.27826 * 7 6 5 37 37 H 1.09004 * 109.47272 * 269.98025 * 9 8 7 38 38 H 1.09006 * 109.46779 * 29.97611 * 9 8 7 39 39 H 1.09000 * 109.47605 * 149.98032 * 9 8 7 40 40 H 1.07998 * 120.00332 * 179.97438 * 10 8 7 41 41 H 1.08001 * 120.00160 * 359.97438 * 11 5 4 42 42 H 1.08996 * 109.47122 * 95.11921 * 16 15 12 43 43 H 1.09003 * 109.46537 * 215.11532 * 16 15 12 44 44 H 1.08999 * 109.46930 * 335.10988 * 16 15 12 45 45 H 1.09001 * 109.46908 * 299.99609 * 19 17 15 46 46 H 1.08997 * 109.47411 * 60.00105 * 19 17 15 47 47 H 1.09003 * 109.47009 * 180.02562 * 19 17 15 48 48 H 0.97006 * 119.99538 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1086 1.2639 5 6 3.4629 1.7329 1.9180 6 6 3.5068 0.6896 2.8238 7 6 4.7044 0.3416 3.4198 8 6 5.8561 1.0442 3.1186 9 6 7.1607 0.6688 3.7729 10 6 5.8114 2.0909 2.2167 11 6 4.6147 2.4353 1.6165 12 16 2.4122 2.1202 -1.4287 13 8 3.4133 3.0806 -1.1210 14 8 2.5982 1.0811 -2.3799 15 7 1.0816 2.9734 -1.9224 16 6 0.1529 2.3861 -2.8914 17 6 0.8330 4.3155 -1.3901 18 1 1.6244 4.5806 -0.6891 19 6 0.8119 5.3243 -2.5401 20 6 -0.4958 4.3359 -0.6795 21 1 -1.0950 3.4388 -0.6290 22 6 -0.9465 5.4998 -0.0938 23 7 -2.1060 5.5175 0.5268 24 14 0.0902 7.0513 -0.1804 25 1 -0.2688 7.8191 -1.3999 26 1 -0.1645 7.8846 1.0221 27 1 1.5280 6.6836 -0.2325 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.3320 1.8492 1.9258 34 1 2.1449 3.1810 1.0693 35 1 2.6058 0.1440 3.0630 36 1 4.7395 -0.4764 4.1240 37 1 7.2780 1.2317 4.6990 38 1 7.1624 -0.3986 3.9939 39 1 7.9854 0.9017 3.0993 40 1 6.7111 2.6401 1.9817 41 1 4.5797 3.2531 0.9119 42 1 -0.6729 1.9114 -2.3616 43 1 -0.2355 3.1690 -3.5429 44 1 0.6763 1.6412 -3.4908 45 1 1.7730 5.3096 -3.0540 46 1 0.0207 5.0594 -3.2414 47 1 0.6274 6.3230 -2.1440 48 1 -2.4233 6.3365 0.9386 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000554706349.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:06 Heat of formation + Delta-G solvation = -65.852521 kcal Electronic energy + Delta-G solvation = -29615.212222 eV Core-core repulsion = 25796.314161 eV Total energy + Delta-G solvation = -3818.898062 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.43002 -38.47062 -38.11283 -37.70386 -36.93356 -34.50807 -34.04788 -31.84153 -31.78229 -31.34683 -28.66115 -27.37385 -26.90785 -25.54479 -23.85524 -23.27756 -22.59291 -21.69056 -19.80531 -19.03502 -18.62438 -18.40077 -17.55667 -16.94191 -16.84452 -16.27238 -16.02805 -15.95393 -15.31980 -15.14086 -14.81885 -14.60915 -14.50786 -14.46901 -14.28209 -14.13552 -13.85969 -13.74309 -13.55241 -13.50142 -13.21306 -13.13127 -13.09213 -12.98411 -12.82462 -12.77437 -12.67630 -12.29170 -12.19601 -12.10071 -12.01401 -11.76504 -11.71193 -11.47874 -11.31315 -10.74258 -10.09887 -9.79330 -9.75392 -9.43244 -8.27521 -6.30219 -0.40834 0.41166 0.53087 1.29943 1.38981 1.45275 1.90835 2.31543 2.47208 2.88963 3.07019 3.32107 3.70127 3.86845 3.98591 4.02802 4.12485 4.19025 4.24723 4.38273 4.42876 4.48453 4.59254 4.61690 4.63058 4.66924 4.75321 4.76572 4.80185 4.86349 4.87604 4.92138 4.93383 4.99563 5.05420 5.14907 5.21068 5.28653 5.31180 5.42782 5.48736 5.53809 5.55167 5.62000 5.72363 5.78344 5.91186 6.16283 6.36828 6.75414 7.34660 8.87639 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011963 B = 0.004586 C = 0.004091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.982671 B = 6103.711546 C = 6843.168371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.112 3.888 3 N -0.993 5.993 4 C 0.170 3.830 5 C -0.124 4.124 6 C -0.101 4.101 7 C -0.128 4.128 8 C -0.091 4.091 9 C -0.111 4.111 10 C -0.137 4.137 11 C -0.123 4.123 12 S 2.788 3.212 13 O -1.002 7.002 14 O -1.002 7.002 15 N -0.991 5.991 16 C 0.094 3.906 17 C 0.245 3.755 18 H 0.040 0.960 19 C -0.162 4.162 20 C -0.509 4.509 21 H 0.058 0.942 22 C 0.032 3.968 23 N -0.934 5.934 24 Si 0.918 3.082 25 H -0.264 1.264 26 H -0.297 1.297 27 H -0.255 1.255 28 H 0.043 0.957 29 H 0.089 0.911 30 H 0.054 0.946 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.067 0.933 35 H 0.142 0.858 36 H 0.149 0.851 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.130 0.870 41 H 0.114 0.886 42 H 0.051 0.949 43 H 0.077 0.923 44 H 0.081 0.919 45 H 0.053 0.947 46 H 0.069 0.931 47 H 0.042 0.958 48 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.914 -11.871 3.930 17.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.013 4.013 3 N -0.832 5.832 4 C 0.044 3.956 5 C -0.126 4.126 6 C -0.120 4.120 7 C -0.145 4.145 8 C -0.092 4.092 9 C -0.167 4.167 10 C -0.155 4.155 11 C -0.142 4.142 12 S 2.798 3.202 13 O -0.986 6.986 14 O -0.987 6.987 15 N -0.831 5.831 16 C -0.051 4.051 17 C 0.139 3.861 18 H 0.058 0.942 19 C -0.221 4.221 20 C -0.549 4.549 21 H 0.076 0.924 22 C -0.168 4.168 23 N -0.574 5.574 24 Si 0.746 3.254 25 H -0.190 1.190 26 H -0.225 1.225 27 H -0.180 1.180 28 H 0.062 0.938 29 H 0.107 0.893 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.085 0.915 35 H 0.160 0.840 36 H 0.167 0.833 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.148 0.852 41 H 0.132 0.868 42 H 0.070 0.930 43 H 0.096 0.904 44 H 0.099 0.901 45 H 0.072 0.928 46 H 0.088 0.912 47 H 0.060 0.940 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 12.610 -11.845 3.538 17.659 hybrid contribution -0.575 1.423 0.078 1.537 sum 12.035 -10.422 3.615 16.326 Atomic orbital electron populations 1.22216 0.95465 1.03033 1.02124 1.21481 0.94694 0.80524 1.04589 1.57827 1.81396 1.23260 1.20717 1.20073 0.95037 0.95380 0.85074 1.20300 0.95308 0.97992 0.98958 1.21280 0.99231 0.95828 0.95629 1.21338 0.91747 1.00757 1.00694 1.20325 0.97164 0.95127 0.96540 1.20832 0.92563 1.02728 1.00581 1.21249 0.97705 0.98489 0.98070 1.21434 0.93398 1.00043 0.99290 1.01535 0.73470 0.72261 0.72924 1.93516 1.57282 1.62763 1.85014 1.93490 1.86181 1.57834 1.61160 1.57482 1.43378 1.26733 1.55502 1.21468 0.93256 0.98819 0.91595 1.18816 0.96237 0.79043 0.92000 0.94228 1.22401 1.01398 0.98431 0.99885 1.21311 1.03067 0.97244 1.33250 0.92418 1.25476 0.95486 1.01121 0.94681 1.69986 1.20870 1.28894 1.37678 0.86327 0.80893 0.81105 0.77028 1.19006 1.22492 1.17956 0.93836 0.89266 0.92708 0.89668 0.88077 0.88321 0.91453 0.84001 0.83337 0.90226 0.90103 0.91156 0.85182 0.86814 0.93042 0.90418 0.90067 0.92783 0.91174 0.93952 0.92532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.31 10.24 71.98 0.74 -3.57 16 2 C 0.11 2.89 6.37 86.38 0.55 3.44 16 3 N -0.99 -32.21 2.83 -519.85 -1.47 -33.68 16 4 C 0.17 5.48 5.51 85.63 0.47 5.95 16 5 C -0.12 -3.67 5.43 -19.87 -0.11 -3.78 16 6 C -0.10 -2.37 9.22 22.27 0.21 -2.17 16 7 C -0.13 -2.61 9.70 22.27 0.22 -2.40 16 8 C -0.09 -1.97 5.88 -19.87 -0.12 -2.09 16 9 C -0.11 -1.59 10.01 71.24 0.71 -0.88 16 10 C -0.14 -3.61 9.70 22.27 0.22 -3.39 16 11 C -0.12 -3.91 9.39 22.27 0.21 -3.70 16 12 S 2.79 106.32 6.00 -56.49 -0.34 105.98 16 13 O -1.00 -42.60 14.25 -128.00 -1.82 -44.42 16 14 O -1.00 -39.20 15.06 -128.00 -1.93 -41.13 16 15 N -0.99 -38.99 3.12 -520.45 -1.62 -40.62 16 16 C 0.09 3.21 9.83 127.77 1.26 4.46 16 17 C 0.24 10.96 2.19 44.24 0.10 11.06 16 18 H 0.04 1.88 5.80 -2.39 -0.01 1.87 16 19 C -0.16 -6.69 8.64 71.98 0.62 -6.07 16 20 C -0.51 -26.17 8.95 25.60 0.23 -25.94 16 21 H 0.06 3.22 7.75 -2.91 -0.02 3.20 16 22 C 0.03 1.71 5.45 84.65 0.46 2.17 16 23 N -0.93 -54.23 13.96 21.45 0.30 -53.93 16 24 Si 0.92 42.70 24.37 68.60 1.67 44.37 16 25 H -0.26 -11.69 6.87 99.48 0.68 -11.00 16 26 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 27 H -0.26 -11.48 6.53 99.48 0.65 -10.83 16 28 H 0.04 1.26 6.75 -2.39 -0.02 1.24 16 29 H 0.09 1.73 8.14 -2.39 -0.02 1.72 16 30 H 0.05 1.49 8.12 -2.39 -0.02 1.47 16 31 H 0.09 2.24 6.88 -2.38 -0.02 2.22 16 32 H 0.10 2.09 7.56 -2.39 -0.02 2.07 16 33 H 0.10 2.87 8.04 -2.39 -0.02 2.86 16 34 H 0.07 2.52 7.25 -2.39 -0.02 2.50 16 35 H 0.14 2.63 7.99 -2.91 -0.02 2.61 16 36 H 0.15 2.11 8.06 -2.92 -0.02 2.08 16 37 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.08 0.91 8.09 -2.38 -0.02 0.89 16 39 H 0.07 0.94 8.09 -2.39 -0.02 0.92 16 40 H 0.13 2.97 8.06 -2.91 -0.02 2.94 16 41 H 0.11 4.12 6.61 -2.91 -0.02 4.11 16 42 H 0.05 1.74 6.72 -2.39 -0.02 1.72 16 43 H 0.08 2.54 6.45 -2.39 -0.02 2.52 16 44 H 0.08 2.50 6.87 -2.39 -0.02 2.48 16 45 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.07 2.70 6.69 -2.39 -0.02 2.68 16 47 H 0.04 1.79 3.27 -2.39 -0.01 1.78 16 48 H 0.27 14.65 8.31 -92.70 -0.77 13.88 16 Total: -1.00 -66.01 384.37 1.41 -64.60 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: 0.87 Total: 25.73 kcal Atomic # 6 Polarization: -32.65 SS G_CDS: 5.76 Total: -26.89 kcal Atomic # 7 Polarization: -125.43 SS G_CDS: -2.80 Total: -128.23 kcal Atomic # 8 Polarization: -81.80 SS G_CDS: -3.75 Total: -85.55 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 1.67 Total: 44.37 kcal Atomic # 16 Polarization: 106.32 SS G_CDS: -0.34 Total: 105.98 kcal Total: -66.01 1.41 -64.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554706349.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.251 kcal (2) G-P(sol) polarization free energy of solvation -66.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds