Wall clock time and date at job start Sat Apr 11 2020 06:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.46900 * 2 1 4 4 C 1.46509 * 119.99960 * 277.10176 * 3 2 1 5 5 C 1.50694 * 109.46965 * 274.99971 * 4 3 2 6 6 C 1.38233 * 120.00609 * 269.72680 * 5 4 3 7 7 C 1.38230 * 120.00288 * 179.74794 * 6 5 4 8 8 C 1.38232 * 120.00239 * 0.54842 * 7 6 5 9 9 C 1.50701 * 120.00491 * 179.72580 * 8 7 6 10 10 C 1.38243 * 119.99672 * 359.70630 * 8 7 6 11 11 C 1.38233 * 119.99737 * 0.02562 * 10 8 7 12 12 S 1.65596 * 120.00124 * 97.10611 * 3 2 1 13 13 O 1.42100 * 106.40650 * 149.30772 * 12 3 2 14 14 O 1.42109 * 106.40213 * 16.38873 * 12 3 2 15 15 N 1.65601 * 107.22004 * 262.85111 * 12 3 2 16 16 C 1.46505 * 119.99782 * 267.48106 * 15 12 3 17 17 C 1.46495 * 120.00329 * 87.47040 * 15 12 3 18 18 H 1.09010 * 109.46867 * 354.95796 * 17 15 12 19 19 C 1.52993 * 109.47798 * 234.95626 * 17 15 12 20 20 C 1.50701 * 109.46914 * 114.95293 * 17 15 12 21 21 H 1.07994 * 120.00135 * 0.02562 * 20 17 15 22 22 C 1.37881 * 119.99894 * 180.02562 * 20 17 15 23 23 N 1.31509 * 119.99923 * 0.02562 * 22 20 17 24 24 Si 1.86804 * 119.99691 * 180.02562 * 22 20 17 25 25 H 1.48497 * 109.47086 * 269.99626 * 24 22 20 26 26 H 1.48501 * 109.47049 * 30.00295 * 24 22 20 27 27 H 1.48505 * 109.46677 * 150.00023 * 24 22 20 28 28 H 1.08999 * 109.47172 * 57.33487 * 1 2 3 29 29 H 1.08999 * 109.46613 * 177.34281 * 1 2 3 30 30 H 1.09008 * 109.46867 * 297.33703 * 1 2 3 31 31 H 1.09000 * 109.47194 * 239.99875 * 2 1 3 32 32 H 1.09001 * 109.47311 * 119.99890 * 2 1 3 33 33 H 1.08989 * 109.46895 * 35.00134 * 4 3 2 34 34 H 1.08998 * 109.46756 * 155.00327 * 4 3 2 35 35 H 1.08010 * 119.99474 * 359.97438 * 6 5 4 36 36 H 1.08003 * 119.99942 * 180.27713 * 7 6 5 37 37 H 1.08999 * 109.46852 * 269.97821 * 9 8 7 38 38 H 1.08998 * 109.47043 * 29.97863 * 9 8 7 39 39 H 1.08993 * 109.47177 * 149.98118 * 9 8 7 40 40 H 1.08000 * 119.99567 * 180.02562 * 10 8 7 41 41 H 1.08003 * 119.99647 * 179.97438 * 11 10 8 42 42 H 1.09004 * 109.46622 * 269.99482 * 16 15 12 43 43 H 1.08999 * 109.47209 * 29.99338 * 16 15 12 44 44 H 1.08994 * 109.47112 * 149.99764 * 16 15 12 45 45 H 1.08997 * 109.47560 * 172.38075 * 19 17 15 46 46 H 1.09003 * 109.46636 * 292.38091 * 19 17 15 47 47 H 1.09005 * 109.47270 * 52.37498 * 19 17 15 48 48 H 0.97003 * 119.99806 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1146 2.1242 -1.2591 5 6 3.4288 1.8122 -1.9271 6 6 4.5417 2.5872 -1.6592 7 6 5.7484 2.2978 -2.2680 8 6 5.8398 1.2403 -3.1536 9 6 7.1539 0.9286 -3.8221 10 6 4.7256 0.4685 -3.4257 11 6 3.5202 0.7545 -2.8125 12 16 2.4616 2.1028 1.4231 13 8 3.4899 3.0288 1.1003 14 8 2.6276 1.0556 2.3693 15 7 1.1697 3.0003 1.9409 16 6 1.0647 4.4140 1.5711 17 6 0.1319 2.3806 2.7684 18 1 0.3321 1.3133 2.8635 19 6 -1.2346 2.5865 2.1120 20 6 0.1334 3.0157 4.1351 21 1 0.8369 3.8024 4.3641 22 6 -0.7632 2.5922 5.0931 23 7 -1.6195 1.6337 4.8144 24 14 -0.7617 3.3799 6.7869 25 1 0.1625 2.6345 7.6787 26 1 -0.3122 4.7910 6.6762 27 1 -2.1343 3.3406 7.3523 28 1 -0.3633 0.5547 -0.8651 29 1 -0.3632 -1.0266 -0.0476 30 1 -0.3633 0.4720 0.9130 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.2950 1.8334 -1.9160 34 1 2.0553 3.1933 -1.0554 35 1 4.4691 3.4167 -0.9712 36 1 6.6189 2.9006 -2.0552 37 1 7.2251 1.4813 -4.7589 38 1 7.9737 1.2195 -3.1653 39 1 7.2134 -0.1405 -4.0257 40 1 4.7971 -0.3580 -4.1173 41 1 2.6497 0.1518 -3.0254 42 1 1.5590 5.0248 2.3266 43 1 1.5434 4.5734 0.6049 44 1 0.0138 4.6956 1.5068 45 1 -1.9876 2.0131 2.6525 46 1 -1.4949 3.6447 2.1392 47 1 -1.1949 2.2487 1.0763 48 1 -2.2505 1.3361 5.4883 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554706350.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:11 Heat of formation + Delta-G solvation = -54.505609 kcal Electronic energy + Delta-G solvation = -29279.771511 eV Core-core repulsion = 25461.365488 eV Total energy + Delta-G solvation = -3818.406023 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.51147 -36.75720 -36.60309 -36.14159 -35.16648 -33.13192 -32.56327 -30.90422 -30.36600 -29.05897 -27.70855 -25.66579 -25.09298 -24.61340 -22.84802 -22.20396 -20.82073 -20.51762 -18.34063 -17.39053 -16.93863 -16.39299 -16.07693 -15.86072 -15.28381 -15.11915 -14.88187 -14.34560 -13.84712 -13.80193 -13.55826 -13.40670 -13.34332 -13.17969 -12.78674 -12.65066 -12.57664 -12.18176 -12.03325 -11.95922 -11.80813 -11.64207 -11.52394 -11.31852 -11.22496 -11.16834 -11.07522 -10.97287 -10.78689 -10.78476 -10.60866 -10.37220 -10.24089 -9.98946 -9.29136 -8.91571 -8.86165 -8.54847 -8.44653 -7.94602 -6.06861 -4.12220 1.08160 1.41245 1.45558 3.30022 3.36341 3.38986 3.43718 3.81584 4.13609 4.41607 4.72106 4.75300 4.86951 4.95766 4.96900 5.06448 5.21407 5.25175 5.36097 5.42015 5.49108 5.52536 5.53120 5.64092 5.67728 5.72119 5.79845 5.89950 6.01316 6.06621 6.13499 6.15567 6.31683 6.41713 6.43504 6.53147 6.60633 6.62407 6.67421 6.74203 6.81478 6.86164 7.01515 7.05735 7.46562 7.64435 7.80043 8.02719 8.27980 8.89562 9.53433 10.99302 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023000 B = 0.003327 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.098015 B = 8413.407099 C = 8889.548517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.114 3.886 3 N -1.004 6.004 4 C 0.169 3.831 5 C -0.113 4.113 6 C -0.091 4.091 7 C -0.126 4.126 8 C -0.089 4.089 9 C -0.113 4.113 10 C -0.130 4.130 11 C -0.101 4.101 12 S 2.775 3.225 13 O -0.992 6.992 14 O -0.972 6.972 15 N -0.991 5.991 16 C 0.109 3.891 17 C 0.272 3.728 18 H 0.055 0.945 19 C -0.146 4.146 20 C -0.521 4.521 21 H 0.061 0.939 22 C 0.064 3.936 23 N -0.891 5.891 24 Si 0.896 3.104 25 H -0.279 1.279 26 H -0.274 1.274 27 H -0.286 1.286 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.140 0.860 36 H 0.120 0.880 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.048 0.952 43 H 0.048 0.952 44 H 0.071 0.929 45 H 0.087 0.913 46 H 0.035 0.965 47 H 0.016 0.984 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.753 -1.123 -17.962 19.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.011 4.011 3 N -0.841 5.841 4 C 0.043 3.957 5 C -0.114 4.114 6 C -0.110 4.110 7 C -0.144 4.144 8 C -0.090 4.090 9 C -0.170 4.170 10 C -0.148 4.148 11 C -0.120 4.120 12 S 2.786 3.214 13 O -0.976 6.976 14 O -0.955 6.955 15 N -0.834 5.834 16 C -0.038 4.038 17 C 0.169 3.831 18 H 0.072 0.928 19 C -0.206 4.206 20 C -0.560 4.560 21 H 0.079 0.921 22 C -0.138 4.138 23 N -0.530 5.530 24 Si 0.724 3.276 25 H -0.205 1.205 26 H -0.199 1.199 27 H -0.212 1.212 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.109 0.891 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.158 0.842 36 H 0.138 0.862 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.136 0.864 41 H 0.138 0.862 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.090 0.910 45 H 0.106 0.894 46 H 0.054 0.946 47 H 0.035 0.965 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.430 -1.328 -17.431 19.408 hybrid contribution -0.496 0.409 0.787 1.016 sum 7.934 -0.919 -16.644 18.461 Atomic orbital electron populations 1.22360 0.95798 1.02178 1.03519 1.21280 0.94565 0.81767 1.03493 1.58298 1.81536 1.22490 1.21756 1.20025 0.93930 0.95982 0.85717 1.20312 0.96568 0.96640 0.97927 1.21454 0.91966 0.99810 0.97779 1.21062 0.97974 0.97741 0.97594 1.19941 0.95618 0.95896 0.97524 1.20778 0.94156 1.01823 1.00223 1.20950 0.92711 1.00122 1.00989 1.21014 0.97645 0.96729 0.96570 1.02142 0.73632 0.73109 0.72564 1.93496 1.55124 1.64191 1.84761 1.93585 1.85553 1.57080 1.59331 1.57787 1.42812 1.18719 1.64036 1.21161 1.02576 0.82059 0.97955 1.18661 0.82663 0.93662 0.88076 0.92766 1.22143 1.01005 1.00713 0.96696 1.21360 1.17960 1.20556 0.96151 0.92097 1.24889 0.95225 0.94976 0.98694 1.69866 1.20529 1.28169 1.34403 0.86523 0.77205 0.79740 0.84111 1.20542 1.19887 1.21181 0.92647 0.91862 0.90608 0.91067 0.89074 0.89814 0.89835 0.84212 0.86205 0.91371 0.91635 0.91740 0.86397 0.86205 0.93332 0.93382 0.91029 0.89407 0.94580 0.96504 0.92757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.46 10.15 37.16 0.38 -2.09 16 2 C 0.11 1.63 6.39 -4.04 -0.03 1.60 16 3 N -1.00 -15.52 2.83 -115.66 -0.33 -15.85 16 4 C 0.17 2.15 5.47 -5.19 -0.03 2.12 16 5 C -0.11 -1.46 5.46 -104.63 -0.57 -2.03 16 6 C -0.09 -1.27 9.11 -39.59 -0.36 -1.63 16 7 C -0.13 -1.55 9.70 -39.59 -0.38 -1.93 16 8 C -0.09 -0.99 5.88 -104.62 -0.62 -1.60 16 9 C -0.11 -0.91 10.01 36.01 0.36 -0.55 16 10 C -0.13 -1.39 9.70 -39.58 -0.38 -1.78 16 11 C -0.10 -1.15 9.36 -39.58 -0.37 -1.52 16 12 S 2.78 55.18 5.96 -107.50 -0.64 54.54 16 13 O -0.99 -19.92 14.31 -57.17 -0.82 -20.74 16 14 O -0.97 -23.14 15.26 -57.17 -0.87 -24.01 16 15 N -0.99 -20.38 3.12 -115.85 -0.36 -20.74 16 16 C 0.11 1.91 9.77 59.85 0.58 2.49 16 17 C 0.27 6.53 2.12 -69.09 -0.15 6.38 16 18 H 0.05 1.44 6.63 -51.92 -0.34 1.10 16 19 C -0.15 -3.20 7.92 37.15 0.29 -2.90 16 20 C -0.52 -14.07 8.44 -34.44 -0.29 -14.36 16 21 H 0.06 1.66 7.79 -52.49 -0.41 1.25 16 22 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 23 N -0.89 -24.60 11.41 55.43 0.63 -23.96 16 24 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 28 H 0.05 0.67 7.93 -51.93 -0.41 0.26 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.08 1.28 5.18 -51.92 -0.27 1.01 16 31 H 0.07 0.82 7.64 -51.93 -0.40 0.43 16 32 H 0.09 1.46 6.82 -51.93 -0.35 1.11 16 33 H 0.08 0.87 7.84 -51.94 -0.41 0.46 16 34 H 0.08 1.03 7.06 -51.93 -0.37 0.66 16 35 H 0.14 2.07 6.61 -52.48 -0.35 1.73 16 36 H 0.12 1.27 8.06 -52.48 -0.42 0.84 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 39 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 40 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 41 H 0.12 1.13 7.92 -52.48 -0.42 0.71 16 42 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.05 0.69 7.04 -51.93 -0.37 0.33 16 44 H 0.07 1.20 6.35 -51.93 -0.33 0.87 16 45 H 0.09 2.13 6.32 -51.93 -0.33 1.80 16 46 H 0.04 0.77 6.89 -51.93 -0.36 0.41 16 47 H 0.02 0.31 6.84 -51.93 -0.35 -0.05 16 48 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 388.44 15.07 5.85 5.85 Total: -1.00 -31.57 388.44 -10.76 -42.32 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -7.55 Total: 2.48 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: -1.65 Total: -16.14 kcal Atomic # 7 Polarization: -60.49 SS G_CDS: -0.06 Total: -60.55 kcal Atomic # 8 Polarization: -43.06 SS G_CDS: -1.69 Total: -44.75 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 55.18 SS G_CDS: -0.64 Total: 54.54 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.57 -10.76 -42.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554706350.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.181 kcal (2) G-P(sol) polarization free energy of solvation -31.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds