Wall clock time and date at job start Sat Apr 11 2020 06:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.46900 * 2 1 4 4 C 1.46509 * 119.99960 * 277.10176 * 3 2 1 5 5 C 1.50694 * 109.46965 * 274.99971 * 4 3 2 6 6 C 1.38233 * 120.00609 * 269.72680 * 5 4 3 7 7 C 1.38230 * 120.00288 * 179.74794 * 6 5 4 8 8 C 1.38232 * 120.00239 * 0.54842 * 7 6 5 9 9 C 1.50701 * 120.00491 * 179.72580 * 8 7 6 10 10 C 1.38243 * 119.99672 * 359.70630 * 8 7 6 11 11 C 1.38233 * 119.99737 * 0.02562 * 10 8 7 12 12 S 1.65596 * 120.00124 * 97.10611 * 3 2 1 13 13 O 1.42100 * 106.40650 * 149.30772 * 12 3 2 14 14 O 1.42109 * 106.40213 * 16.38873 * 12 3 2 15 15 N 1.65601 * 107.22004 * 262.85111 * 12 3 2 16 16 C 1.46505 * 119.99782 * 267.48106 * 15 12 3 17 17 C 1.46495 * 120.00329 * 87.47040 * 15 12 3 18 18 H 1.09010 * 109.46867 * 354.95796 * 17 15 12 19 19 C 1.52993 * 109.47798 * 234.95626 * 17 15 12 20 20 C 1.50701 * 109.46914 * 114.95293 * 17 15 12 21 21 H 1.07994 * 120.00135 * 0.02562 * 20 17 15 22 22 C 1.37881 * 119.99894 * 180.02562 * 20 17 15 23 23 N 1.31509 * 119.99923 * 0.02562 * 22 20 17 24 24 Si 1.86804 * 119.99691 * 180.02562 * 22 20 17 25 25 H 1.48497 * 109.47086 * 269.99626 * 24 22 20 26 26 H 1.48501 * 109.47049 * 30.00295 * 24 22 20 27 27 H 1.48505 * 109.46677 * 150.00023 * 24 22 20 28 28 H 1.08999 * 109.47172 * 57.33487 * 1 2 3 29 29 H 1.08999 * 109.46613 * 177.34281 * 1 2 3 30 30 H 1.09008 * 109.46867 * 297.33703 * 1 2 3 31 31 H 1.09000 * 109.47194 * 239.99875 * 2 1 3 32 32 H 1.09001 * 109.47311 * 119.99890 * 2 1 3 33 33 H 1.08989 * 109.46895 * 35.00134 * 4 3 2 34 34 H 1.08998 * 109.46756 * 155.00327 * 4 3 2 35 35 H 1.08010 * 119.99474 * 359.97438 * 6 5 4 36 36 H 1.08003 * 119.99942 * 180.27713 * 7 6 5 37 37 H 1.08999 * 109.46852 * 269.97821 * 9 8 7 38 38 H 1.08998 * 109.47043 * 29.97863 * 9 8 7 39 39 H 1.08993 * 109.47177 * 149.98118 * 9 8 7 40 40 H 1.08000 * 119.99567 * 180.02562 * 10 8 7 41 41 H 1.08003 * 119.99647 * 179.97438 * 11 10 8 42 42 H 1.09004 * 109.46622 * 269.99482 * 16 15 12 43 43 H 1.08999 * 109.47209 * 29.99338 * 16 15 12 44 44 H 1.08994 * 109.47112 * 149.99764 * 16 15 12 45 45 H 1.08997 * 109.47560 * 172.38075 * 19 17 15 46 46 H 1.09003 * 109.46636 * 292.38091 * 19 17 15 47 47 H 1.09005 * 109.47270 * 52.37498 * 19 17 15 48 48 H 0.97003 * 119.99806 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1146 2.1242 -1.2591 5 6 3.4288 1.8122 -1.9271 6 6 4.5417 2.5872 -1.6592 7 6 5.7484 2.2978 -2.2680 8 6 5.8398 1.2403 -3.1536 9 6 7.1539 0.9286 -3.8221 10 6 4.7256 0.4685 -3.4257 11 6 3.5202 0.7545 -2.8125 12 16 2.4616 2.1028 1.4231 13 8 3.4899 3.0288 1.1003 14 8 2.6276 1.0556 2.3693 15 7 1.1697 3.0003 1.9409 16 6 1.0647 4.4140 1.5711 17 6 0.1319 2.3806 2.7684 18 1 0.3321 1.3133 2.8635 19 6 -1.2346 2.5865 2.1120 20 6 0.1334 3.0157 4.1351 21 1 0.8369 3.8024 4.3641 22 6 -0.7632 2.5922 5.0931 23 7 -1.6195 1.6337 4.8144 24 14 -0.7617 3.3799 6.7869 25 1 0.1625 2.6345 7.6787 26 1 -0.3122 4.7910 6.6762 27 1 -2.1343 3.3406 7.3523 28 1 -0.3633 0.5547 -0.8651 29 1 -0.3632 -1.0266 -0.0476 30 1 -0.3633 0.4720 0.9130 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.2950 1.8334 -1.9160 34 1 2.0553 3.1933 -1.0554 35 1 4.4691 3.4167 -0.9712 36 1 6.6189 2.9006 -2.0552 37 1 7.2251 1.4813 -4.7589 38 1 7.9737 1.2195 -3.1653 39 1 7.2134 -0.1405 -4.0257 40 1 4.7971 -0.3580 -4.1173 41 1 2.6497 0.1518 -3.0254 42 1 1.5590 5.0248 2.3266 43 1 1.5434 4.5734 0.6049 44 1 0.0138 4.6956 1.5068 45 1 -1.9876 2.0131 2.6525 46 1 -1.4949 3.6447 2.1392 47 1 -1.1949 2.2487 1.0763 48 1 -2.2505 1.3361 5.4883 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000554706350.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:10 Heat of formation + Delta-G solvation = -73.212190 kcal Electronic energy + Delta-G solvation = -29280.582689 eV Core-core repulsion = 25461.365488 eV Total energy + Delta-G solvation = -3819.217201 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.40169 -38.38443 -37.93636 -37.67160 -36.83880 -34.52188 -34.03437 -31.77998 -31.45044 -30.79809 -28.64576 -27.35382 -26.94770 -25.53987 -23.85249 -23.30053 -22.32491 -21.67631 -19.78516 -18.89363 -18.60955 -18.11247 -17.47111 -16.96190 -16.62995 -16.19459 -16.01569 -15.89861 -15.25742 -14.95969 -14.95659 -14.54047 -14.50711 -14.28113 -14.20185 -13.77857 -13.68465 -13.52800 -13.34500 -13.31047 -13.11208 -13.03047 -12.99058 -12.87027 -12.74767 -12.61450 -12.54361 -12.37654 -12.15878 -12.10809 -12.09247 -11.88628 -11.70345 -11.64784 -11.15819 -10.51269 -10.10047 -9.76326 -9.66248 -9.40837 -8.12430 -6.24854 -0.37120 0.43730 0.56226 1.39804 1.42205 1.50845 2.05312 2.41626 2.57215 2.93169 3.15867 3.40803 3.72028 3.89498 4.02239 4.11874 4.13956 4.20462 4.27026 4.41347 4.49263 4.58218 4.64357 4.67940 4.75385 4.78888 4.83849 4.85512 4.94226 4.94454 4.99830 5.00923 5.04927 5.14895 5.18247 5.23724 5.30204 5.32949 5.44417 5.56386 5.58817 5.63071 5.74991 5.77495 5.84292 5.91459 6.16399 6.18982 6.30508 6.81910 7.43598 8.91709 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023000 B = 0.003327 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.098015 B = 8413.407099 C = 8889.548517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.112 3.888 3 N -0.994 5.994 4 C 0.164 3.836 5 C -0.128 4.128 6 C -0.116 4.116 7 C -0.142 4.142 8 C -0.094 4.094 9 C -0.112 4.112 10 C -0.133 4.133 11 C -0.101 4.101 12 S 2.784 3.216 13 O -1.000 7.000 14 O -1.019 7.019 15 N -0.998 5.998 16 C 0.103 3.897 17 C 0.281 3.719 18 H 0.022 0.978 19 C -0.129 4.129 20 C -0.543 4.543 21 H 0.049 0.951 22 C 0.021 3.979 23 N -0.910 5.910 24 Si 0.950 3.050 25 H -0.283 1.283 26 H -0.269 1.269 27 H -0.276 1.276 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.039 0.961 31 H 0.107 0.893 32 H 0.064 0.936 33 H 0.117 0.883 34 H 0.084 0.916 35 H 0.120 0.880 36 H 0.127 0.873 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.145 0.855 41 H 0.145 0.855 42 H 0.037 0.963 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.062 0.938 46 H 0.037 0.963 47 H 0.046 0.954 48 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.691 -1.512 -20.565 22.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.013 4.013 3 N -0.834 5.834 4 C 0.040 3.960 5 C -0.130 4.130 6 C -0.135 4.135 7 C -0.160 4.160 8 C -0.094 4.094 9 C -0.169 4.169 10 C -0.151 4.151 11 C -0.120 4.120 12 S 2.795 3.205 13 O -0.983 6.983 14 O -1.003 7.003 15 N -0.840 5.840 16 C -0.043 4.043 17 C 0.177 3.823 18 H 0.040 0.960 19 C -0.189 4.189 20 C -0.583 4.583 21 H 0.068 0.932 22 C -0.180 4.180 23 N -0.549 5.549 24 Si 0.775 3.225 25 H -0.209 1.209 26 H -0.193 1.193 27 H -0.201 1.201 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.058 0.942 31 H 0.126 0.874 32 H 0.083 0.917 33 H 0.135 0.865 34 H 0.103 0.897 35 H 0.138 0.862 36 H 0.145 0.855 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.163 0.837 41 H 0.163 0.837 42 H 0.056 0.944 43 H 0.098 0.902 44 H 0.098 0.902 45 H 0.080 0.920 46 H 0.056 0.944 47 H 0.065 0.935 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.373 -1.690 -20.036 21.781 hybrid contribution -0.376 0.495 1.483 1.608 sum 7.997 -1.195 -18.553 20.238 Atomic orbital electron populations 1.22318 0.95130 1.03359 1.02612 1.21428 0.95082 0.80900 1.03920 1.57939 1.81309 1.22935 1.21177 1.20319 0.95240 0.95866 0.84612 1.20363 0.96169 0.97501 0.98920 1.21460 0.93346 1.00174 0.98531 1.21261 0.97817 0.98726 0.98239 1.20322 0.97187 0.95089 0.96804 1.20831 0.92588 1.02899 1.00534 1.21339 0.92278 1.00508 1.00939 1.21317 0.98873 0.96102 0.95663 1.01643 0.73470 0.72457 0.72973 1.93486 1.55445 1.64445 1.84941 1.93518 1.86263 1.58632 1.61907 1.57685 1.41896 1.20052 1.64334 1.21358 1.03437 0.80275 0.99210 1.18302 0.84469 0.91780 0.87776 0.96014 1.21902 0.98732 1.00373 0.97865 1.21697 1.17817 1.20585 0.98191 0.93227 1.25578 0.95072 0.95521 1.01788 1.69970 1.20838 1.28845 1.35296 0.85690 0.77466 0.79049 0.80252 1.20926 1.19319 1.20077 0.90313 0.90084 0.94194 0.87441 0.91739 0.86479 0.89749 0.86238 0.85524 0.90038 0.91424 0.90397 0.83723 0.83695 0.94382 0.90195 0.90193 0.91953 0.94356 0.93487 0.92626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.47 10.15 71.98 0.73 -3.74 16 2 C 0.11 3.01 6.39 86.38 0.55 3.56 16 3 N -0.99 -29.63 2.83 -519.84 -1.47 -31.10 16 4 C 0.16 3.80 5.47 85.63 0.47 4.27 16 5 C -0.13 -3.08 5.46 -19.87 -0.11 -3.19 16 6 C -0.12 -3.18 9.11 22.27 0.20 -2.98 16 7 C -0.14 -3.40 9.70 22.27 0.22 -3.19 16 8 C -0.09 -1.86 5.88 -19.86 -0.12 -1.98 16 9 C -0.11 -1.51 10.01 71.24 0.71 -0.80 16 10 C -0.13 -2.42 9.70 22.27 0.22 -2.21 16 11 C -0.10 -1.97 9.36 22.27 0.21 -1.76 16 12 S 2.78 112.62 5.96 -56.49 -0.34 112.28 16 13 O -1.00 -40.81 14.31 -128.00 -1.83 -42.65 16 14 O -1.02 -50.69 15.26 -128.00 -1.95 -52.65 16 15 N -1.00 -41.52 3.12 -520.45 -1.62 -43.14 16 16 C 0.10 3.55 9.77 127.77 1.25 4.80 16 17 C 0.28 13.79 2.12 44.24 0.09 13.88 16 18 H 0.02 1.22 6.63 -2.38 -0.02 1.21 16 19 C -0.13 -5.66 7.92 71.98 0.57 -5.09 16 20 C -0.54 -30.09 8.44 25.60 0.22 -29.87 16 21 H 0.05 2.78 7.79 -2.91 -0.02 2.76 16 22 C 0.02 1.13 5.30 84.66 0.45 1.58 16 23 N -0.91 -51.18 11.41 21.45 0.24 -50.94 16 24 Si 0.95 44.01 29.54 68.60 2.03 46.04 16 25 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 26 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 27 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 28 H 0.08 1.62 7.93 -2.39 -0.02 1.60 16 29 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.04 1.32 5.18 -2.38 -0.01 1.31 16 31 H 0.11 2.13 7.64 -2.39 -0.02 2.11 16 32 H 0.06 2.10 6.82 -2.39 -0.02 2.09 16 33 H 0.12 1.95 7.84 -2.39 -0.02 1.93 16 34 H 0.08 1.93 7.06 -2.39 -0.02 1.91 16 35 H 0.12 3.66 6.61 -2.91 -0.02 3.64 16 36 H 0.13 2.67 8.06 -2.91 -0.02 2.65 16 37 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.07 0.89 8.09 -2.39 -0.02 0.87 16 39 H 0.08 0.85 8.08 -2.39 -0.02 0.83 16 40 H 0.15 1.83 8.06 -2.91 -0.02 1.80 16 41 H 0.15 2.03 7.92 -2.91 -0.02 2.01 16 42 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 43 H 0.08 2.21 7.04 -2.39 -0.02 2.20 16 44 H 0.08 2.61 6.35 -2.39 -0.02 2.59 16 45 H 0.06 3.06 6.32 -2.39 -0.02 3.05 16 46 H 0.04 1.61 6.89 -2.39 -0.02 1.59 16 47 H 0.05 1.72 6.84 -2.38 -0.02 1.70 16 48 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 Total: -1.00 -70.81 388.44 1.66 -69.15 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: 0.94 Total: 19.72 kcal Atomic # 6 Polarization: -32.38 SS G_CDS: 5.66 Total: -26.72 kcal Atomic # 7 Polarization: -122.33 SS G_CDS: -2.85 Total: -125.18 kcal Atomic # 8 Polarization: -91.51 SS G_CDS: -3.79 Total: -95.29 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Atomic # 16 Polarization: 112.62 SS G_CDS: -0.34 Total: 112.28 kcal Total: -70.81 1.66 -69.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554706350.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.063 kcal (2) G-P(sol) polarization free energy of solvation -70.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds