Wall clock time and date at job start Sat Apr 11 2020 06:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37804 * 118.95523 * 2 1 4 4 C 1.47467 * 118.97125 * 0.02562 * 3 2 1 5 5 O 1.21602 * 119.99771 * 274.13804 * 4 3 2 6 6 N 1.34775 * 120.00165 * 94.14180 * 4 3 2 7 7 C 1.46924 * 120.62965 * 4.86873 * 6 4 3 8 8 C 1.53626 * 108.54410 * 126.37110 * 7 6 4 9 9 C 1.53042 * 109.23690 * 54.85670 * 8 7 6 10 10 C 1.50705 * 109.44735 * 178.49836 * 9 8 7 11 11 H 1.08006 * 120.00084 * 120.05841 * 10 9 8 12 12 C 1.37876 * 119.99925 * 300.06488 * 10 9 8 13 13 N 1.31520 * 119.99845 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00088 * 359.97438 * 12 10 9 15 15 H 1.48509 * 109.46881 * 90.00300 * 14 12 10 16 16 H 1.48495 * 109.47379 * 210.00200 * 14 12 10 17 17 H 1.48496 * 109.47193 * 330.00590 * 14 12 10 18 18 C 1.53043 * 109.53860 * 298.50833 * 9 8 7 19 19 C 1.46923 * 120.63141 * 185.15242 * 6 4 3 20 20 C 1.35618 * 122.05699 * 179.97438 * 3 2 1 21 21 C 1.46291 * 119.40074 * 0.02803 * 20 3 2 22 22 C 1.39608 * 121.78960 * 180.02562 * 21 20 3 23 23 C 1.37782 * 119.54290 * 179.97438 * 22 21 20 24 24 C 1.38826 * 120.70552 * 359.97438 * 23 22 21 25 25 C 1.37895 * 120.72689 * 0.02562 * 24 23 22 26 26 C 1.39291 * 119.59795 * 359.96020 * 25 24 23 27 27 C 1.34738 * 118.94765 * 179.73135 * 2 1 3 28 28 O 1.21742 * 120.28676 * 359.97438 * 27 2 1 29 29 H 1.09003 * 109.47101 * 84.71638 * 1 2 3 30 30 H 1.09001 * 109.46843 * 324.72190 * 1 2 3 31 31 H 1.08994 * 109.47670 * 204.71916 * 1 2 3 32 32 H 1.08999 * 109.59091 * 246.20487 * 7 6 4 33 33 H 1.09003 * 109.58859 * 6.63321 * 7 6 4 34 34 H 1.08996 * 109.63283 * 294.86958 * 8 7 6 35 35 H 1.09000 * 109.43496 * 174.72212 * 8 7 6 36 36 H 1.08991 * 109.46249 * 58.53401 * 9 8 7 37 37 H 0.96998 * 119.99723 * 180.02562 * 13 12 10 38 38 H 1.08996 * 109.49817 * 301.41764 * 18 9 8 39 39 H 1.09006 * 109.52066 * 181.33553 * 18 9 8 40 40 H 1.08998 * 109.58685 * 353.37282 * 19 6 4 41 41 H 1.09000 * 109.58683 * 113.64978 * 19 6 4 42 42 H 1.07997 * 120.29944 * 180.02562 * 20 3 2 43 43 H 1.08003 * 120.22836 * 359.95166 * 22 21 20 44 44 H 1.08005 * 119.64726 * 179.97438 * 23 22 21 45 45 H 1.07996 * 119.64240 * 180.02562 * 24 23 22 46 46 H 1.07994 * 120.19965 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1322 1.2058 0.0000 4 6 1.3491 2.4554 0.0006 5 8 0.9615 2.9304 -1.0496 6 7 1.0632 3.0709 1.1649 7 6 1.6131 2.5693 2.4317 8 6 2.3303 3.7256 3.1449 9 6 1.3613 4.8997 3.3019 10 6 2.0489 6.0233 4.0340 11 1 2.1595 6.9880 3.5612 12 6 2.5368 5.8196 5.3074 13 7 3.1364 6.8003 5.9465 14 14 2.3450 4.1513 6.1254 15 1 3.5233 3.3053 5.8066 16 1 2.2471 4.3295 7.5964 17 1 1.1125 3.4926 5.6234 18 6 0.9192 5.3868 1.9201 19 6 0.1906 4.2527 1.1924 20 6 3.4864 1.2792 0.0005 21 6 4.2725 0.0454 0.0005 22 6 5.6684 0.0628 0.0015 23 6 6.3627 -1.1274 0.0020 24 6 5.6888 -2.3411 0.0019 25 6 4.3104 -2.3817 0.0009 26 6 3.5871 -1.1914 0.0007 27 6 2.1172 -1.1790 0.0055 28 8 1.4944 -2.2251 0.0109 29 1 -0.3633 0.0946 -1.0233 30 1 -0.3633 0.8390 0.5935 31 1 -0.3634 -0.9334 0.4297 32 1 0.8038 2.1953 3.0588 33 1 2.3224 1.7666 2.2297 34 1 3.1916 4.0410 2.5562 35 1 2.6629 3.3943 4.1287 36 1 0.4886 4.5769 3.8695 37 1 3.4800 6.6569 6.8421 38 1 1.7939 5.6866 1.3430 39 1 0.2476 6.2381 2.0316 40 1 -0.0391 4.5611 0.1725 41 1 -0.7335 4.0124 1.7182 42 1 3.9800 2.2397 0.0009 43 1 6.2005 1.0026 0.0016 44 1 7.4426 -1.1159 0.0023 45 1 6.2502 -3.2637 0.0027 46 1 3.7950 -3.3307 0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000556966922.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:15 Heat of formation + Delta-G solvation = -36.426153 kcal Electronic energy + Delta-G solvation = -30058.870114 eV Core-core repulsion = 26105.804124 eV Total energy + Delta-G solvation = -3953.065990 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.63515 -41.15858 -39.44527 -38.81194 -37.75284 -35.39803 -34.17733 -33.49027 -32.37785 -32.21435 -30.75696 -28.64597 -28.22427 -25.97646 -24.55610 -24.28851 -24.19288 -22.86112 -22.03096 -20.53928 -19.54495 -19.14462 -18.77631 -18.45613 -17.88232 -17.07023 -16.91758 -16.61457 -16.46982 -16.15323 -15.75688 -15.46488 -15.21206 -15.03162 -14.86700 -14.61638 -14.52916 -14.35632 -14.11997 -13.98989 -13.81077 -13.75808 -13.52164 -13.44331 -12.85035 -12.75157 -12.47525 -12.31003 -12.23006 -12.10434 -11.89674 -11.62513 -11.50143 -11.21171 -11.02766 -11.00368 -10.65470 -10.59983 -10.08867 -9.79947 -8.90114 -8.26775 -6.31190 -0.49163 -0.20592 0.84321 0.91612 1.32096 1.38882 1.46777 1.52134 1.70127 1.88720 2.34571 2.86978 2.93277 3.08812 3.17322 3.68621 3.75024 3.85883 3.88671 4.07063 4.10131 4.12959 4.22257 4.23637 4.28342 4.30632 4.39055 4.49670 4.54151 4.54842 4.59479 4.67828 4.70916 4.76994 4.92948 4.95775 4.98348 5.05656 5.11353 5.28639 5.32479 5.39415 5.44279 5.51855 5.68617 5.73506 5.83561 5.86721 6.10061 6.33560 6.61714 6.71879 6.76769 7.34449 8.90223 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012064 B = 0.003790 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.425761 B = 7386.420034 C = 8475.511251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.511 5.511 3 C 0.095 3.905 4 C 0.567 3.433 5 O -0.552 6.552 6 N -0.585 5.585 7 C 0.106 3.894 8 C -0.130 4.130 9 C 0.014 3.986 10 C -0.517 4.517 11 H 0.030 0.970 12 C 0.011 3.989 13 N -0.953 5.953 14 Si 0.944 3.056 15 H -0.262 1.262 16 H -0.305 1.305 17 H -0.236 1.236 18 C -0.106 4.106 19 C 0.115 3.885 20 C -0.143 4.143 21 C -0.016 4.016 22 C -0.117 4.117 23 C -0.078 4.078 24 C -0.123 4.123 25 C -0.066 4.066 26 C -0.166 4.166 27 C 0.543 3.457 28 O -0.555 6.555 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.062 0.938 35 H 0.051 0.949 36 H 0.034 0.966 37 H 0.264 0.736 38 H 0.047 0.953 39 H 0.071 0.929 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.165 0.835 43 H 0.157 0.843 44 H 0.165 0.835 45 H 0.161 0.839 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.897 -18.733 -11.704 22.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.228 5.228 3 C -0.009 4.009 4 C 0.353 3.647 5 O -0.430 6.430 6 N -0.316 5.316 7 C -0.016 4.016 8 C -0.168 4.168 9 C -0.005 4.005 10 C -0.555 4.555 11 H 0.049 0.951 12 C -0.186 4.186 13 N -0.593 5.593 14 Si 0.770 3.230 15 H -0.188 1.188 16 H -0.234 1.234 17 H -0.160 1.160 18 C -0.145 4.145 19 C -0.006 4.006 20 C -0.167 4.167 21 C -0.017 4.017 22 C -0.135 4.135 23 C -0.096 4.096 24 C -0.141 4.141 25 C -0.085 4.085 26 C -0.170 4.170 27 C 0.339 3.661 28 O -0.436 6.436 29 H 0.096 0.904 30 H 0.104 0.896 31 H 0.119 0.881 32 H 0.104 0.896 33 H 0.110 0.890 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.052 0.948 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.090 0.910 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.183 0.817 43 H 0.174 0.826 44 H 0.183 0.817 45 H 0.179 0.821 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.291 -19.022 -12.102 22.662 hybrid contribution -0.011 0.202 0.810 0.835 sum 2.280 -18.820 -11.293 22.066 Atomic orbital electron populations 1.22212 0.76365 1.05346 1.04204 1.45022 1.09319 1.04185 1.64318 1.19620 0.93136 0.84919 1.03187 1.17957 0.79269 0.83685 0.83824 1.90833 1.53749 1.66823 1.31599 1.48210 1.47701 1.29423 1.06286 1.22058 0.98911 0.96650 0.83950 1.22289 0.99689 0.95790 0.98996 1.19111 0.94730 0.92807 0.93878 1.21364 1.36571 0.97736 0.99835 0.95129 1.25916 0.94313 1.00519 0.97870 1.70065 1.40739 1.34680 1.13830 0.85923 0.80657 0.80245 0.76132 1.18824 1.23365 1.15970 1.21706 0.99733 0.97248 0.95782 1.21848 0.92522 0.83874 1.02374 1.21912 0.89924 0.99410 1.05450 1.19058 0.94787 0.90570 0.97329 1.21540 0.91251 1.00791 0.99930 1.21780 1.02181 0.91291 0.94318 1.21612 0.92970 1.00059 0.99443 1.21229 0.95004 0.96617 0.95602 1.19983 0.91109 0.95629 1.10243 1.18474 0.88746 0.82149 0.76704 1.90813 1.69605 1.30825 1.52393 0.90362 0.89564 0.88106 0.89618 0.89022 0.91959 0.93074 0.94825 0.92704 0.93434 0.91050 0.88990 0.89067 0.81708 0.82565 0.81707 0.82093 0.84599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.34 9.85 127.77 1.26 2.59 16 2 N -0.51 -13.31 3.04 -654.67 -1.99 -15.30 16 3 C 0.09 2.45 4.68 40.03 0.19 2.64 16 4 C 0.57 16.18 5.19 86.68 0.45 16.63 16 5 O -0.55 -18.74 16.52 -4.04 -0.07 -18.81 16 6 N -0.58 -16.20 2.96 -821.91 -2.44 -18.64 16 7 C 0.11 2.92 6.35 86.51 0.55 3.47 16 8 C -0.13 -4.61 4.86 30.82 0.15 -4.46 16 9 C 0.01 0.55 1.65 -11.51 -0.02 0.53 16 10 C -0.52 -27.50 9.14 25.60 0.23 -27.27 16 11 H 0.03 1.84 7.99 -2.91 -0.02 1.81 16 12 C 0.01 0.58 5.45 84.65 0.46 1.04 16 13 N -0.95 -57.68 13.96 21.45 0.30 -57.38 16 14 Si 0.94 41.38 24.38 68.60 1.67 43.06 16 15 H -0.26 -10.79 6.86 99.48 0.68 -10.10 16 16 H -0.31 -13.80 7.11 99.48 0.71 -13.10 16 17 H -0.24 -9.17 6.53 99.48 0.65 -8.52 16 18 C -0.11 -3.69 5.30 30.67 0.16 -3.52 16 19 C 0.11 3.20 6.44 86.36 0.56 3.75 16 20 C -0.14 -3.30 9.02 23.76 0.21 -3.08 16 21 C -0.02 -0.34 5.89 -20.08 -0.12 -0.46 16 22 C -0.12 -1.83 9.86 22.49 0.22 -1.61 16 23 C -0.08 -0.92 10.01 22.30 0.22 -0.70 16 24 C -0.12 -1.62 10.01 22.33 0.22 -1.39 16 25 C -0.07 -1.28 9.65 22.44 0.22 -1.06 16 26 C -0.17 -4.01 5.90 -19.95 -0.12 -4.13 16 27 C 0.54 15.22 7.63 86.54 0.66 15.88 16 28 O -0.56 -17.77 15.94 -4.48 -0.07 -17.84 16 29 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.09 1.78 7.00 -2.39 -0.02 1.77 16 31 H 0.10 2.17 7.19 -2.39 -0.02 2.15 16 32 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.09 2.27 5.90 -2.39 -0.01 2.26 16 34 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.05 1.93 3.24 -2.39 -0.01 1.92 16 36 H 0.03 1.35 7.20 -2.39 -0.02 1.34 16 37 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 38 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 40 H 0.09 2.54 6.99 -2.39 -0.02 2.53 16 41 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.17 3.35 8.06 -2.91 -0.02 3.33 16 43 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 44 H 0.17 0.85 8.06 -2.91 -0.02 0.83 16 45 H 0.16 1.10 8.06 -2.91 -0.02 1.08 16 46 H 0.14 2.58 7.77 -2.91 -0.02 2.56 16 Total: -1.00 -71.64 366.84 3.84 -67.80 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: 0.92 Total: 18.24 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: 5.51 Total: -1.13 kcal Atomic # 7 Polarization: -87.19 SS G_CDS: -4.13 Total: -91.31 kcal Atomic # 8 Polarization: -36.51 SS G_CDS: -0.14 Total: -36.64 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 1.67 Total: 43.06 kcal Total: -71.64 3.84 -67.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000556966922.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.370 kcal (2) G-P(sol) polarization free energy of solvation -71.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds