Wall clock time and date at job start Sat Apr 11 2020 06:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34779 * 120.00200 * 2 1 4 4 O 1.21277 * 119.99788 * 5.24419 * 3 2 1 5 5 C 1.50699 * 120.00028 * 185.23820 * 3 2 1 6 6 H 1.09000 * 108.70687 * 325.59681 * 5 3 2 7 7 C 1.54564 * 108.75510 * 83.85483 * 5 3 2 8 8 S 1.84211 * 101.32805 * 97.86964 * 7 5 3 9 9 C 1.84084 * 93.90694 * 32.26015 * 8 7 5 10 10 N 1.45954 * 108.70004 * 207.56306 * 5 3 2 11 11 C 1.34774 * 122.70801 * 57.84943 * 10 5 3 12 12 O 1.21282 * 120.00056 * 0.09939 * 11 10 5 13 13 C 1.50702 * 119.99886 * 180.09118 * 11 10 5 14 14 C 1.53007 * 109.46853 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47040 * 180.02562 * 14 13 11 16 16 C 1.52995 * 109.47300 * 179.97438 * 15 14 13 17 17 C 1.50696 * 109.47702 * 180.02562 * 16 15 14 18 18 H 1.08008 * 119.99637 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00682 * 180.02562 * 17 16 15 20 20 N 1.31519 * 119.99642 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00288 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47346 * 59.99537 * 21 19 17 23 23 H 1.48497 * 109.47225 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46729 * 299.99568 * 21 19 17 25 25 C 1.46499 * 119.99913 * 179.97438 * 2 1 3 26 26 C 1.53000 * 117.49919 * 8.62383 * 25 2 1 27 27 C 1.52998 * 60.00088 * 252.50736 * 26 25 2 28 28 H 1.08997 * 109.46889 * 95.22181 * 1 2 3 29 29 H 1.09003 * 109.47213 * 215.22445 * 1 2 3 30 30 H 1.09003 * 109.47135 * 335.22142 * 1 2 3 31 31 H 1.09004 * 111.04681 * 339.86118 * 7 5 3 32 32 H 1.08997 * 111.05450 * 215.88553 * 7 5 3 33 33 H 1.08994 * 110.77458 * 84.85056 * 9 8 7 34 34 H 1.09002 * 110.77212 * 208.08372 * 9 8 7 35 35 H 1.08999 * 109.47046 * 299.99826 * 13 11 10 36 36 H 1.08998 * 109.47024 * 60.00600 * 13 11 10 37 37 H 1.09001 * 109.46917 * 300.00118 * 14 13 11 38 38 H 1.08998 * 109.47122 * 60.00285 * 14 13 11 39 39 H 1.09001 * 109.47229 * 299.99764 * 15 14 13 40 40 H 1.09007 * 109.47354 * 59.99968 * 15 14 13 41 41 H 1.09001 * 109.46923 * 300.00118 * 16 15 14 42 42 H 1.09007 * 109.46807 * 59.99800 * 16 15 14 43 43 H 0.97001 * 119.99912 * 180.02562 * 20 19 17 44 44 H 1.09004 * 115.55175 * 154.33079 * 25 2 1 45 45 H 1.08994 * 117.49597 * 0.02562 * 26 25 2 46 46 H 1.08995 * 117.49881 * 145.01736 * 26 25 2 47 47 H 1.08998 * 117.49913 * 252.51118 * 27 26 25 48 48 H 1.09005 * 117.51790 * 107.48197 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5363 2.2153 0.0960 5 6 3.6412 1.1699 -0.1191 6 1 4.0342 0.2929 0.3952 7 6 4.0213 1.0807 -1.6147 8 16 4.3381 2.8509 -2.0137 9 6 4.9658 3.2487 -0.3295 10 7 4.1605 2.3658 0.5368 11 6 3.9237 2.6461 1.8337 12 8 3.2559 1.8888 2.5056 13 6 4.4887 3.9005 2.4488 14 6 4.0755 3.9778 3.9200 15 6 4.6486 5.2516 4.5443 16 6 4.2348 5.3293 6.0153 17 6 4.7988 6.5842 6.6302 18 1 5.3926 7.2592 6.0315 19 6 4.5568 6.8709 7.9569 20 7 3.8333 6.0493 8.6858 21 14 5.2552 8.4268 8.7188 22 1 4.7299 9.6118 7.9942 23 1 4.8538 8.5022 10.1465 24 1 6.7369 8.4036 8.6214 25 6 2.1975 -1.2687 0.0006 26 6 1.3886 -2.5515 -0.2024 27 6 1.9630 -2.2194 1.1763 28 1 -0.3633 -0.0935 -1.0234 29 1 -0.3634 -0.8395 0.5927 30 1 -0.3633 0.9331 0.4307 31 1 3.1941 0.6880 -2.2061 32 1 4.9203 0.4807 -1.7551 33 1 6.0260 3.0103 -0.2458 34 1 4.7863 4.2963 -0.0876 35 1 5.5762 3.8819 2.3778 36 1 4.1045 4.7708 1.9169 37 1 2.9880 3.9961 3.9914 38 1 4.4600 3.1074 4.4516 39 1 5.7361 5.2338 4.4729 40 1 4.2637 6.1219 4.0126 41 1 3.1473 5.3474 6.0863 42 1 4.6193 4.4591 6.5473 43 1 3.6627 6.2511 9.6191 44 1 3.2002 -1.2329 -0.4254 45 1 0.3117 -2.4514 -0.3367 46 1 1.8591 -3.3598 -0.7621 47 1 2.8114 -2.8092 1.5235 48 1 1.2641 -1.9006 1.9496 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588925227.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:23 Heat of formation + Delta-G solvation = -35.407468 kcal Electronic energy + Delta-G solvation = -27713.039835 eV Core-core repulsion = 23895.461970 eV Total energy + Delta-G solvation = -3817.577865 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.05088 -39.48323 -37.76576 -36.36484 -34.90119 -33.64936 -32.76349 -31.99627 -29.58027 -28.16273 -27.26717 -25.87940 -24.10833 -23.00529 -22.77962 -22.06176 -20.29283 -19.89283 -18.91506 -18.32948 -17.68530 -16.89724 -16.33670 -16.17990 -16.10632 -15.74379 -15.18573 -14.89356 -14.82479 -14.44820 -14.40264 -13.93052 -13.72407 -13.46176 -13.30007 -12.96118 -12.70732 -12.62342 -12.50274 -12.45953 -12.13014 -11.89249 -11.66333 -11.59065 -11.51501 -11.11581 -10.95818 -10.92518 -10.52249 -10.51822 -10.39599 -10.27277 -9.88467 -9.59072 -9.21673 -9.04967 -8.97848 -8.82897 -8.28092 -8.25576 -5.93022 -3.95531 1.13604 1.51301 2.10130 2.35224 2.56230 2.72220 3.33880 3.37019 3.41224 3.43587 3.74540 3.86844 4.22991 4.32805 4.39507 4.45857 4.50810 4.62373 4.65471 4.75229 4.80412 4.89066 5.00289 5.12984 5.16473 5.26189 5.26729 5.35442 5.42251 5.45840 5.59835 5.64346 5.72683 5.83285 6.09067 6.14274 6.29858 6.55157 6.85181 6.89805 6.98783 7.05118 7.22561 7.76004 7.86371 7.92309 8.04027 8.08501 8.50027 9.11918 9.67910 11.18333 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014784 B = 0.002338 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.448158 B =11975.281503 C =13249.906404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.588 5.588 3 C 0.520 3.480 4 O -0.506 6.506 5 C 0.116 3.884 6 H 0.107 0.893 7 C -0.068 4.068 8 S -0.250 6.250 9 C 0.155 3.845 10 N -0.609 5.609 11 C 0.533 3.467 12 O -0.515 6.515 13 C -0.133 4.133 14 C -0.103 4.103 15 C -0.109 4.109 16 C 0.020 3.980 17 C -0.520 4.520 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.896 5.896 21 Si 0.892 3.108 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 C 0.063 3.937 26 C -0.181 4.181 27 C -0.187 4.187 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.122 0.878 32 H 0.114 0.886 33 H 0.103 0.897 34 H 0.121 0.879 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.016 0.984 42 H 0.015 0.985 43 H 0.260 0.740 44 H 0.128 0.872 45 H 0.102 0.898 46 H 0.105 0.895 47 H 0.105 0.895 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.084 -18.955 -26.284 32.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.322 5.322 3 C 0.306 3.694 4 O -0.378 6.378 5 C 0.007 3.993 6 H 0.125 0.875 7 C -0.217 4.217 8 S -0.024 6.024 9 C -0.078 4.078 10 N -0.347 5.347 11 C 0.322 3.678 12 O -0.389 6.389 13 C -0.173 4.173 14 C -0.141 4.141 15 C -0.147 4.147 16 C -0.017 4.017 17 C -0.559 4.559 18 H 0.072 0.928 19 C -0.146 4.146 20 N -0.535 5.535 21 Si 0.720 3.280 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 C -0.042 4.042 26 C -0.219 4.219 27 C -0.226 4.226 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.140 0.860 32 H 0.133 0.867 33 H 0.121 0.879 34 H 0.139 0.861 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.070 0.930 44 H 0.146 0.854 45 H 0.120 0.880 46 H 0.124 0.876 47 H 0.123 0.877 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.864 -18.081 -26.656 32.221 hybrid contribution 0.475 0.059 1.411 1.490 sum -0.389 -18.022 -25.245 31.020 Atomic orbital electron populations 1.21658 0.78857 1.03889 1.01570 1.47183 1.06640 1.04501 1.73860 1.20484 0.89436 0.83406 0.76115 1.90736 1.69389 1.30747 1.46969 1.21242 0.92741 0.91264 0.94049 0.87519 1.24446 1.06469 0.96552 0.94236 1.88481 1.85520 1.10591 1.17790 1.24335 0.97310 0.99161 0.87020 1.48553 1.53239 1.22310 1.10588 1.21063 0.79388 0.88226 0.79113 1.90725 1.37883 1.50051 1.60227 1.21830 1.01944 0.94147 0.99362 1.21468 1.01718 1.00091 0.90780 1.21645 0.99147 0.94452 0.99472 1.19086 0.96774 0.96810 0.88997 1.21244 1.32363 1.06919 0.95330 0.92793 1.25042 0.95362 0.96760 0.97410 1.69969 1.39018 1.36731 1.07797 0.86667 0.79419 0.83797 0.78153 1.20274 1.21333 1.20283 1.21767 0.96981 0.81151 1.04308 1.23374 1.00674 0.97540 1.00301 1.23436 1.04275 1.02684 0.92223 0.92518 0.91296 0.89813 0.86007 0.86729 0.87901 0.86113 0.88877 0.88782 0.91713 0.91759 0.93420 0.93400 0.96594 0.96612 0.93002 0.85398 0.88011 0.87634 0.87691 0.88101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.75 9.62 59.85 0.58 1.32 16 2 N -0.59 -5.89 3.21 -173.93 -0.56 -6.45 16 3 C 0.52 6.67 5.37 -10.99 -0.06 6.61 16 4 O -0.51 -8.69 15.64 5.56 0.09 -8.60 16 5 C 0.12 1.16 2.16 -68.56 -0.15 1.01 16 6 H 0.11 0.94 6.54 -51.93 -0.34 0.60 16 7 C -0.07 -0.46 6.68 37.98 0.25 -0.20 16 8 S -0.25 -2.31 23.43 -107.50 -2.52 -4.83 16 9 C 0.16 1.35 7.20 60.45 0.44 1.78 16 10 N -0.61 -7.11 2.71 -168.82 -0.46 -7.57 16 11 C 0.53 8.02 7.09 -10.99 -0.08 7.94 16 12 O -0.52 -9.69 15.21 5.56 0.08 -9.61 16 13 C -0.13 -1.87 4.49 -27.88 -0.13 -1.99 16 14 C -0.10 -1.90 4.50 -26.73 -0.12 -2.02 16 15 C -0.11 -2.30 5.15 -26.74 -0.14 -2.43 16 16 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 17 C -0.52 -15.17 9.11 -34.44 -0.31 -15.49 16 18 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.90 -27.84 13.29 55.43 0.74 -27.11 16 21 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 C 0.06 0.43 5.74 -67.93 -0.39 0.04 16 26 C -0.18 -0.88 9.73 -26.73 -0.26 -1.14 16 27 C -0.19 -1.25 10.12 -26.73 -0.27 -1.53 16 28 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.50 6.57 -51.93 -0.34 0.16 16 30 H 0.08 0.97 7.21 -51.93 -0.37 0.60 16 31 H 0.12 0.73 7.78 -51.93 -0.40 0.33 16 32 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.12 1.00 7.12 -51.93 -0.37 0.63 16 35 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.09 1.21 7.63 -51.93 -0.40 0.81 16 37 H 0.06 1.31 8.10 -51.93 -0.42 0.89 16 38 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 44 H 0.13 0.59 6.28 -51.93 -0.33 0.26 16 45 H 0.10 0.49 6.58 -51.93 -0.34 0.15 16 46 H 0.11 0.34 8.14 -51.93 -0.42 -0.09 16 47 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.10 0.84 8.06 -51.93 -0.42 0.43 16 LS Contribution 399.19 15.07 6.02 6.02 Total: -1.00 -37.96 399.19 -10.43 -48.38 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -7.92 Total: -3.23 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -0.87 Total: -4.14 kcal Atomic # 7 Polarization: -40.84 SS G_CDS: -0.28 Total: -41.12 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: 0.17 Total: -18.21 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Atomic # 16 Polarization: -2.31 SS G_CDS: -2.52 Total: -4.83 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -37.96 -10.43 -48.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588925227.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.976 kcal (2) G-P(sol) polarization free energy of solvation -37.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds