Wall clock time and date at job start Sat Apr 11 2020 06:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34779 * 120.00200 * 2 1 4 4 O 1.21277 * 119.99788 * 5.24419 * 3 2 1 5 5 C 1.50699 * 120.00028 * 185.23820 * 3 2 1 6 6 H 1.09000 * 108.70687 * 325.59681 * 5 3 2 7 7 C 1.54564 * 108.75510 * 83.85483 * 5 3 2 8 8 S 1.84211 * 101.32805 * 97.86964 * 7 5 3 9 9 C 1.84084 * 93.90694 * 32.26015 * 8 7 5 10 10 N 1.45954 * 108.70004 * 207.56306 * 5 3 2 11 11 C 1.34774 * 122.70801 * 57.84943 * 10 5 3 12 12 O 1.21282 * 120.00056 * 0.09939 * 11 10 5 13 13 C 1.50702 * 119.99886 * 180.09118 * 11 10 5 14 14 C 1.53007 * 109.46853 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47040 * 180.02562 * 14 13 11 16 16 C 1.52995 * 109.47300 * 179.97438 * 15 14 13 17 17 C 1.50696 * 109.47702 * 180.02562 * 16 15 14 18 18 H 1.08008 * 119.99637 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00682 * 180.02562 * 17 16 15 20 20 N 1.31519 * 119.99642 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00288 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47346 * 59.99537 * 21 19 17 23 23 H 1.48497 * 109.47225 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46729 * 299.99568 * 21 19 17 25 25 C 1.46499 * 119.99913 * 179.97438 * 2 1 3 26 26 C 1.53000 * 117.49919 * 8.62383 * 25 2 1 27 27 C 1.52998 * 60.00088 * 252.50736 * 26 25 2 28 28 H 1.08997 * 109.46889 * 95.22181 * 1 2 3 29 29 H 1.09003 * 109.47213 * 215.22445 * 1 2 3 30 30 H 1.09003 * 109.47135 * 335.22142 * 1 2 3 31 31 H 1.09004 * 111.04681 * 339.86118 * 7 5 3 32 32 H 1.08997 * 111.05450 * 215.88553 * 7 5 3 33 33 H 1.08994 * 110.77458 * 84.85056 * 9 8 7 34 34 H 1.09002 * 110.77212 * 208.08372 * 9 8 7 35 35 H 1.08999 * 109.47046 * 299.99826 * 13 11 10 36 36 H 1.08998 * 109.47024 * 60.00600 * 13 11 10 37 37 H 1.09001 * 109.46917 * 300.00118 * 14 13 11 38 38 H 1.08998 * 109.47122 * 60.00285 * 14 13 11 39 39 H 1.09001 * 109.47229 * 299.99764 * 15 14 13 40 40 H 1.09007 * 109.47354 * 59.99968 * 15 14 13 41 41 H 1.09001 * 109.46923 * 300.00118 * 16 15 14 42 42 H 1.09007 * 109.46807 * 59.99800 * 16 15 14 43 43 H 0.97001 * 119.99912 * 180.02562 * 20 19 17 44 44 H 1.09004 * 115.55175 * 154.33079 * 25 2 1 45 45 H 1.08994 * 117.49597 * 0.02562 * 26 25 2 46 46 H 1.08995 * 117.49881 * 145.01736 * 26 25 2 47 47 H 1.08998 * 117.49913 * 252.51118 * 27 26 25 48 48 H 1.09005 * 117.51790 * 107.48197 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5363 2.2153 0.0960 5 6 3.6412 1.1699 -0.1191 6 1 4.0342 0.2929 0.3952 7 6 4.0213 1.0807 -1.6147 8 16 4.3381 2.8509 -2.0137 9 6 4.9658 3.2487 -0.3295 10 7 4.1605 2.3658 0.5368 11 6 3.9237 2.6461 1.8337 12 8 3.2559 1.8888 2.5056 13 6 4.4887 3.9005 2.4488 14 6 4.0755 3.9778 3.9200 15 6 4.6486 5.2516 4.5443 16 6 4.2348 5.3293 6.0153 17 6 4.7988 6.5842 6.6302 18 1 5.3926 7.2592 6.0315 19 6 4.5568 6.8709 7.9569 20 7 3.8333 6.0493 8.6858 21 14 5.2552 8.4268 8.7188 22 1 4.7299 9.6118 7.9942 23 1 4.8538 8.5022 10.1465 24 1 6.7369 8.4036 8.6214 25 6 2.1975 -1.2687 0.0006 26 6 1.3886 -2.5515 -0.2024 27 6 1.9630 -2.2194 1.1763 28 1 -0.3633 -0.0935 -1.0234 29 1 -0.3634 -0.8395 0.5927 30 1 -0.3633 0.9331 0.4307 31 1 3.1941 0.6880 -2.2061 32 1 4.9203 0.4807 -1.7551 33 1 6.0260 3.0103 -0.2458 34 1 4.7863 4.2963 -0.0876 35 1 5.5762 3.8819 2.3778 36 1 4.1045 4.7708 1.9169 37 1 2.9880 3.9961 3.9914 38 1 4.4600 3.1074 4.4516 39 1 5.7361 5.2338 4.4729 40 1 4.2637 6.1219 4.0126 41 1 3.1473 5.3474 6.0863 42 1 4.6193 4.4591 6.5473 43 1 3.6627 6.2511 9.6191 44 1 3.2002 -1.2329 -0.4254 45 1 0.3117 -2.4514 -0.3367 46 1 1.8591 -3.3598 -0.7621 47 1 2.8114 -2.8092 1.5235 48 1 1.2641 -1.9006 1.9496 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588925227.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:22 Heat of formation + Delta-G solvation = -60.213280 kcal Electronic energy + Delta-G solvation = -27714.115496 eV Core-core repulsion = 23895.461970 eV Total energy + Delta-G solvation = -3818.653526 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.96203 -40.45917 -38.52500 -37.35346 -36.63258 -34.68030 -34.39487 -33.02016 -31.25236 -28.91989 -28.02080 -27.60092 -25.21980 -24.09086 -23.35357 -23.12574 -21.86651 -21.06589 -19.76358 -19.10501 -18.60322 -18.35719 -17.86862 -17.19075 -16.99952 -16.70290 -16.52591 -16.04447 -15.90817 -15.56666 -15.32685 -14.86892 -14.61551 -14.54530 -14.30058 -14.14230 -13.79426 -13.71830 -13.60408 -13.36870 -13.34560 -13.19356 -13.07459 -12.80087 -12.38394 -12.37297 -12.19978 -12.18224 -12.10477 -11.70276 -11.65515 -11.41105 -11.35659 -11.19756 -11.13522 -10.84122 -10.55214 -9.96483 -9.57414 -8.92124 -8.19245 -6.31649 0.50608 0.88973 1.19720 1.39675 1.44078 1.48986 1.51813 1.58620 1.89372 2.41502 2.84781 3.04726 3.13337 3.16723 3.49326 3.72951 3.85061 3.91897 3.95039 3.99005 3.99958 4.12338 4.13166 4.25164 4.29832 4.36705 4.46761 4.55452 4.63021 4.71284 4.74636 4.76151 4.79034 4.82030 4.99167 5.05039 5.14013 5.19309 5.30038 5.32811 5.35790 5.54436 5.75932 5.86471 5.93692 6.20488 6.24178 6.86399 6.91342 7.02279 7.37941 8.92989 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014784 B = 0.002338 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.448158 B =11975.281503 C =13249.906404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.588 5.588 3 C 0.508 3.492 4 O -0.565 6.565 5 C 0.113 3.887 6 H 0.123 0.877 7 C -0.048 4.048 8 S -0.288 6.288 9 C 0.154 3.846 10 N -0.605 5.605 11 C 0.529 3.471 12 O -0.566 6.566 13 C -0.124 4.124 14 C -0.093 4.093 15 C -0.094 4.094 16 C 0.020 3.980 17 C -0.542 4.542 18 H 0.067 0.933 19 C -0.007 4.007 20 N -0.939 5.939 21 Si 0.970 3.030 22 H -0.266 1.266 23 H -0.285 1.285 24 H -0.262 1.262 25 C 0.046 3.954 26 C -0.156 4.156 27 C -0.203 4.203 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.049 0.951 31 H 0.130 0.870 32 H 0.157 0.843 33 H 0.140 0.860 34 H 0.124 0.876 35 H 0.131 0.869 36 H 0.110 0.890 37 H 0.033 0.967 38 H 0.049 0.951 39 H 0.068 0.932 40 H 0.057 0.943 41 H -0.020 1.020 42 H -0.013 1.013 43 H 0.263 0.737 44 H 0.155 0.845 45 H 0.102 0.898 46 H 0.133 0.867 47 H 0.118 0.882 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.697 -19.452 -28.637 34.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.320 5.320 3 C 0.296 3.704 4 O -0.442 6.442 5 C 0.004 3.996 6 H 0.140 0.860 7 C -0.197 4.197 8 S -0.063 6.063 9 C -0.078 4.078 10 N -0.341 5.341 11 C 0.319 3.681 12 O -0.444 6.444 13 C -0.163 4.163 14 C -0.131 4.131 15 C -0.132 4.132 16 C -0.018 4.018 17 C -0.580 4.580 18 H 0.085 0.915 19 C -0.205 4.205 20 N -0.579 5.579 21 Si 0.794 3.206 22 H -0.191 1.191 23 H -0.211 1.211 24 H -0.187 1.187 25 C -0.058 4.058 26 C -0.193 4.193 27 C -0.241 4.241 28 H 0.095 0.905 29 H 0.103 0.897 30 H 0.068 0.932 31 H 0.148 0.852 32 H 0.175 0.825 33 H 0.157 0.843 34 H 0.142 0.858 35 H 0.149 0.851 36 H 0.128 0.872 37 H 0.052 0.948 38 H 0.068 0.932 39 H 0.086 0.914 40 H 0.076 0.924 41 H -0.002 1.002 42 H 0.005 0.995 43 H 0.072 0.928 44 H 0.173 0.827 45 H 0.120 0.880 46 H 0.151 0.849 47 H 0.136 0.864 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.777 -18.617 -29.078 34.573 hybrid contribution -0.425 0.109 2.136 2.181 sum 1.352 -18.508 -26.942 32.714 Atomic orbital electron populations 1.21695 0.78971 1.02742 1.02804 1.47340 1.07013 1.05250 1.72350 1.21103 0.90772 0.83288 0.75277 1.90701 1.70697 1.32831 1.50000 1.21487 0.90713 0.91081 0.96335 0.85974 1.24615 1.08601 0.95023 0.91423 1.88661 1.85931 1.13451 1.18226 1.24665 0.98536 0.98973 0.85655 1.48511 1.52642 1.23126 1.09855 1.21119 0.78855 0.87961 0.80171 1.90705 1.40193 1.51650 1.61870 1.21714 1.04223 0.94570 0.95821 1.21226 0.99524 0.98226 0.94123 1.21436 1.00349 0.95995 0.95386 1.19041 0.94349 0.95349 0.93012 1.21720 1.32558 1.07670 0.96043 0.91481 1.26111 0.95565 1.00672 0.98102 1.70133 1.40448 1.39098 1.08235 0.85423 0.79210 0.78959 0.76986 1.19055 1.21064 1.18657 1.22188 0.98406 0.80180 1.05009 1.23471 1.00732 0.96666 0.98444 1.23445 1.04728 1.03444 0.92513 0.90501 0.89684 0.93211 0.85170 0.82529 0.84276 0.85797 0.85094 0.87213 0.94813 0.93169 0.91382 0.92443 1.00160 0.99459 0.92845 0.82742 0.87959 0.84894 0.86412 0.90646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.51 9.62 127.77 1.23 2.74 16 2 N -0.59 -11.64 3.21 -822.59 -2.64 -14.29 16 3 C 0.51 13.14 5.37 87.66 0.47 13.61 16 4 O -0.56 -20.42 15.64 -3.02 -0.05 -20.47 16 5 C 0.11 2.06 2.16 44.88 0.10 2.16 16 6 H 0.12 1.86 6.54 -2.39 -0.02 1.85 16 7 C -0.05 -0.49 6.68 72.51 0.48 -0.01 16 8 S -0.29 -4.73 23.43 -56.49 -1.32 -6.05 16 9 C 0.15 2.26 7.20 127.56 0.92 3.18 16 10 N -0.61 -13.23 2.71 -806.41 -2.19 -15.42 16 11 C 0.53 15.83 7.09 87.66 0.62 16.45 16 12 O -0.57 -22.18 15.21 -3.04 -0.05 -22.23 16 13 C -0.12 -3.33 4.49 29.85 0.13 -3.20 16 14 C -0.09 -3.52 4.50 30.60 0.14 -3.39 16 15 C -0.09 -3.96 5.15 30.59 0.16 -3.80 16 16 C 0.02 1.10 4.97 29.85 0.15 1.25 16 17 C -0.54 -31.93 9.11 25.60 0.23 -31.70 16 18 H 0.07 3.69 7.74 -2.91 -0.02 3.66 16 19 C -0.01 -0.44 5.46 84.65 0.46 0.02 16 20 N -0.94 -59.99 13.29 21.45 0.28 -59.70 16 21 Si 0.97 45.38 29.54 68.60 2.03 47.41 16 22 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 23 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 24 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 25 C 0.05 0.53 5.74 44.99 0.26 0.79 16 26 C -0.16 -1.11 9.73 30.59 0.30 -0.81 16 27 C -0.20 -2.50 10.12 30.59 0.31 -2.19 16 28 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.08 1.26 6.57 -2.39 -0.02 1.25 16 30 H 0.05 1.28 7.21 -2.39 -0.02 1.26 16 31 H 0.13 1.17 7.78 -2.38 -0.02 1.15 16 32 H 0.16 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.14 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.12 1.74 7.12 -2.39 -0.02 1.73 16 35 H 0.13 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.11 2.64 7.63 -2.39 -0.02 2.62 16 37 H 0.03 1.46 8.10 -2.39 -0.02 1.44 16 38 H 0.05 2.02 8.10 -2.39 -0.02 2.00 16 39 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 40 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 41 H -0.02 -1.25 8.14 -2.39 -0.02 -1.27 16 42 H -0.01 -0.79 8.14 -2.38 -0.02 -0.81 16 43 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 44 H 0.16 0.89 6.28 -2.38 -0.01 0.88 16 45 H 0.10 0.75 6.58 -2.39 -0.02 0.73 16 46 H 0.13 0.29 8.14 -2.39 -0.02 0.27 16 47 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 48 H 0.07 1.32 8.06 -2.38 -0.02 1.30 16 Total: -1.00 -89.04 399.19 2.97 -86.08 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: 0.94 Total: 9.58 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: 5.96 Total: -4.90 kcal Atomic # 7 Polarization: -84.87 SS G_CDS: -4.55 Total: -89.41 kcal Atomic # 8 Polarization: -42.61 SS G_CDS: -0.09 Total: -42.70 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Atomic # 16 Polarization: -4.73 SS G_CDS: -1.32 Total: -6.05 kcal Total: -89.04 2.97 -86.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588925227.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.866 kcal (2) G-P(sol) polarization free energy of solvation -89.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds