Wall clock time and date at job start Sat Apr 11 2020 06:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34771 * 120.00478 * 2 1 4 4 O 1.21289 * 119.99925 * 5.82604 * 3 2 1 5 5 C 1.50694 * 120.00455 * 185.82255 * 3 2 1 6 6 H 1.09004 * 108.70039 * 39.64009 * 5 3 2 7 7 C 1.54563 * 108.75618 * 281.38369 * 5 3 2 8 8 S 1.83986 * 101.42452 * 215.85829 * 7 5 3 9 9 C 1.84073 * 93.84827 * 32.39999 * 8 7 5 10 10 N 1.45498 * 108.75734 * 157.89222 * 5 3 2 11 11 C 1.34771 * 122.43246 * 299.87545 * 10 5 3 12 12 O 1.21282 * 119.99989 * 0.02562 * 11 10 5 13 13 C 1.50701 * 120.00576 * 179.97438 * 11 10 5 14 14 C 1.53001 * 109.47505 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47018 * 179.97438 * 14 13 11 16 16 C 1.53001 * 109.47018 * 180.02562 * 15 14 13 17 17 C 1.50694 * 109.47274 * 180.02562 * 16 15 14 18 18 H 1.08005 * 119.99855 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00219 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99725 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99965 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47227 * 89.99751 * 21 19 17 23 23 H 1.48503 * 109.46809 * 209.99578 * 21 19 17 24 24 H 1.48493 * 109.47299 * 329.99533 * 21 19 17 25 25 C 1.46507 * 119.99781 * 180.02562 * 2 1 3 26 26 C 1.52999 * 117.51489 * 356.60698 * 25 2 1 27 27 C 1.52996 * 60.00028 * 107.48148 * 26 25 2 28 28 H 1.08998 * 109.46802 * 269.27767 * 1 2 3 29 29 H 1.08999 * 109.46537 * 29.27132 * 1 2 3 30 30 H 1.08993 * 109.47501 * 149.27226 * 1 2 3 31 31 H 1.08998 * 111.05291 * 333.94619 * 7 5 3 32 32 H 1.09001 * 111.05094 * 97.91713 * 7 5 3 33 33 H 1.09000 * 110.77674 * 208.19912 * 9 8 7 34 34 H 1.09001 * 110.77522 * 84.77765 * 9 8 7 35 35 H 1.09004 * 109.46473 * 299.99943 * 13 11 10 36 36 H 1.09003 * 109.47361 * 59.99636 * 13 11 10 37 37 H 1.09000 * 109.46586 * 299.99914 * 14 13 11 38 38 H 1.08997 * 109.46986 * 59.99884 * 14 13 11 39 39 H 1.08997 * 109.47171 * 299.99918 * 15 14 13 40 40 H 1.08997 * 109.47228 * 60.00166 * 15 14 13 41 41 H 1.09007 * 109.46745 * 300.00447 * 16 15 14 42 42 H 1.09003 * 109.47165 * 59.99580 * 16 15 14 43 43 H 0.97004 * 119.99589 * 179.97438 * 20 19 17 44 44 H 1.08990 * 115.54842 * 210.90901 * 25 2 1 45 45 H 1.09004 * 117.50035 * 214.97093 * 26 25 2 46 46 H 1.09000 * 117.50213 * 359.97438 * 26 25 2 47 47 H 1.08997 * 117.49965 * 252.51088 * 27 26 25 48 48 H 1.09000 * 117.50254 * 107.48539 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5373 2.2148 0.1066 5 6 3.6401 1.1705 -0.1324 6 1 3.9286 0.4106 -0.8587 7 6 4.2606 0.8103 1.2366 8 16 5.7658 1.8682 1.2442 9 6 4.9759 3.2139 0.2679 10 7 4.0635 2.4726 -0.6246 11 6 3.6526 2.9659 -1.8095 12 8 2.9017 2.3187 -2.5083 13 6 4.1251 4.3222 -2.2658 14 6 3.5155 4.6416 -3.6323 15 6 3.9947 6.0189 -4.0952 16 6 3.3846 6.3386 -5.4614 17 6 3.8571 7.6949 -5.9176 18 1 4.5254 8.2714 -5.2951 19 6 3.4355 8.2003 -7.1292 20 7 2.6213 7.4984 -7.8869 21 14 4.0207 9.8818 -7.6943 22 1 5.2753 9.7328 -8.4747 23 1 2.9785 10.5076 -8.5473 24 1 4.2733 10.7417 -6.5103 25 6 2.1975 -1.2688 -0.0006 26 6 1.3778 -2.5582 0.0792 27 6 2.0583 -2.1643 -1.2333 28 1 -0.3633 -0.0130 1.0276 29 1 -0.3632 0.8965 -0.5025 30 1 -0.3634 -0.8833 -0.5250 31 1 3.5897 1.0775 2.0531 32 1 4.5263 -0.2459 1.2803 33 1 5.7211 3.7614 -0.3093 34 1 4.4180 3.8873 0.9185 35 1 3.8135 5.0772 -1.5439 36 1 5.2123 4.3210 -2.3439 37 1 3.8266 3.8866 -4.3543 38 1 2.4283 4.6431 -3.5538 39 1 3.6833 6.7736 -3.3730 40 1 5.0819 6.0179 -4.1736 41 1 3.6957 5.5839 -6.1837 42 1 2.2975 6.3397 -5.3825 43 1 2.3244 7.8541 -8.7391 44 1 3.1632 -1.2543 0.5046 45 1 1.8043 -3.3921 0.6368 46 1 0.2933 -2.4627 0.1325 47 1 1.4216 -1.8096 -2.0437 48 1 2.9326 -2.7389 -1.5392 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588925231.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:26 Heat of formation + Delta-G solvation = -36.270966 kcal Electronic energy + Delta-G solvation = -27663.280748 eV Core-core repulsion = 23845.665438 eV Total energy + Delta-G solvation = -3817.615309 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.10321 -39.51973 -37.81552 -36.41074 -34.89659 -33.71162 -32.77309 -32.03249 -29.58844 -28.11173 -27.32635 -25.90533 -24.24283 -23.01904 -22.78536 -22.01728 -20.37116 -19.91454 -19.00585 -18.26912 -17.67793 -16.90958 -16.33562 -16.17321 -16.10729 -15.85249 -15.31082 -15.04957 -14.95757 -14.42540 -14.35950 -13.84151 -13.81322 -13.53336 -13.11416 -13.07858 -12.77639 -12.61783 -12.48068 -12.45703 -12.11407 -11.87870 -11.66313 -11.58628 -11.52627 -11.32955 -11.09810 -10.96834 -10.52794 -10.49014 -10.39324 -10.19815 -9.87360 -9.58944 -9.21773 -9.08633 -8.96607 -8.90695 -8.36939 -8.28238 -5.93061 -3.95420 1.08745 1.42239 2.05987 2.28546 2.59650 2.71735 3.27255 3.35723 3.41634 3.45074 3.72675 3.86855 4.13331 4.24237 4.34998 4.41963 4.50448 4.59792 4.63840 4.71395 4.86897 4.90988 5.00404 5.09679 5.14956 5.24294 5.27016 5.36523 5.41486 5.42388 5.56195 5.59801 5.73596 5.83643 6.02772 6.14828 6.30392 6.55745 6.85678 6.88409 6.94542 7.05489 7.22944 7.76504 7.78237 7.92572 8.04478 8.08662 8.50243 9.12270 9.68070 11.18337 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015149 B = 0.002295 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.881545 B =12197.027298 C =13429.983658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.587 5.587 3 C 0.519 3.481 4 O -0.513 6.513 5 C 0.120 3.880 6 H 0.110 0.890 7 C -0.069 4.069 8 S -0.251 6.251 9 C 0.156 3.844 10 N -0.608 5.608 11 C 0.534 3.466 12 O -0.516 6.516 13 C -0.133 4.133 14 C -0.103 4.103 15 C -0.109 4.109 16 C 0.020 3.980 17 C -0.519 4.519 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.896 5.896 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 C 0.058 3.942 26 C -0.179 4.179 27 C -0.189 4.189 28 H 0.057 0.943 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.106 0.894 32 H 0.128 0.872 33 H 0.124 0.876 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.016 0.984 42 H 0.016 0.984 43 H 0.260 0.740 44 H 0.128 0.872 45 H 0.106 0.894 46 H 0.103 0.897 47 H 0.101 0.899 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.380 -22.653 23.594 32.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.320 5.320 3 C 0.304 3.696 4 O -0.387 6.387 5 C 0.011 3.989 6 H 0.128 0.872 7 C -0.218 4.218 8 S -0.025 6.025 9 C -0.077 4.077 10 N -0.346 5.346 11 C 0.323 3.677 12 O -0.389 6.389 13 C -0.173 4.173 14 C -0.141 4.141 15 C -0.147 4.147 16 C -0.017 4.017 17 C -0.558 4.558 18 H 0.073 0.927 19 C -0.146 4.146 20 N -0.535 5.535 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 C -0.047 4.047 26 C -0.216 4.216 27 C -0.228 4.228 28 H 0.075 0.925 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.124 0.876 32 H 0.146 0.854 33 H 0.142 0.858 34 H 0.120 0.880 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.069 0.931 44 H 0.146 0.854 45 H 0.125 0.875 46 H 0.121 0.879 47 H 0.120 0.880 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.662 -22.502 23.549 32.680 hybrid contribution -0.844 0.910 -0.775 1.464 sum 1.818 -21.592 22.774 31.435 Atomic orbital electron populations 1.21679 0.78678 1.03539 1.01908 1.47186 1.06700 1.04494 1.73627 1.20633 0.89629 0.83318 0.76028 1.90739 1.69582 1.30812 1.47591 1.21123 0.92000 0.88838 0.96974 0.87208 1.24444 0.96534 1.03434 0.97417 1.88387 1.20025 1.21578 1.72470 1.24329 0.94556 0.94577 0.94277 1.48369 1.48954 1.17168 1.20082 1.21040 0.79505 0.88674 0.78434 1.90718 1.34362 1.60398 1.53458 1.21832 1.02374 0.92136 1.00960 1.21468 1.00837 0.99076 0.92683 1.21644 0.99658 0.93329 1.00082 1.19093 0.96108 0.96252 0.90258 1.21281 1.28343 1.02704 1.03435 0.92737 1.25046 0.95224 0.97503 0.96841 1.69980 1.33815 1.37700 1.12015 0.86607 0.78366 0.84451 0.78642 1.20711 1.21271 1.19914 1.21864 0.97704 0.81567 1.03523 1.23379 1.00157 0.96903 1.01166 1.23478 1.03936 1.02959 0.92412 0.92450 0.90176 0.90986 0.87595 0.85436 0.85781 0.88045 0.88763 0.88884 0.91748 0.91713 0.93401 0.93413 0.96606 0.96585 0.93064 0.85443 0.87522 0.87863 0.88014 0.87611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.74 9.78 59.85 0.59 1.32 16 2 N -0.59 -5.61 3.20 -173.94 -0.56 -6.17 16 3 C 0.52 6.45 5.62 -10.99 -0.06 6.39 16 4 O -0.51 -8.52 15.59 5.54 0.09 -8.43 16 5 C 0.12 1.22 2.12 -68.80 -0.15 1.07 16 6 H 0.11 1.08 7.43 -51.93 -0.39 0.70 16 7 C -0.07 -0.46 6.24 37.98 0.24 -0.23 16 8 S -0.25 -2.05 23.43 -107.50 -2.52 -4.56 16 9 C 0.16 1.37 7.21 60.45 0.44 1.81 16 10 N -0.61 -7.18 2.66 -169.16 -0.45 -7.63 16 11 C 0.53 8.11 7.02 -10.99 -0.08 8.04 16 12 O -0.52 -9.78 15.25 5.55 0.08 -9.69 16 13 C -0.13 -1.88 4.49 -27.88 -0.13 -2.00 16 14 C -0.10 -1.90 4.50 -26.73 -0.12 -2.02 16 15 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 16 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 17 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 16 18 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 19 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -27.86 13.29 55.43 0.74 -27.12 16 21 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 25 C 0.06 0.36 5.41 -67.93 -0.37 -0.01 16 26 C -0.18 -0.79 9.71 -26.73 -0.26 -1.05 16 27 C -0.19 -1.13 10.32 -26.73 -0.28 -1.40 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.91 7.49 -51.93 -0.39 0.52 16 30 H 0.07 0.47 6.24 -51.93 -0.32 0.15 16 31 H 0.11 0.69 7.85 -51.93 -0.41 0.29 16 32 H 0.13 0.47 6.73 -51.93 -0.35 0.12 16 33 H 0.12 0.90 7.13 -51.93 -0.37 0.53 16 34 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.09 1.08 7.63 -51.93 -0.40 0.69 16 37 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 38 H 0.06 1.31 8.10 -51.93 -0.42 0.89 16 39 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.13 0.52 5.38 -51.93 -0.28 0.24 16 45 H 0.11 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.10 0.45 6.29 -51.93 -0.33 0.13 16 47 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 397.24 15.07 5.99 5.99 Total: -1.00 -37.49 397.24 -10.35 -47.84 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -7.84 Total: -3.27 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -0.86 Total: -4.08 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: -0.27 Total: -40.92 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: 0.17 Total: -18.13 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Atomic # 16 Polarization: -2.05 SS G_CDS: -2.52 Total: -4.56 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -37.49 -10.35 -47.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588925231.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.571 kcal (2) G-P(sol) polarization free energy of solvation -37.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds