Wall clock time and date at job start Sat Apr 11 2020 06:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34771 * 120.00478 * 2 1 4 4 O 1.21289 * 119.99925 * 5.82604 * 3 2 1 5 5 C 1.50694 * 120.00455 * 185.82255 * 3 2 1 6 6 H 1.09004 * 108.70039 * 39.64009 * 5 3 2 7 7 C 1.54563 * 108.75618 * 281.38369 * 5 3 2 8 8 S 1.83986 * 101.42452 * 215.85829 * 7 5 3 9 9 C 1.84073 * 93.84827 * 32.39999 * 8 7 5 10 10 N 1.45498 * 108.75734 * 157.89222 * 5 3 2 11 11 C 1.34771 * 122.43246 * 299.87545 * 10 5 3 12 12 O 1.21282 * 119.99989 * 0.02562 * 11 10 5 13 13 C 1.50701 * 120.00576 * 179.97438 * 11 10 5 14 14 C 1.53001 * 109.47505 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47018 * 179.97438 * 14 13 11 16 16 C 1.53001 * 109.47018 * 180.02562 * 15 14 13 17 17 C 1.50694 * 109.47274 * 180.02562 * 16 15 14 18 18 H 1.08005 * 119.99855 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00219 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99725 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99965 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47227 * 89.99751 * 21 19 17 23 23 H 1.48503 * 109.46809 * 209.99578 * 21 19 17 24 24 H 1.48493 * 109.47299 * 329.99533 * 21 19 17 25 25 C 1.46507 * 119.99781 * 180.02562 * 2 1 3 26 26 C 1.52999 * 117.51489 * 356.60698 * 25 2 1 27 27 C 1.52996 * 60.00028 * 107.48148 * 26 25 2 28 28 H 1.08998 * 109.46802 * 269.27767 * 1 2 3 29 29 H 1.08999 * 109.46537 * 29.27132 * 1 2 3 30 30 H 1.08993 * 109.47501 * 149.27226 * 1 2 3 31 31 H 1.08998 * 111.05291 * 333.94619 * 7 5 3 32 32 H 1.09001 * 111.05094 * 97.91713 * 7 5 3 33 33 H 1.09000 * 110.77674 * 208.19912 * 9 8 7 34 34 H 1.09001 * 110.77522 * 84.77765 * 9 8 7 35 35 H 1.09004 * 109.46473 * 299.99943 * 13 11 10 36 36 H 1.09003 * 109.47361 * 59.99636 * 13 11 10 37 37 H 1.09000 * 109.46586 * 299.99914 * 14 13 11 38 38 H 1.08997 * 109.46986 * 59.99884 * 14 13 11 39 39 H 1.08997 * 109.47171 * 299.99918 * 15 14 13 40 40 H 1.08997 * 109.47228 * 60.00166 * 15 14 13 41 41 H 1.09007 * 109.46745 * 300.00447 * 16 15 14 42 42 H 1.09003 * 109.47165 * 59.99580 * 16 15 14 43 43 H 0.97004 * 119.99589 * 179.97438 * 20 19 17 44 44 H 1.08990 * 115.54842 * 210.90901 * 25 2 1 45 45 H 1.09004 * 117.50035 * 214.97093 * 26 25 2 46 46 H 1.09000 * 117.50213 * 359.97438 * 26 25 2 47 47 H 1.08997 * 117.49965 * 252.51088 * 27 26 25 48 48 H 1.09000 * 117.50254 * 107.48539 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5373 2.2148 0.1066 5 6 3.6401 1.1705 -0.1324 6 1 3.9286 0.4106 -0.8587 7 6 4.2606 0.8103 1.2366 8 16 5.7658 1.8682 1.2442 9 6 4.9759 3.2139 0.2679 10 7 4.0635 2.4726 -0.6246 11 6 3.6526 2.9659 -1.8095 12 8 2.9017 2.3187 -2.5083 13 6 4.1251 4.3222 -2.2658 14 6 3.5155 4.6416 -3.6323 15 6 3.9947 6.0189 -4.0952 16 6 3.3846 6.3386 -5.4614 17 6 3.8571 7.6949 -5.9176 18 1 4.5254 8.2714 -5.2951 19 6 3.4355 8.2003 -7.1292 20 7 2.6213 7.4984 -7.8869 21 14 4.0207 9.8818 -7.6943 22 1 5.2753 9.7328 -8.4747 23 1 2.9785 10.5076 -8.5473 24 1 4.2733 10.7417 -6.5103 25 6 2.1975 -1.2688 -0.0006 26 6 1.3778 -2.5582 0.0792 27 6 2.0583 -2.1643 -1.2333 28 1 -0.3633 -0.0130 1.0276 29 1 -0.3632 0.8965 -0.5025 30 1 -0.3634 -0.8833 -0.5250 31 1 3.5897 1.0775 2.0531 32 1 4.5263 -0.2459 1.2803 33 1 5.7211 3.7614 -0.3093 34 1 4.4180 3.8873 0.9185 35 1 3.8135 5.0772 -1.5439 36 1 5.2123 4.3210 -2.3439 37 1 3.8266 3.8866 -4.3543 38 1 2.4283 4.6431 -3.5538 39 1 3.6833 6.7736 -3.3730 40 1 5.0819 6.0179 -4.1736 41 1 3.6957 5.5839 -6.1837 42 1 2.2975 6.3397 -5.3825 43 1 2.3244 7.8541 -8.7391 44 1 3.1632 -1.2543 0.5046 45 1 1.8043 -3.3921 0.6368 46 1 0.2933 -2.4627 0.1325 47 1 1.4216 -1.8096 -2.0437 48 1 2.9326 -2.7389 -1.5392 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588925231.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:26 Heat of formation + Delta-G solvation = -60.465666 kcal Electronic energy + Delta-G solvation = -27664.329909 eV Core-core repulsion = 23845.665438 eV Total energy + Delta-G solvation = -3818.664470 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.00998 -40.49218 -38.54889 -37.40896 -36.63712 -34.68476 -34.42449 -33.06880 -31.27096 -28.87477 -28.07329 -27.62437 -25.32968 -24.14874 -23.32988 -23.05034 -21.87364 -21.14159 -19.87453 -19.03298 -18.59569 -18.35502 -17.88695 -17.14765 -16.99734 -16.72220 -16.50244 -16.30945 -15.91842 -15.63286 -15.36891 -14.93058 -14.61139 -14.59348 -14.45202 -13.91950 -13.84190 -13.72397 -13.59704 -13.42680 -13.31786 -13.14747 -13.01216 -12.82752 -12.35310 -12.32989 -12.21607 -12.18697 -12.13649 -12.03672 -11.58313 -11.41346 -11.38543 -11.22928 -11.03283 -10.81596 -10.55923 -10.02646 -9.62347 -8.97697 -8.19505 -6.31765 0.47218 0.77650 1.16856 1.39648 1.42287 1.43333 1.53345 1.57876 1.90848 2.41345 2.81909 3.02411 3.13209 3.15262 3.48357 3.67698 3.77284 3.87186 3.93693 3.96915 3.97705 4.11435 4.16376 4.23007 4.27503 4.33929 4.44809 4.55661 4.62999 4.69247 4.74459 4.76724 4.80486 4.82239 4.98643 5.05473 5.13703 5.19286 5.29869 5.31646 5.32991 5.54562 5.75863 5.86461 5.92274 6.16566 6.24120 6.86397 6.87967 6.97918 7.37844 8.92964 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015149 B = 0.002295 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.881545 B =12197.027298 C =13429.983658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.585 5.585 3 C 0.510 3.490 4 O -0.569 6.569 5 C 0.118 3.882 6 H 0.113 0.887 7 C -0.057 4.057 8 S -0.247 6.247 9 C 0.146 3.854 10 N -0.605 5.605 11 C 0.530 3.470 12 O -0.568 6.568 13 C -0.124 4.124 14 C -0.093 4.093 15 C -0.094 4.094 16 C 0.019 3.981 17 C -0.541 4.541 18 H 0.067 0.933 19 C -0.008 4.008 20 N -0.939 5.939 21 Si 0.971 3.029 22 H -0.270 1.270 23 H -0.284 1.284 24 H -0.259 1.259 25 C 0.041 3.959 26 C -0.157 4.157 27 C -0.200 4.200 28 H 0.072 0.928 29 H 0.045 0.955 30 H 0.093 0.907 31 H 0.110 0.890 32 H 0.164 0.836 33 H 0.143 0.857 34 H 0.109 0.891 35 H 0.114 0.886 36 H 0.128 0.872 37 H 0.047 0.953 38 H 0.035 0.965 39 H 0.059 0.941 40 H 0.066 0.934 41 H -0.014 1.014 42 H -0.019 1.019 43 H 0.263 0.737 44 H 0.154 0.846 45 H 0.133 0.867 46 H 0.103 0.897 47 H 0.076 0.924 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.820 -23.231 25.932 35.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.317 5.317 3 C 0.296 3.704 4 O -0.447 6.447 5 C 0.009 3.991 6 H 0.131 0.869 7 C -0.206 4.206 8 S -0.020 6.020 9 C -0.086 4.086 10 N -0.341 5.341 11 C 0.320 3.680 12 O -0.445 6.445 13 C -0.163 4.163 14 C -0.131 4.131 15 C -0.132 4.132 16 C -0.018 4.018 17 C -0.579 4.579 18 H 0.085 0.915 19 C -0.205 4.205 20 N -0.579 5.579 21 Si 0.795 3.205 22 H -0.195 1.195 23 H -0.210 1.210 24 H -0.183 1.183 25 C -0.062 4.062 26 C -0.194 4.194 27 C -0.239 4.239 28 H 0.091 0.909 29 H 0.064 0.936 30 H 0.111 0.889 31 H 0.128 0.872 32 H 0.182 0.818 33 H 0.161 0.839 34 H 0.127 0.873 35 H 0.132 0.868 36 H 0.146 0.854 37 H 0.066 0.934 38 H 0.054 0.946 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.004 0.996 42 H 0.000 1.000 43 H 0.071 0.929 44 H 0.171 0.829 45 H 0.151 0.849 46 H 0.121 0.879 47 H 0.095 0.905 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.142 -23.131 25.947 35.139 hybrid contribution -1.659 0.976 -1.494 2.436 sum 3.484 -22.156 24.452 33.180 Atomic orbital electron populations 1.21717 0.78759 1.02825 1.02725 1.47324 1.07050 1.05233 1.72049 1.21099 0.90653 0.83298 0.75347 1.90702 1.70738 1.32782 1.50505 1.21301 0.90726 0.88135 0.98987 0.86885 1.24554 0.95624 1.05236 0.95182 1.88417 1.20270 1.21372 1.71989 1.24591 0.94631 0.95071 0.94331 1.48335 1.48471 1.17939 1.19327 1.21128 0.78982 0.88740 0.79161 1.90696 1.36723 1.61742 1.55367 1.21719 1.04021 0.92322 0.98286 1.21227 0.99276 0.97285 0.95325 1.21435 1.00237 0.94834 0.96648 1.19049 0.94294 0.95241 0.93217 1.21746 1.28577 1.03529 1.04001 0.91469 1.26116 0.95164 1.02250 0.96977 1.70141 1.35184 1.40039 1.12573 0.85363 0.77977 0.78697 0.78497 1.19538 1.20982 1.18326 1.22276 0.99022 0.80556 1.04380 1.23491 1.00127 0.96216 0.99554 1.23485 1.04638 1.03482 0.92272 0.90901 0.93633 0.88854 0.87183 0.81838 0.83887 0.87338 0.86783 0.85422 0.93378 0.94588 0.92258 0.91516 0.99558 1.00036 0.92852 0.82915 0.84856 0.87864 0.90486 0.86072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.49 9.78 127.77 1.25 2.74 16 2 N -0.59 -11.10 3.20 -822.61 -2.63 -13.73 16 3 C 0.51 12.85 5.62 87.66 0.49 13.35 16 4 O -0.57 -19.85 15.59 -3.05 -0.05 -19.90 16 5 C 0.12 2.26 2.12 44.96 0.10 2.36 16 6 H 0.11 2.11 7.43 -2.38 -0.02 2.09 16 7 C -0.06 -0.61 6.24 72.51 0.45 -0.16 16 8 S -0.25 -3.33 23.43 -56.49 -1.32 -4.66 16 9 C 0.15 2.25 7.21 127.56 0.92 3.17 16 10 N -0.60 -13.76 2.66 -807.48 -2.15 -15.91 16 11 C 0.53 16.24 7.02 87.66 0.62 16.85 16 12 O -0.57 -22.66 15.25 -3.03 -0.05 -22.70 16 13 C -0.12 -3.39 4.49 29.85 0.13 -3.25 16 14 C -0.09 -3.56 4.50 30.59 0.14 -3.42 16 15 C -0.09 -3.97 5.15 30.59 0.16 -3.81 16 16 C 0.02 1.08 4.97 29.85 0.15 1.22 16 17 C -0.54 -31.89 9.11 25.60 0.23 -31.66 16 18 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 19 C -0.01 -0.48 5.46 84.65 0.46 -0.02 16 20 N -0.94 -60.07 13.29 21.45 0.28 -59.78 16 21 Si 0.97 45.47 29.54 68.60 2.03 47.50 16 22 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 23 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 24 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 25 C 0.04 0.43 5.41 44.99 0.24 0.67 16 26 C -0.16 -0.98 9.71 30.59 0.30 -0.68 16 27 C -0.20 -2.14 10.32 30.59 0.32 -1.82 16 28 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.04 1.15 7.49 -2.39 -0.02 1.13 16 30 H 0.09 1.23 6.24 -2.39 -0.01 1.21 16 31 H 0.11 1.16 7.85 -2.39 -0.02 1.14 16 32 H 0.16 0.51 6.73 -2.39 -0.02 0.50 16 33 H 0.14 1.63 7.13 -2.39 -0.02 1.61 16 34 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.11 2.69 8.14 -2.38 -0.02 2.67 16 36 H 0.13 2.60 7.63 -2.39 -0.02 2.58 16 37 H 0.05 1.96 8.10 -2.39 -0.02 1.94 16 38 H 0.04 1.55 8.10 -2.39 -0.02 1.53 16 39 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.07 2.56 8.14 -2.39 -0.02 2.55 16 41 H -0.01 -0.86 8.14 -2.38 -0.02 -0.88 16 42 H -0.02 -1.17 8.14 -2.39 -0.02 -1.19 16 43 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 44 H 0.15 0.74 5.38 -2.39 -0.01 0.72 16 45 H 0.13 0.19 8.14 -2.38 -0.02 0.17 16 46 H 0.10 0.67 6.29 -2.39 -0.02 0.66 16 47 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -87.07 397.24 3.01 -84.06 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: 0.95 Total: 9.58 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: 5.95 Total: -4.45 kcal Atomic # 7 Polarization: -84.93 SS G_CDS: -4.50 Total: -89.43 kcal Atomic # 8 Polarization: -42.51 SS G_CDS: -0.09 Total: -42.60 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Atomic # 16 Polarization: -3.33 SS G_CDS: -1.32 Total: -4.66 kcal Total: -87.07 3.01 -84.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588925231.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.594 kcal (2) G-P(sol) polarization free energy of solvation -87.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds