Wall clock time and date at job start Sat Apr 11 2020 06:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 C 1.53001 * 109.46508 * 119.99286 * 2 1 3 5 5 N 1.46507 * 109.46637 * 174.99939 * 4 2 1 6 6 C 1.34775 * 119.99726 * 180.02562 * 5 4 2 7 7 O 1.21284 * 120.00134 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.99903 * 180.02562 * 6 5 4 9 9 S 1.81000 * 109.47095 * 179.97438 * 8 6 5 10 10 C 1.76204 * 99.99908 * 179.97438 * 9 8 6 11 11 H 1.08003 * 119.99662 * 0.02562 * 10 9 8 12 12 C 1.38796 * 120.00205 * 180.02562 * 10 9 8 13 13 N 1.31639 * 119.99509 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00257 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47063 * 89.99915 * 14 12 10 16 16 H 1.48498 * 109.47048 * 210.00098 * 14 12 10 17 17 H 1.48504 * 109.47066 * 330.00127 * 14 12 10 18 18 N 1.46497 * 109.47335 * 239.99136 * 2 1 3 19 19 C 1.34777 * 119.99525 * 84.99977 * 18 2 1 20 20 O 1.21283 * 120.00463 * 0.02562 * 19 18 2 21 21 C 1.50700 * 119.99675 * 179.72583 * 19 18 2 22 22 C 1.50703 * 109.47148 * 180.28037 * 21 19 18 23 23 C 1.29437 * 117.96642 * 94.73423 * 22 21 19 24 24 C 1.50062 * 124.08201 * 180.23927 * 23 22 21 25 25 C 1.53028 * 110.19811 * 343.31709 * 24 23 22 26 26 C 1.53392 * 108.43919 * 49.24475 * 25 24 23 27 27 C 1.50066 * 117.95932 * 274.99742 * 22 21 19 28 28 H 1.08994 * 109.47201 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47273 * 300.00977 * 1 2 3 30 30 H 1.08998 * 109.46811 * 60.00625 * 1 2 3 31 31 H 1.08995 * 109.47553 * 294.99926 * 4 2 1 32 32 H 1.08998 * 109.47075 * 55.00372 * 4 2 1 33 33 H 0.97000 * 120.00165 * 0.02562 * 5 4 2 34 34 H 1.08995 * 109.46677 * 299.99657 * 8 6 5 35 35 H 1.09000 * 109.47443 * 59.99182 * 8 6 5 36 36 H 0.96997 * 119.99635 * 180.02562 * 13 12 10 37 37 H 0.97000 * 120.00580 * 265.00723 * 18 2 1 38 38 H 1.09009 * 109.47352 * 300.27556 * 21 19 18 39 39 H 1.08998 * 109.47585 * 60.27844 * 21 19 18 40 40 H 1.08004 * 117.96292 * 0.46618 * 23 22 21 41 41 H 1.09004 * 109.48882 * 222.99851 * 24 23 22 42 42 H 1.08993 * 109.18184 * 103.44161 * 24 23 22 43 43 H 1.09001 * 109.64240 * 289.56635 * 25 24 23 44 44 H 1.08998 * 109.81483 * 169.03379 * 25 24 23 45 45 H 1.09000 * 109.64534 * 172.88017 * 26 25 24 46 46 H 1.09006 * 109.64012 * 52.25141 * 26 25 24 47 47 H 1.08999 * 109.36065 * 283.05470 * 27 22 21 48 48 H 1.09005 * 109.36124 * 42.77968 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 7 3.5000 -0.8263 1.1907 6 6 4.1729 -1.4290 2.1910 7 8 3.5697 -1.8839 3.1398 8 6 5.6749 -1.5367 2.1310 9 16 6.2781 -2.3899 3.6089 10 6 8.0099 -2.3771 3.2841 11 1 8.3862 -1.9239 2.3788 12 6 8.8905 -2.9495 4.1916 13 7 8.4317 -3.5023 5.2947 14 14 10.7264 -2.9353 3.8476 15 1 11.3277 -1.7037 4.4195 16 1 11.3557 -4.1281 4.4693 17 1 10.9555 -2.9628 2.3806 18 7 2.0185 -0.6908 -1.1960 19 6 2.1472 -0.0185 -2.3570 20 8 1.8591 1.1584 -2.4116 21 6 2.6554 -0.7275 -3.5859 22 6 2.7114 0.2421 -4.7382 23 6 3.8351 0.8391 -4.9751 24 6 4.0432 1.8318 -6.0811 25 6 2.9123 1.7250 -7.1065 26 6 1.5742 1.7460 -6.3570 27 6 1.4591 0.4598 -5.5360 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8898 30 1 -0.3633 0.5137 -0.8900 31 1 1.7516 -0.1581 2.1370 32 1 1.6053 -1.7197 1.2953 33 1 3.9825 -0.4622 0.4321 34 1 5.9636 -2.0991 1.2431 35 1 6.1093 -0.5380 2.0856 36 1 9.0471 -3.9019 5.9291 37 1 2.2491 -1.6319 -1.1524 38 1 3.6539 -1.1197 -3.3923 39 1 1.9842 -1.5494 -3.8349 40 1 4.6765 0.6056 -4.3395 41 1 4.9961 1.6345 -6.5723 42 1 4.0567 2.8376 -5.6616 43 1 3.0072 0.7912 -7.6607 44 1 2.9589 2.5672 -7.7969 45 1 0.7539 1.7983 -7.0730 46 1 1.5400 2.6093 -5.6924 47 1 1.3069 -0.3851 -6.2075 48 1 0.6088 0.5408 -4.8588 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001534028611.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:43 Heat of formation + Delta-G solvation = -86.813157 kcal Electronic energy + Delta-G solvation = -26482.194295 eV Core-core repulsion = 22662.387312 eV Total energy + Delta-G solvation = -3819.806983 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.44356 -39.27712 -38.53239 -36.45805 -33.71017 -33.26418 -32.45009 -31.40725 -31.03999 -29.42853 -27.63982 -26.01957 -25.39422 -23.61371 -22.58423 -21.49014 -20.69137 -20.38370 -18.00780 -17.88563 -17.38598 -16.84140 -16.30781 -15.93701 -15.80814 -15.46727 -15.04725 -14.82456 -14.69028 -14.23167 -14.10034 -13.87093 -13.78572 -13.53251 -13.12151 -13.02762 -12.92210 -12.83080 -12.61862 -12.51870 -12.40887 -12.22668 -11.98559 -11.83332 -11.29998 -11.10158 -11.08329 -11.04679 -10.78337 -10.77880 -10.54299 -10.15695 -9.84509 -9.52430 -9.39183 -9.09743 -9.04490 -8.97929 -8.26978 -6.52934 -6.24011 -3.94860 1.89249 2.38115 2.88507 3.00745 3.06230 3.20820 3.26437 3.30289 3.67136 4.18131 4.23658 4.34579 4.37526 4.60281 4.65331 4.78590 4.83841 4.89585 4.96765 5.02891 5.10316 5.11134 5.11347 5.25860 5.27753 5.31320 5.32186 5.39614 5.50191 5.52800 5.60505 5.65514 5.66559 5.73143 5.75063 5.84408 5.86813 5.89269 6.02740 6.09775 6.17165 6.35315 6.50918 6.71609 7.18921 7.57180 7.61548 7.95580 8.32887 8.53697 9.21380 10.83379 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012173 B = 0.002123 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.609949 B =13185.859281 C =15198.653413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.132 3.868 3 H 0.095 0.905 4 C 0.113 3.887 5 N -0.740 5.740 6 C 0.532 3.468 7 O -0.516 6.516 8 C -0.154 4.154 9 S -0.059 6.059 10 C -0.536 4.536 11 H 0.072 0.928 12 C 0.073 3.927 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 N -0.730 5.730 19 C 0.516 3.484 20 O -0.530 6.530 21 C -0.112 4.112 22 C -0.103 4.103 23 C -0.144 4.144 24 C -0.089 4.089 25 C -0.120 4.120 26 C -0.119 4.119 27 C -0.078 4.078 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.398 0.602 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.268 0.732 37 H 0.403 0.597 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.102 0.898 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.066 0.934 47 H 0.069 0.931 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.270 7.942 -23.957 29.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.027 3.973 3 H 0.113 0.887 4 C -0.012 4.012 5 N -0.395 5.395 6 C 0.318 3.682 7 O -0.390 6.390 8 C -0.304 4.304 9 S 0.167 5.833 10 C -0.684 4.684 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.203 1.203 16 H -0.207 1.207 17 H -0.197 1.197 18 N -0.383 5.383 19 C 0.303 3.697 20 O -0.406 6.406 21 C -0.152 4.152 22 C -0.104 4.104 23 C -0.162 4.162 24 C -0.126 4.126 25 C -0.158 4.158 26 C -0.156 4.156 27 C -0.115 4.115 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.091 0.909 33 H 0.232 0.768 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.238 0.762 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.120 0.880 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.081 0.919 46 H 0.085 0.915 47 H 0.088 0.912 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -16.456 7.939 -22.214 28.762 hybrid contribution 2.264 0.161 -1.466 2.702 sum -14.192 8.099 -23.680 28.770 Atomic orbital electron populations 1.22096 0.94112 1.02624 1.03030 1.21227 0.94899 0.97830 0.83366 0.88732 1.21614 0.81137 1.01302 0.97103 1.45998 1.06799 1.62021 1.24671 1.20328 0.89534 0.76729 0.81599 1.90712 1.69861 1.46008 1.32430 1.23530 0.93483 1.05716 1.07690 1.85398 1.04649 1.73023 1.20218 1.22860 0.91503 1.44310 1.09713 0.90939 1.24999 0.99624 0.94522 0.94476 1.70020 1.35415 1.35421 1.09397 0.86161 0.82877 0.77870 0.78554 1.20254 1.20737 1.19703 1.46188 1.68092 1.14391 1.09667 1.20647 0.77428 0.87415 0.84239 1.90720 1.49241 1.15830 1.84812 1.20877 1.03700 0.98676 0.91900 1.20233 0.95531 0.98452 0.96175 1.21896 0.97447 0.97936 0.98895 1.20411 0.98729 0.98568 0.94863 1.21603 0.94823 1.01874 0.97485 1.21575 0.97202 0.98128 0.98705 1.20323 0.95624 0.97864 0.97675 0.92040 0.91119 0.91666 0.90014 0.90921 0.76751 0.89270 0.89240 0.92166 0.76239 0.88210 0.88338 0.88008 0.91138 0.90841 0.91857 0.91824 0.91871 0.91482 0.91245 0.91095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 9.48 37.16 0.35 -0.87 16 2 C 0.13 1.13 2.73 -67.93 -0.19 0.94 16 3 H 0.09 0.96 7.58 -51.93 -0.39 0.57 16 4 C 0.11 1.18 5.23 -4.04 -0.02 1.15 16 5 N -0.74 -9.20 5.39 -60.29 -0.32 -9.52 16 6 C 0.53 9.51 7.85 -10.98 -0.09 9.42 16 7 O -0.52 -11.33 15.86 5.55 0.09 -11.24 16 8 C -0.15 -3.02 6.16 36.01 0.22 -2.80 16 9 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 10 C -0.54 -15.12 9.50 30.94 0.29 -14.82 16 11 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 12 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 13 N -0.87 -25.97 13.22 55.49 0.73 -25.24 16 14 Si 0.92 21.26 29.55 -169.99 -5.02 16.24 16 15 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 18 N -0.73 -5.56 4.52 -53.80 -0.24 -5.81 16 19 C 0.52 4.74 7.79 -10.98 -0.09 4.65 16 20 O -0.53 -6.86 15.70 5.55 0.09 -6.77 16 21 C -0.11 -0.77 5.71 -29.03 -0.17 -0.93 16 22 C -0.10 -0.85 4.33 -100.94 -0.44 -1.29 16 23 C -0.14 -1.22 9.37 -35.90 -0.34 -1.55 16 24 C -0.09 -0.65 6.11 -28.18 -0.17 -0.83 16 25 C -0.12 -0.79 6.01 -26.51 -0.16 -0.95 16 26 C -0.12 -0.86 6.01 -26.52 -0.16 -1.02 16 27 C -0.08 -0.59 5.80 -28.18 -0.16 -0.75 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.40 4.16 8.14 -40.82 -0.33 3.82 16 34 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 35 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 36 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.40 2.44 8.60 -40.82 -0.35 2.09 16 38 H 0.10 0.57 7.80 -51.92 -0.41 0.16 16 39 H 0.10 0.50 8.11 -51.93 -0.42 0.07 16 40 H 0.10 0.84 7.74 -52.48 -0.41 0.43 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.40 8.12 -51.93 -0.42 -0.02 16 44 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 47 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 48 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 409.89 15.07 6.18 6.18 Total: -1.00 -35.49 409.89 -10.11 -45.60 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -8.19 Total: 2.03 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -1.20 Total: -7.66 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: 0.17 Total: -40.57 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: 0.18 Total: -18.01 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.49 -10.11 -45.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001534028611.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.216 kcal (2) G-P(sol) polarization free energy of solvation -35.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds