Wall clock time and date at job start Sat Apr 11 2020 06:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 C 1.53001 * 109.46508 * 119.99286 * 2 1 3 5 5 N 1.46507 * 109.46637 * 174.99939 * 4 2 1 6 6 C 1.34775 * 119.99726 * 180.02562 * 5 4 2 7 7 O 1.21284 * 120.00134 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.99903 * 180.02562 * 6 5 4 9 9 S 1.81000 * 109.47095 * 179.97438 * 8 6 5 10 10 C 1.76204 * 99.99908 * 179.97438 * 9 8 6 11 11 H 1.08003 * 119.99662 * 0.02562 * 10 9 8 12 12 C 1.38796 * 120.00205 * 180.02562 * 10 9 8 13 13 N 1.31639 * 119.99509 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00257 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47063 * 89.99915 * 14 12 10 16 16 H 1.48498 * 109.47048 * 210.00098 * 14 12 10 17 17 H 1.48504 * 109.47066 * 330.00127 * 14 12 10 18 18 N 1.46497 * 109.47335 * 239.99136 * 2 1 3 19 19 C 1.34777 * 119.99525 * 84.99977 * 18 2 1 20 20 O 1.21283 * 120.00463 * 0.02562 * 19 18 2 21 21 C 1.50700 * 119.99675 * 179.72583 * 19 18 2 22 22 C 1.50703 * 109.47148 * 180.28037 * 21 19 18 23 23 C 1.29437 * 117.96642 * 94.73423 * 22 21 19 24 24 C 1.50062 * 124.08201 * 180.23927 * 23 22 21 25 25 C 1.53028 * 110.19811 * 343.31709 * 24 23 22 26 26 C 1.53392 * 108.43919 * 49.24475 * 25 24 23 27 27 C 1.50066 * 117.95932 * 274.99742 * 22 21 19 28 28 H 1.08994 * 109.47201 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47273 * 300.00977 * 1 2 3 30 30 H 1.08998 * 109.46811 * 60.00625 * 1 2 3 31 31 H 1.08995 * 109.47553 * 294.99926 * 4 2 1 32 32 H 1.08998 * 109.47075 * 55.00372 * 4 2 1 33 33 H 0.97000 * 120.00165 * 0.02562 * 5 4 2 34 34 H 1.08995 * 109.46677 * 299.99657 * 8 6 5 35 35 H 1.09000 * 109.47443 * 59.99182 * 8 6 5 36 36 H 0.96997 * 119.99635 * 180.02562 * 13 12 10 37 37 H 0.97000 * 120.00580 * 265.00723 * 18 2 1 38 38 H 1.09009 * 109.47352 * 300.27556 * 21 19 18 39 39 H 1.08998 * 109.47585 * 60.27844 * 21 19 18 40 40 H 1.08004 * 117.96292 * 0.46618 * 23 22 21 41 41 H 1.09004 * 109.48882 * 222.99851 * 24 23 22 42 42 H 1.08993 * 109.18184 * 103.44161 * 24 23 22 43 43 H 1.09001 * 109.64240 * 289.56635 * 25 24 23 44 44 H 1.08998 * 109.81483 * 169.03379 * 25 24 23 45 45 H 1.09000 * 109.64534 * 172.88017 * 26 25 24 46 46 H 1.09006 * 109.64012 * 52.25141 * 26 25 24 47 47 H 1.08999 * 109.36065 * 283.05470 * 27 22 21 48 48 H 1.09005 * 109.36124 * 42.77968 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 7 3.5000 -0.8263 1.1907 6 6 4.1729 -1.4290 2.1910 7 8 3.5697 -1.8839 3.1398 8 6 5.6749 -1.5367 2.1310 9 16 6.2781 -2.3899 3.6089 10 6 8.0099 -2.3771 3.2841 11 1 8.3862 -1.9239 2.3788 12 6 8.8905 -2.9495 4.1916 13 7 8.4317 -3.5023 5.2947 14 14 10.7264 -2.9353 3.8476 15 1 11.3277 -1.7037 4.4195 16 1 11.3557 -4.1281 4.4693 17 1 10.9555 -2.9628 2.3806 18 7 2.0185 -0.6908 -1.1960 19 6 2.1472 -0.0185 -2.3570 20 8 1.8591 1.1584 -2.4116 21 6 2.6554 -0.7275 -3.5859 22 6 2.7114 0.2421 -4.7382 23 6 3.8351 0.8391 -4.9751 24 6 4.0432 1.8318 -6.0811 25 6 2.9123 1.7250 -7.1065 26 6 1.5742 1.7460 -6.3570 27 6 1.4591 0.4598 -5.5360 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8898 30 1 -0.3633 0.5137 -0.8900 31 1 1.7516 -0.1581 2.1370 32 1 1.6053 -1.7197 1.2953 33 1 3.9825 -0.4622 0.4321 34 1 5.9636 -2.0991 1.2431 35 1 6.1093 -0.5380 2.0856 36 1 9.0471 -3.9019 5.9291 37 1 2.2491 -1.6319 -1.1524 38 1 3.6539 -1.1197 -3.3923 39 1 1.9842 -1.5494 -3.8349 40 1 4.6765 0.6056 -4.3395 41 1 4.9961 1.6345 -6.5723 42 1 4.0567 2.8376 -5.6616 43 1 3.0072 0.7912 -7.6607 44 1 2.9589 2.5672 -7.7969 45 1 0.7539 1.7983 -7.0730 46 1 1.5400 2.6093 -5.6924 47 1 1.3069 -0.3851 -6.2075 48 1 0.6088 0.5408 -4.8588 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001534028611.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:42 Heat of formation + Delta-G solvation = -110.407288 kcal Electronic energy + Delta-G solvation = -26483.217414 eV Core-core repulsion = 22662.387312 eV Total energy + Delta-G solvation = -3820.830101 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.23769 -40.51193 -39.21755 -37.39640 -34.82022 -34.57821 -33.89621 -32.24683 -31.61079 -30.81019 -28.21878 -27.74063 -26.80891 -24.19398 -23.24958 -22.18035 -21.74933 -21.39640 -19.85967 -18.48410 -18.30058 -17.77998 -17.62602 -16.92224 -16.86860 -16.63137 -16.37809 -16.07308 -15.82428 -15.35471 -14.84874 -14.83582 -14.56689 -14.51371 -14.39478 -14.21278 -13.88837 -13.62866 -13.47359 -13.25849 -13.16609 -13.10985 -13.03405 -12.89654 -12.87609 -12.61290 -12.54945 -12.07273 -11.72659 -11.65796 -11.32986 -11.14481 -11.10156 -11.00488 -10.92404 -10.27968 -10.19824 -10.14379 -9.64152 -8.66388 -8.34855 -6.12587 1.26077 1.27641 1.42304 1.46737 1.56936 1.59068 1.67656 2.17374 2.27257 2.36142 2.99340 3.31562 3.55750 3.67139 3.81722 3.94390 4.01194 4.04929 4.07416 4.24769 4.29253 4.29728 4.36431 4.48877 4.50540 4.56954 4.58361 4.70520 4.71363 4.74224 4.76100 4.78830 4.97360 5.01212 5.04172 5.10216 5.19453 5.21687 5.33044 5.36920 5.41944 5.46928 5.48517 5.76750 6.12037 6.19732 6.42149 6.54738 7.06691 7.19404 7.27589 8.74185 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012173 B = 0.002123 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.609949 B =13185.859281 C =15198.653413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.142 3.858 3 H 0.081 0.919 4 C 0.116 3.884 5 N -0.713 5.713 6 C 0.536 3.464 7 O -0.562 6.562 8 C -0.131 4.131 9 S -0.148 6.148 10 C -0.546 4.546 11 H 0.082 0.918 12 C 0.013 3.987 13 N -0.910 5.910 14 Si 0.998 3.002 15 H -0.269 1.269 16 H -0.278 1.278 17 H -0.258 1.258 18 N -0.720 5.720 19 C 0.517 3.483 20 O -0.572 6.572 21 C -0.109 4.109 22 C -0.112 4.112 23 C -0.158 4.158 24 C -0.092 4.092 25 C -0.117 4.117 26 C -0.120 4.120 27 C -0.079 4.079 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.412 0.588 34 H 0.112 0.888 35 H 0.105 0.895 36 H 0.271 0.729 37 H 0.414 0.586 38 H 0.115 0.885 39 H 0.121 0.879 40 H 0.101 0.899 41 H 0.080 0.920 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.047 0.953 47 H 0.085 0.915 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.802 7.884 -26.268 31.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.037 3.963 3 H 0.100 0.900 4 C -0.008 4.008 5 N -0.367 5.367 6 C 0.322 3.678 7 O -0.440 6.440 8 C -0.282 4.282 9 S 0.079 5.921 10 C -0.694 4.694 11 H 0.100 0.900 12 C -0.192 4.192 13 N -0.547 5.547 14 Si 0.819 3.181 15 H -0.195 1.195 16 H -0.203 1.203 17 H -0.182 1.182 18 N -0.374 5.374 19 C 0.305 3.695 20 O -0.450 6.450 21 C -0.148 4.148 22 C -0.113 4.113 23 C -0.176 4.176 24 C -0.129 4.129 25 C -0.155 4.155 26 C -0.157 4.157 27 C -0.116 4.116 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.249 0.751 34 H 0.130 0.870 35 H 0.123 0.877 36 H 0.080 0.920 37 H 0.250 0.750 38 H 0.134 0.866 39 H 0.139 0.861 40 H 0.119 0.881 41 H 0.098 0.902 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.093 0.907 46 H 0.066 0.934 47 H 0.103 0.897 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.002 7.884 -24.571 30.364 hybrid contribution 2.001 0.240 -0.814 2.173 sum -14.001 8.123 -25.385 30.107 Atomic orbital electron populations 1.22044 0.93036 1.03335 1.02912 1.21048 0.95554 0.96839 0.82830 0.90047 1.21727 0.79336 1.01840 0.97893 1.45721 1.07768 1.59846 1.23387 1.20001 0.88791 0.76958 0.82020 1.90705 1.70345 1.48438 1.34485 1.23377 0.94836 1.05654 1.04363 1.85556 1.05754 1.74960 1.25840 1.23197 0.91754 1.44304 1.10126 0.89978 1.26120 1.05163 0.93841 0.94072 1.70182 1.37353 1.36522 1.10626 0.84965 0.75937 0.78062 0.79095 1.19460 1.20285 1.18159 1.46105 1.67465 1.14803 1.09013 1.21036 0.76594 0.86913 0.84942 1.90712 1.51163 1.17708 1.85439 1.20930 1.05010 0.98691 0.90201 1.20466 0.95588 0.98629 0.96573 1.22064 0.97723 0.98405 0.99437 1.20451 0.99610 0.97864 0.94955 1.21594 0.93987 1.02586 0.97309 1.21578 0.98173 0.97282 0.98682 1.20351 0.94951 0.98539 0.97735 0.90901 0.90393 0.92651 0.90436 0.90325 0.75148 0.87011 0.87652 0.92002 0.74954 0.86642 0.86060 0.88092 0.90196 0.91717 0.91201 0.90948 0.90672 0.93426 0.89681 0.92187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.48 71.98 0.68 -1.43 16 2 C 0.14 2.21 2.73 45.00 0.12 2.33 16 3 H 0.08 1.55 7.58 -2.39 -0.02 1.54 16 4 C 0.12 2.21 5.23 86.38 0.45 2.66 16 5 N -0.71 -16.29 5.39 -463.04 -2.49 -18.79 16 6 C 0.54 18.59 7.85 87.66 0.69 19.28 16 7 O -0.56 -24.71 15.86 -3.04 -0.05 -24.76 16 8 C -0.13 -5.00 6.16 71.24 0.44 -4.56 16 9 S -0.15 -8.07 20.57 -56.49 -1.16 -9.23 16 10 C -0.55 -30.75 9.50 67.95 0.65 -30.10 16 11 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 12 C 0.01 0.72 5.49 84.86 0.47 1.19 16 13 N -0.91 -55.41 13.22 21.65 0.29 -55.12 16 14 Si 1.00 43.15 29.55 68.60 2.03 45.18 16 15 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 16 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 17 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 18 N -0.72 -9.42 4.52 -442.52 -2.00 -11.42 16 19 C 0.52 8.65 7.79 87.66 0.68 9.34 16 20 O -0.57 -14.45 15.70 -3.04 -0.05 -14.49 16 21 C -0.11 -1.26 5.71 29.10 0.17 -1.09 16 22 C -0.11 -1.69 4.33 -15.09 -0.07 -1.76 16 23 C -0.16 -2.52 9.37 27.04 0.25 -2.26 16 24 C -0.09 -1.28 6.11 29.66 0.18 -1.10 16 25 C -0.12 -1.39 6.01 30.74 0.18 -1.21 16 26 C -0.12 -1.63 6.01 30.73 0.18 -1.45 16 27 C -0.08 -1.09 5.80 29.66 0.17 -0.92 16 28 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.41 7.47 8.14 -92.71 -0.75 6.72 16 34 H 0.11 3.76 8.14 -2.40 -0.02 3.74 16 35 H 0.11 3.69 8.14 -2.40 -0.02 3.67 16 36 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 37 H 0.41 3.82 8.60 -92.71 -0.80 3.02 16 38 H 0.12 0.99 7.80 -2.38 -0.02 0.97 16 39 H 0.12 0.85 8.11 -2.39 -0.02 0.83 16 40 H 0.10 1.55 7.74 -2.91 -0.02 1.53 16 41 H 0.08 0.92 8.14 -2.38 -0.02 0.91 16 42 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.07 0.75 8.12 -2.39 -0.02 0.73 16 44 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.05 0.82 8.12 -2.38 -0.02 0.81 16 47 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 Total: -1.00 -78.92 409.89 1.22 -77.70 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: -0.59 Total: 22.03 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: 5.26 Total: -11.09 kcal Atomic # 7 Polarization: -81.13 SS G_CDS: -4.21 Total: -85.33 kcal Atomic # 8 Polarization: -39.16 SS G_CDS: -0.10 Total: -39.25 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 16 Polarization: -8.07 SS G_CDS: -1.16 Total: -9.23 kcal Total: -78.92 1.22 -77.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001534028611.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.707 kcal (2) G-P(sol) polarization free energy of solvation -78.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds