Wall clock time and date at job start Sat Apr 11 2020 06:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34773 * 120.00252 * 2 1 4 4 O 1.21275 * 120.00172 * 179.97438 * 3 2 1 5 5 C 1.50698 * 119.99864 * 0.02562 * 3 2 1 6 6 C 1.52999 * 109.47471 * 179.97438 * 5 3 2 7 7 C 1.52992 * 109.47558 * 179.97438 * 6 5 3 8 8 C 1.53783 * 113.61528 * 274.14008 * 7 6 5 9 9 C 1.53957 * 87.01653 * 220.04769 * 8 7 6 10 10 C 1.53771 * 87.11357 * 25.36077 * 9 8 7 11 11 C 1.46500 * 119.99883 * 180.02562 * 2 1 3 12 12 C 1.53501 * 114.20747 * 59.99913 * 11 2 1 13 13 N 1.47065 * 87.98741 * 220.14872 * 12 11 2 14 14 C 1.34775 * 136.05752 * 207.08848 * 13 12 11 15 15 O 1.21276 * 119.99984 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00022 * 180.02562 * 14 13 12 17 17 S 1.80998 * 109.47116 * 179.97438 * 16 14 13 18 18 C 1.76199 * 100.00013 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00250 * 0.02562 * 18 17 16 20 20 C 1.38798 * 120.00102 * 179.72368 * 18 17 16 21 21 N 1.31626 * 120.00155 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00292 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47210 * 89.99890 * 22 20 18 24 24 H 1.48504 * 109.47424 * 210.00121 * 22 20 18 25 25 H 1.48502 * 109.46888 * 330.00210 * 22 20 18 26 26 C 1.47067 * 87.88377 * 27.34414 * 13 12 11 27 27 H 1.08997 * 109.47425 * 269.99969 * 1 2 3 28 28 H 1.08998 * 109.46947 * 30.00222 * 1 2 3 29 29 H 1.09000 * 109.47115 * 149.99552 * 1 2 3 30 30 H 1.09004 * 109.47048 * 299.99757 * 5 3 2 31 31 H 1.09000 * 109.47172 * 59.99779 * 5 3 2 32 32 H 1.09003 * 109.46780 * 300.00551 * 6 5 3 33 33 H 1.09005 * 109.46469 * 59.99637 * 6 5 3 34 34 H 1.09004 * 112.84962 * 45.33318 * 7 6 5 35 35 H 1.08997 * 113.61653 * 334.56444 * 8 7 6 36 36 H 1.08998 * 113.61208 * 105.46860 * 8 7 6 37 37 H 1.09006 * 113.53410 * 270.80830 * 9 8 7 38 38 H 1.09005 * 113.66874 * 139.93672 * 9 8 7 39 39 H 1.09001 * 113.61932 * 220.08796 * 10 9 8 40 40 H 1.09006 * 113.68929 * 89.19938 * 10 9 8 41 41 H 1.09001 * 113.28417 * 193.06610 * 11 2 1 42 42 H 1.09001 * 113.46643 * 105.36573 * 12 11 2 43 43 H 1.08996 * 113.46488 * 334.93033 * 12 11 2 44 44 H 1.09001 * 109.47434 * 59.99478 * 16 14 13 45 45 H 1.08999 * 109.47072 * 299.99957 * 16 14 13 46 46 H 0.97004 * 120.00604 * 179.97438 * 21 20 18 47 47 H 1.09001 * 113.47005 * 87.43764 * 26 13 12 48 48 H 1.09003 * 113.46723 * 217.87945 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3516 1.1671 0.0005 5 6 1.3854 2.4722 0.0006 6 6 2.3796 3.6352 0.0011 7 6 1.6147 4.9602 0.0011 8 6 1.2191 5.4431 -1.4044 9 6 1.5844 6.8621 -0.9320 10 6 2.5247 6.1969 0.0868 11 6 2.1975 -1.2687 -0.0006 12 6 1.9059 -2.1633 -1.2134 13 7 1.9168 -3.3161 -0.3004 14 6 2.1840 -4.6331 -0.4033 15 8 2.5087 -5.1042 -1.4726 16 6 2.0782 -5.5205 0.8101 17 16 2.4950 -7.2212 0.3519 18 6 2.2957 -8.0159 1.9118 19 1 1.9969 -7.4416 2.7762 20 6 2.5167 -9.3812 2.0284 21 7 2.8757 -10.0823 0.9738 22 14 2.3062 -10.2237 3.6823 23 1 0.9036 -10.6901 3.8252 24 1 3.2256 -11.3869 3.7660 25 1 2.6219 -9.2638 4.7705 26 6 1.5013 -2.4006 0.7730 27 1 -0.3634 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8899 -0.5139 30 1 0.7584 2.5302 -0.8892 31 1 0.7591 2.5298 0.8908 32 1 3.0063 3.5770 0.8911 33 1 3.0063 3.5777 -0.8890 34 1 0.7913 4.9736 0.7152 35 1 1.8679 5.0654 -2.1946 36 1 0.1599 5.3153 -1.6278 37 1 0.7518 7.3962 -0.4739 38 1 2.1048 7.4536 -1.6852 39 1 2.5181 6.6768 1.0654 40 1 3.5317 6.0252 -0.2936 41 1 3.2575 -1.1544 0.2258 42 1 2.7144 -2.1807 -1.9443 43 1 0.9319 -1.9771 -1.6659 44 1 1.0595 -5.4879 1.1964 45 1 2.7690 -5.1708 1.5773 46 1 3.0305 -11.0364 1.0553 47 1 0.4207 -2.2770 0.8442 48 1 1.9652 -2.6203 1.7346 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001536326355.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:52 Heat of formation + Delta-G solvation = -40.005966 kcal Electronic energy + Delta-G solvation = -26206.578195 eV Core-core repulsion = 22388.800924 eV Total energy + Delta-G solvation = -3817.777271 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.95933 -40.61815 -39.61839 -38.89706 -35.92755 -34.60521 -33.67258 -31.94022 -29.43331 -27.92101 -27.71866 -27.22466 -26.90507 -26.37105 -23.71293 -22.24208 -20.50812 -20.26135 -20.00243 -19.57628 -18.34183 -18.15642 -17.41024 -17.19883 -16.89866 -16.70649 -16.38999 -16.20219 -15.80120 -15.39815 -15.28496 -14.78451 -14.64836 -14.23080 -14.04522 -13.86883 -13.76098 -13.66325 -13.58404 -13.26050 -13.19000 -13.12274 -13.05236 -12.89601 -12.82871 -12.62505 -12.20349 -12.12952 -11.84620 -11.76223 -11.37604 -11.17173 -11.15663 -11.08173 -10.94097 -10.70331 -10.32356 -9.89412 -9.69434 -8.71115 -8.36231 -6.15795 1.12467 1.39326 1.42124 1.44875 1.53533 1.59106 1.73785 2.18931 2.25523 2.98125 3.14035 3.22877 3.49173 3.58957 3.71487 3.81726 3.82430 3.92969 4.03053 4.05218 4.20043 4.24055 4.28611 4.37523 4.38780 4.41307 4.46090 4.51315 4.69806 4.70738 4.75229 4.79534 4.89647 4.92307 4.94449 4.96219 5.04974 5.09053 5.13509 5.22638 5.35239 5.40005 5.45525 5.49463 5.72321 6.18080 6.32200 6.50599 6.99734 7.04776 7.15438 8.73157 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.032407 B = 0.001602 C = 0.001570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.805316 B =17474.842073 C =17825.838332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.600 5.600 3 C 0.508 3.492 4 O -0.588 6.588 5 C -0.126 4.126 6 C -0.093 4.093 7 C -0.104 4.104 8 C -0.138 4.138 9 C -0.144 4.144 10 C -0.147 4.147 11 C 0.121 3.879 12 C 0.090 3.910 13 N -0.649 5.649 14 C 0.564 3.436 15 O -0.566 6.566 16 C -0.117 4.117 17 S -0.151 6.151 18 C -0.547 4.547 19 H 0.084 0.916 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 1.000 3.000 23 H -0.266 1.266 24 H -0.278 1.278 25 H -0.258 1.258 26 C 0.096 3.904 27 H 0.082 0.918 28 H 0.102 0.898 29 H 0.081 0.919 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.052 0.948 33 H 0.049 0.951 34 H 0.106 0.894 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.111 0.889 42 H 0.063 0.937 43 H 0.112 0.888 44 H 0.111 0.889 45 H 0.105 0.895 46 H 0.272 0.728 47 H 0.124 0.876 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.236 35.497 1.465 37.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.333 5.333 3 C 0.299 3.701 4 O -0.468 6.468 5 C -0.166 4.166 6 C -0.131 4.131 7 C -0.122 4.122 8 C -0.176 4.176 9 C -0.181 4.181 10 C -0.184 4.184 11 C 0.015 3.985 12 C -0.034 4.034 13 N -0.386 5.386 14 C 0.354 3.646 15 O -0.444 6.444 16 C -0.268 4.268 17 S 0.076 5.924 18 C -0.695 4.695 19 H 0.102 0.898 20 C -0.190 4.190 21 N -0.548 5.548 22 Si 0.822 3.178 23 H -0.191 1.191 24 H -0.203 1.203 25 H -0.182 1.182 26 C -0.027 4.027 27 H 0.101 0.899 28 H 0.121 0.879 29 H 0.099 0.901 30 H 0.137 0.863 31 H 0.140 0.860 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.124 0.876 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.129 0.871 42 H 0.082 0.918 43 H 0.129 0.871 44 H 0.129 0.871 45 H 0.124 0.876 46 H 0.081 0.919 47 H 0.142 0.858 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.050 34.422 -0.202 35.859 hybrid contribution 0.099 -0.572 1.592 1.695 sum -9.951 33.850 1.390 35.310 Atomic orbital electron populations 1.22262 0.76297 1.05329 1.04281 1.47820 1.08565 1.03957 1.72920 1.21595 0.87722 0.86641 0.74125 1.90712 1.16595 1.88063 1.51400 1.21754 0.99209 0.88864 1.06724 1.21285 0.97081 0.93005 1.01755 1.22573 0.98731 0.92565 0.98353 1.23023 1.01959 0.96194 0.96384 1.22863 0.99726 0.96656 0.98873 1.22974 0.98234 0.97253 0.99940 1.22545 0.97997 0.82371 0.95630 1.23600 1.03336 0.81294 0.95182 1.49213 1.68163 1.04980 1.16227 1.19623 0.75654 0.80140 0.89196 1.90700 1.48874 1.73622 1.31189 1.23257 1.06468 0.98176 0.98931 1.85621 1.90340 0.98886 1.17523 1.23191 1.54302 0.96620 0.95365 0.89797 1.26144 0.93713 0.96981 1.02207 1.70183 1.44628 1.08230 1.31727 0.84930 0.78546 0.77601 0.76746 1.19094 1.20315 1.18194 1.23733 1.02400 0.83744 0.92789 0.89907 0.87928 0.90061 0.86305 0.85995 0.92916 0.93173 0.87552 0.90911 0.90271 0.89352 0.91864 0.91302 0.91167 0.87076 0.91797 0.87061 0.87062 0.87634 0.91931 0.85803 0.88750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.21 8.92 127.77 1.14 1.35 16 2 N -0.60 -7.52 3.11 -821.40 -2.56 -10.07 16 3 C 0.51 8.28 7.67 87.66 0.67 8.96 16 4 O -0.59 -15.82 15.49 -3.01 -0.05 -15.87 16 5 C -0.13 -0.97 4.25 29.85 0.13 -0.84 16 6 C -0.09 -1.09 4.33 30.59 0.13 -0.96 16 7 C -0.10 -0.80 3.64 -10.27 -0.04 -0.84 16 8 C -0.14 -1.01 7.65 31.18 0.24 -0.77 16 9 C -0.14 -1.11 8.09 31.18 0.25 -0.86 16 10 C -0.15 -1.38 7.64 31.12 0.24 -1.15 16 11 C 0.12 2.19 4.57 45.55 0.21 2.40 16 12 C 0.09 1.95 8.17 83.18 0.68 2.63 16 13 N -0.65 -18.02 3.69 -857.85 -3.16 -21.19 16 14 C 0.56 22.35 8.10 87.66 0.71 23.06 16 15 O -0.57 -28.02 16.64 -3.02 -0.05 -28.07 16 16 C -0.12 -4.82 5.98 71.24 0.43 -4.40 16 17 S -0.15 -8.54 20.57 -56.49 -1.16 -9.70 16 18 C -0.55 -31.42 9.50 67.95 0.65 -30.77 16 19 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 20 C 0.01 0.82 5.49 84.86 0.47 1.29 16 21 N -0.91 -56.27 13.22 21.65 0.29 -55.99 16 22 Si 1.00 43.53 29.55 68.60 2.03 45.56 16 23 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 24 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 25 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 26 C 0.10 1.63 7.84 83.26 0.65 2.28 16 27 H 0.08 0.05 8.14 -2.39 -0.02 0.03 16 28 H 0.10 -0.10 6.44 -2.39 -0.02 -0.12 16 29 H 0.08 0.27 6.17 -2.39 -0.01 0.26 16 30 H 0.12 0.38 7.40 -2.38 -0.02 0.36 16 31 H 0.12 0.31 8.11 -2.39 -0.02 0.29 16 32 H 0.05 0.81 8.10 -2.39 -0.02 0.79 16 33 H 0.05 0.79 7.83 -2.38 -0.02 0.77 16 34 H 0.11 0.50 8.14 -2.38 -0.02 0.48 16 35 H 0.07 0.66 7.92 -2.39 -0.02 0.64 16 36 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.09 0.52 8.14 -2.38 -0.02 0.50 16 38 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 39 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.07 0.81 8.10 -2.38 -0.02 0.79 16 41 H 0.11 2.64 7.29 -2.39 -0.02 2.62 16 42 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.11 1.82 6.96 -2.39 -0.02 1.80 16 44 H 0.11 4.06 8.14 -2.40 -0.02 4.04 16 45 H 0.11 3.98 8.14 -2.40 -0.02 3.96 16 46 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 47 H 0.12 1.31 6.57 -2.39 -0.02 1.29 16 48 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -85.71 403.87 2.83 -82.89 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: 0.94 Total: 11.04 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: 6.55 Total: 1.40 kcal Atomic # 7 Polarization: -81.81 SS G_CDS: -5.44 Total: -87.25 kcal Atomic # 8 Polarization: -43.84 SS G_CDS: -0.10 Total: -43.94 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: -8.54 SS G_CDS: -1.16 Total: -9.70 kcal Total: -85.71 2.83 -82.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536326355.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.883 kcal (2) G-P(sol) polarization free energy of solvation -85.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds