Wall clock time and date at job start Sat Apr 11 2020 06:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34775 * 120.00194 * 2 1 4 4 O 1.21288 * 120.00334 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.99911 * 359.97438 * 3 2 1 6 6 S 1.80999 * 109.47074 * 179.97438 * 5 3 2 7 7 C 1.76204 * 100.00076 * 179.97438 * 6 5 3 8 8 H 1.08001 * 119.99366 * 0.02562 * 7 6 5 9 9 C 1.38798 * 119.99934 * 180.02562 * 7 6 5 10 10 N 1.31628 * 120.00325 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 119.99439 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47073 * 60.00139 * 11 9 7 13 13 H 1.48509 * 109.46400 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47297 * 299.99412 * 11 9 7 15 15 C 1.46501 * 120.00259 * 179.97438 * 2 1 3 16 16 C 1.53783 * 113.60878 * 60.00030 * 15 2 1 17 17 C 1.53784 * 87.08338 * 220.02085 * 16 15 2 18 18 N 1.46499 * 113.61491 * 139.98310 * 17 16 15 19 19 C 1.34777 * 119.99665 * 155.28109 * 18 17 16 20 20 O 1.21283 * 119.99990 * 359.71991 * 19 18 17 21 21 C 1.50698 * 119.99538 * 179.72653 * 19 18 17 22 22 C 1.52999 * 109.47004 * 179.97438 * 21 19 18 23 23 C 1.53779 * 113.61640 * 274.13354 * 22 21 19 24 24 C 1.53951 * 87.02381 * 220.04479 * 23 22 21 25 25 C 1.53782 * 113.61797 * 176.52398 * 22 21 19 26 26 C 1.53780 * 113.61286 * 322.51004 * 15 2 1 27 27 H 1.09003 * 109.47259 * 270.00573 * 1 2 3 28 28 H 1.09007 * 109.47153 * 30.00509 * 1 2 3 29 29 H 1.09000 * 109.47256 * 150.00348 * 1 2 3 30 30 H 1.08997 * 109.46739 * 299.99933 * 5 3 2 31 31 H 1.09001 * 109.47136 * 59.99925 * 5 3 2 32 32 H 0.97000 * 119.99931 * 180.02562 * 10 9 7 33 33 H 1.08993 * 112.91408 * 191.25583 * 15 2 1 34 34 H 1.09000 * 113.60825 * 105.47645 * 16 15 2 35 35 H 1.09001 * 113.62188 * 334.57062 * 16 15 2 36 36 H 1.09002 * 113.61454 * 270.80589 * 17 16 15 37 37 H 0.97001 * 119.99790 * 334.99822 * 18 17 16 38 38 H 1.09003 * 109.47112 * 299.99065 * 21 19 18 39 39 H 1.08993 * 109.47916 * 59.99687 * 21 19 18 40 40 H 1.09010 * 112.85102 * 45.33156 * 22 21 19 41 41 H 1.08994 * 113.61406 * 334.56852 * 23 22 21 42 42 H 1.09002 * 113.60958 * 105.46813 * 23 22 21 43 43 H 1.08996 * 113.54346 * 270.81612 * 24 23 22 44 44 H 1.08998 * 113.66468 * 139.92860 * 24 23 22 45 45 H 1.08998 * 113.61589 * 254.53393 * 25 22 21 46 46 H 1.09001 * 113.60803 * 25.35407 * 25 22 21 47 47 H 1.08998 * 113.61772 * 25.42693 * 26 15 2 48 48 H 1.09001 * 113.61751 * 254.52751 * 26 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0006 6 16 2.5616 3.8480 0.0003 7 6 1.4415 5.2082 -0.0013 8 1 0.3763 5.0305 -0.0020 9 6 1.9283 6.5081 -0.0017 10 7 3.2267 6.7247 -0.0003 11 14 0.7408 7.9500 -0.0027 12 1 -0.1147 7.8876 1.2095 13 1 1.5070 9.2222 -0.0023 14 1 -0.1138 7.8867 -1.2155 15 6 2.1975 -1.2687 0.0006 16 6 1.8953 -2.1549 -1.2194 17 6 1.9129 -3.3527 -0.2550 18 7 0.8716 -4.3450 -0.5327 19 6 1.0403 -5.6250 -0.1459 20 8 2.0563 -5.9563 0.4276 21 6 -0.0336 -6.6445 -0.4262 22 6 0.4051 -8.0082 0.1113 23 6 1.2702 -8.8100 -0.8755 24 6 0.4889 -10.0568 -0.4226 25 6 -0.6603 -9.1055 -0.0493 26 6 1.5373 -2.3608 0.8586 27 1 -0.3634 0.0001 1.0277 28 1 -0.3634 0.8900 -0.5139 29 1 -0.3634 -0.8900 -0.5138 30 1 0.7591 2.5298 -0.8908 31 1 0.7584 2.5303 0.8891 32 1 3.5668 7.6331 -0.0002 33 1 3.2624 -1.1438 0.1965 34 1 2.6998 -2.1746 -1.9546 35 1 0.9182 -1.9670 -1.6644 36 1 2.8998 -3.7983 -0.1300 37 1 0.0590 -4.0800 -0.9914 38 1 -0.9591 -6.3414 0.0634 39 1 -0.1972 -6.7138 -1.5016 40 1 0.8262 -7.9520 1.1152 41 1 1.1019 -8.5445 -1.9191 42 1 2.3268 -8.8351 -0.6091 43 1 0.9337 -10.5616 0.4349 44 1 0.2439 -10.7392 -1.2365 45 1 -1.1598 -9.3688 0.8830 46 1 -1.3581 -8.9202 -0.8658 47 1 0.4623 -2.2291 0.9817 48 1 2.0526 -2.5468 1.8010 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001572550504.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:04 Heat of formation + Delta-G solvation = -37.299578 kcal Electronic energy + Delta-G solvation = -26255.549736 eV Core-core repulsion = 22437.889823 eV Total energy + Delta-G solvation = -3817.659913 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.79308 -39.90706 -38.74196 -37.78511 -34.84570 -33.29663 -32.43890 -30.83863 -29.17555 -27.09335 -26.00659 -26.00170 -25.54116 -24.90928 -23.28934 -20.87492 -20.27160 -19.75991 -19.03482 -17.72704 -17.32337 -17.21048 -16.37784 -16.09505 -15.77657 -15.45601 -15.17662 -15.07920 -14.81395 -14.62300 -14.13207 -13.80245 -13.53730 -13.29318 -13.02664 -12.86807 -12.84492 -12.63612 -12.49202 -12.30668 -12.27876 -11.99851 -11.87516 -11.49490 -11.33376 -11.07049 -11.05624 -11.04881 -10.98875 -10.76715 -10.72955 -10.60325 -10.02348 -9.82325 -9.40059 -9.31759 -9.06929 -8.53439 -8.24260 -6.51408 -6.22361 -3.93344 2.33051 2.71683 2.99216 3.02132 3.22400 3.25340 3.28407 3.58905 4.09265 4.18797 4.19570 4.21635 4.28981 4.36044 4.45898 4.57272 4.65847 4.68164 4.91118 4.92603 5.01142 5.03806 5.12596 5.13159 5.29217 5.33450 5.34237 5.35838 5.44151 5.46466 5.48945 5.51695 5.56240 5.60522 5.68728 5.70185 5.74943 5.85834 5.87734 5.97334 6.10721 6.11415 6.24386 6.62216 7.16531 7.50301 7.58088 7.92239 8.33795 8.52359 9.22644 10.84984 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.044687 B = 0.001567 C = 0.001533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.427646 B =17867.803912 C =18262.398510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.613 5.613 3 C 0.534 3.466 4 O -0.515 6.515 5 C -0.150 4.150 6 S -0.061 6.061 7 C -0.536 4.536 8 H 0.072 0.928 9 C 0.074 3.926 10 N -0.867 5.867 11 Si 0.918 3.082 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.274 1.274 15 C 0.129 3.871 16 C -0.159 4.159 17 C 0.125 3.875 18 N -0.721 5.721 19 C 0.513 3.487 20 O -0.536 6.536 21 C -0.133 4.133 22 C -0.095 4.095 23 C -0.135 4.135 24 C -0.143 4.143 25 C -0.139 4.139 26 C -0.161 4.161 27 H 0.055 0.945 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.269 0.731 33 H 0.124 0.876 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.118 0.882 37 H 0.400 0.600 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.080 0.920 47 H 0.090 0.910 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.893 -30.069 -2.510 32.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.348 5.348 3 C 0.322 3.678 4 O -0.388 6.388 5 C -0.301 4.301 6 S 0.165 5.835 7 C -0.685 4.685 8 H 0.090 0.910 9 C -0.135 4.135 10 N -0.502 5.502 11 Si 0.745 3.255 12 H -0.199 1.199 13 H -0.208 1.208 14 H -0.199 1.199 15 C 0.024 3.976 16 C -0.198 4.198 17 C 0.020 3.980 18 N -0.372 5.372 19 C 0.300 3.700 20 O -0.413 6.413 21 C -0.173 4.173 22 C -0.114 4.114 23 C -0.172 4.172 24 C -0.181 4.181 25 C -0.176 4.176 26 C -0.201 4.201 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.079 0.921 33 H 0.142 0.858 34 H 0.100 0.900 35 H 0.107 0.893 36 H 0.136 0.864 37 H 0.234 0.766 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.117 0.883 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.098 0.902 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.099 0.901 47 H 0.108 0.892 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.197 -30.160 -2.091 31.601 hybrid contribution -2.764 1.166 -0.251 3.011 sum -11.961 -28.994 -2.343 31.452 Atomic orbital electron populations 1.21723 0.79925 1.02951 1.01774 1.47764 1.06526 1.05182 1.75294 1.20389 0.87973 0.84576 0.74870 1.90696 1.13761 1.86777 1.47613 1.23564 1.04570 0.97236 1.04698 1.85415 1.08024 0.93322 1.96709 1.22815 0.94256 0.92230 1.59160 0.91008 1.24985 0.95661 0.98350 0.94507 1.70007 1.11752 1.21778 1.46696 0.86232 0.80196 0.80331 0.78780 1.19944 1.20790 1.19947 1.22235 0.98510 0.81534 0.95277 1.23851 1.03306 0.94550 0.98115 1.22295 0.93188 0.86548 0.95989 1.46015 1.21760 1.08752 1.60681 1.20784 0.88358 0.82848 0.78045 1.90710 1.29645 1.79812 1.41083 1.21725 0.97998 0.94407 1.03156 1.22341 0.97154 0.91167 1.00710 1.22969 0.99605 0.95853 0.98800 1.22827 0.97406 0.96513 1.01321 1.22981 0.96473 0.96372 1.01769 1.23931 1.02062 0.95125 0.98998 0.92668 0.90483 0.91549 0.89250 0.89256 0.92112 0.85834 0.90049 0.89256 0.86368 0.76592 0.88765 0.88860 0.88259 0.90421 0.91179 0.90203 0.91522 0.91426 0.90098 0.89184 0.90352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.76 8.84 59.84 0.53 1.29 16 2 N -0.61 -8.22 3.08 -173.00 -0.53 -8.75 16 3 C 0.53 9.98 7.69 -10.98 -0.08 9.90 16 4 O -0.51 -11.66 15.35 5.55 0.09 -11.57 16 5 C -0.15 -3.01 4.71 36.01 0.17 -2.84 16 6 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 7 C -0.54 -15.18 9.50 30.94 0.29 -14.88 16 8 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 9 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 10 N -0.87 -26.07 13.22 55.49 0.73 -25.33 16 11 Si 0.92 21.23 29.55 -169.99 -5.02 16.21 16 12 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 13 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 14 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 15 C 0.13 1.50 4.20 -67.12 -0.28 1.21 16 16 C -0.16 -1.39 7.37 -25.92 -0.19 -1.58 16 17 C 0.13 1.07 4.24 -67.12 -0.28 0.79 16 18 N -0.72 -4.88 5.35 -53.01 -0.28 -5.16 16 19 C 0.51 4.35 7.83 -10.99 -0.09 4.26 16 20 O -0.54 -6.82 15.39 5.55 0.09 -6.74 16 21 C -0.13 -0.70 5.52 -27.88 -0.15 -0.85 16 22 C -0.10 -0.61 3.11 -89.81 -0.28 -0.89 16 23 C -0.13 -0.89 7.65 -25.83 -0.20 -1.09 16 24 C -0.14 -0.78 8.09 -25.83 -0.21 -0.98 16 25 C -0.14 -0.68 7.65 -25.91 -0.20 -0.87 16 26 C -0.16 -1.48 7.30 -25.92 -0.19 -1.67 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.75 6.44 -51.92 -0.33 0.42 16 29 H 0.07 0.44 6.34 -51.93 -0.33 0.11 16 30 H 0.09 1.64 7.40 -51.92 -0.38 1.26 16 31 H 0.09 1.66 8.11 -51.91 -0.42 1.24 16 32 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 33 H 0.12 1.70 7.24 -51.93 -0.38 1.32 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.09 0.65 6.90 -51.93 -0.36 0.30 16 36 H 0.12 1.22 7.47 -51.93 -0.39 0.83 16 37 H 0.40 1.59 8.73 -40.82 -0.36 1.24 16 38 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.09 0.34 7.87 -51.93 -0.41 -0.07 16 40 H 0.10 0.82 7.73 -51.92 -0.40 0.42 16 41 H 0.08 0.46 7.92 -51.93 -0.41 0.05 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 45 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.08 0.32 8.10 -51.93 -0.42 -0.10 16 47 H 0.09 0.72 6.72 -51.93 -0.35 0.37 16 48 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 401.24 15.07 6.05 6.05 Total: -1.00 -36.04 401.24 -10.22 -46.27 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -7.86 Total: -0.89 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -1.26 Total: -6.20 kcal Atomic # 7 Polarization: -39.17 SS G_CDS: -0.08 Total: -39.25 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: 0.17 Total: -18.31 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.04 -10.22 -46.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001572550504.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.967 kcal (2) G-P(sol) polarization free energy of solvation -36.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds