Wall clock time and date at job start Sat Apr 11 2020 06:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34775 * 120.00194 * 2 1 4 4 O 1.21288 * 120.00334 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.99911 * 359.97438 * 3 2 1 6 6 S 1.80999 * 109.47074 * 179.97438 * 5 3 2 7 7 C 1.76204 * 100.00076 * 179.97438 * 6 5 3 8 8 H 1.08001 * 119.99366 * 0.02562 * 7 6 5 9 9 C 1.38798 * 119.99934 * 180.02562 * 7 6 5 10 10 N 1.31628 * 120.00325 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 119.99439 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47073 * 60.00139 * 11 9 7 13 13 H 1.48509 * 109.46400 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47297 * 299.99412 * 11 9 7 15 15 C 1.46501 * 120.00259 * 179.97438 * 2 1 3 16 16 C 1.53783 * 113.60878 * 60.00030 * 15 2 1 17 17 C 1.53784 * 87.08338 * 220.02085 * 16 15 2 18 18 N 1.46499 * 113.61491 * 139.98310 * 17 16 15 19 19 C 1.34777 * 119.99665 * 155.28109 * 18 17 16 20 20 O 1.21283 * 119.99990 * 359.71991 * 19 18 17 21 21 C 1.50698 * 119.99538 * 179.72653 * 19 18 17 22 22 C 1.52999 * 109.47004 * 179.97438 * 21 19 18 23 23 C 1.53779 * 113.61640 * 274.13354 * 22 21 19 24 24 C 1.53951 * 87.02381 * 220.04479 * 23 22 21 25 25 C 1.53782 * 113.61797 * 176.52398 * 22 21 19 26 26 C 1.53780 * 113.61286 * 322.51004 * 15 2 1 27 27 H 1.09003 * 109.47259 * 270.00573 * 1 2 3 28 28 H 1.09007 * 109.47153 * 30.00509 * 1 2 3 29 29 H 1.09000 * 109.47256 * 150.00348 * 1 2 3 30 30 H 1.08997 * 109.46739 * 299.99933 * 5 3 2 31 31 H 1.09001 * 109.47136 * 59.99925 * 5 3 2 32 32 H 0.97000 * 119.99931 * 180.02562 * 10 9 7 33 33 H 1.08993 * 112.91408 * 191.25583 * 15 2 1 34 34 H 1.09000 * 113.60825 * 105.47645 * 16 15 2 35 35 H 1.09001 * 113.62188 * 334.57062 * 16 15 2 36 36 H 1.09002 * 113.61454 * 270.80589 * 17 16 15 37 37 H 0.97001 * 119.99790 * 334.99822 * 18 17 16 38 38 H 1.09003 * 109.47112 * 299.99065 * 21 19 18 39 39 H 1.08993 * 109.47916 * 59.99687 * 21 19 18 40 40 H 1.09010 * 112.85102 * 45.33156 * 22 21 19 41 41 H 1.08994 * 113.61406 * 334.56852 * 23 22 21 42 42 H 1.09002 * 113.60958 * 105.46813 * 23 22 21 43 43 H 1.08996 * 113.54346 * 270.81612 * 24 23 22 44 44 H 1.08998 * 113.66468 * 139.92860 * 24 23 22 45 45 H 1.08998 * 113.61589 * 254.53393 * 25 22 21 46 46 H 1.09001 * 113.60803 * 25.35407 * 25 22 21 47 47 H 1.08998 * 113.61772 * 25.42693 * 26 15 2 48 48 H 1.09001 * 113.61751 * 254.52751 * 26 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0006 6 16 2.5616 3.8480 0.0003 7 6 1.4415 5.2082 -0.0013 8 1 0.3763 5.0305 -0.0020 9 6 1.9283 6.5081 -0.0017 10 7 3.2267 6.7247 -0.0003 11 14 0.7408 7.9500 -0.0027 12 1 -0.1147 7.8876 1.2095 13 1 1.5070 9.2222 -0.0023 14 1 -0.1138 7.8867 -1.2155 15 6 2.1975 -1.2687 0.0006 16 6 1.8953 -2.1549 -1.2194 17 6 1.9129 -3.3527 -0.2550 18 7 0.8716 -4.3450 -0.5327 19 6 1.0403 -5.6250 -0.1459 20 8 2.0563 -5.9563 0.4276 21 6 -0.0336 -6.6445 -0.4262 22 6 0.4051 -8.0082 0.1113 23 6 1.2702 -8.8100 -0.8755 24 6 0.4889 -10.0568 -0.4226 25 6 -0.6603 -9.1055 -0.0493 26 6 1.5373 -2.3608 0.8586 27 1 -0.3634 0.0001 1.0277 28 1 -0.3634 0.8900 -0.5139 29 1 -0.3634 -0.8900 -0.5138 30 1 0.7591 2.5298 -0.8908 31 1 0.7584 2.5303 0.8891 32 1 3.5668 7.6331 -0.0002 33 1 3.2624 -1.1438 0.1965 34 1 2.6998 -2.1746 -1.9546 35 1 0.9182 -1.9670 -1.6644 36 1 2.8998 -3.7983 -0.1300 37 1 0.0590 -4.0800 -0.9914 38 1 -0.9591 -6.3414 0.0634 39 1 -0.1972 -6.7138 -1.5016 40 1 0.8262 -7.9520 1.1152 41 1 1.1019 -8.5445 -1.9191 42 1 2.3268 -8.8351 -0.6091 43 1 0.9337 -10.5616 0.4349 44 1 0.2439 -10.7392 -1.2365 45 1 -1.1598 -9.3688 0.8830 46 1 -1.3581 -8.9202 -0.8658 47 1 0.4623 -2.2291 0.9817 48 1 2.0526 -2.5468 1.8010 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001572550504.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:03 Heat of formation + Delta-G solvation = -61.427874 kcal Electronic energy + Delta-G solvation = -26256.596018 eV Core-core repulsion = 22437.889823 eV Total energy + Delta-G solvation = -3818.706195 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.65115 -40.76810 -39.56639 -38.68078 -35.92931 -34.57948 -34.12508 -31.41448 -30.59506 -27.99021 -27.68075 -26.76843 -26.43842 -25.69008 -24.01007 -21.54246 -21.31068 -20.21708 -20.10408 -19.58008 -18.39245 -17.93516 -17.48546 -16.87535 -16.85538 -16.71459 -16.44743 -16.08060 -15.95071 -15.58094 -15.22981 -14.74607 -14.55145 -14.51592 -14.21719 -13.88476 -13.71229 -13.38795 -13.26911 -13.24595 -13.18155 -13.10518 -12.85849 -12.76106 -12.68023 -12.43595 -12.25219 -12.12966 -11.87068 -11.70520 -11.48921 -11.22383 -11.12167 -11.04226 -10.88771 -10.68159 -10.26224 -10.03076 -9.62939 -8.67390 -8.33744 -6.12644 1.25913 1.44662 1.46364 1.55094 1.56084 1.70237 2.01938 2.28016 2.37140 3.00390 3.25374 3.38391 3.56661 3.65673 3.73975 3.77939 3.83575 3.85300 3.91343 4.02383 4.12943 4.21184 4.31112 4.47264 4.49570 4.56944 4.63279 4.65633 4.67345 4.71272 4.77343 4.81843 4.89938 4.93923 4.95808 4.98985 5.04692 5.11201 5.15772 5.20056 5.41793 5.42646 5.53441 5.62545 5.67010 6.19943 6.28759 6.63564 7.07188 7.14503 7.34652 8.75247 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.044687 B = 0.001567 C = 0.001533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.427646 B =17867.803912 C =18262.398510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.597 5.597 3 C 0.529 3.471 4 O -0.569 6.569 5 C -0.122 4.122 6 S -0.158 6.158 7 C -0.546 4.546 8 H 0.084 0.916 9 C 0.014 3.986 10 N -0.912 5.912 11 Si 0.999 3.001 12 H -0.262 1.262 13 H -0.280 1.280 14 H -0.260 1.260 15 C 0.112 3.888 16 C -0.140 4.140 17 C 0.133 3.867 18 N -0.705 5.705 19 C 0.508 3.492 20 O -0.587 6.587 21 C -0.124 4.124 22 C -0.102 4.102 23 C -0.141 4.141 24 C -0.145 4.145 25 C -0.126 4.126 26 C -0.147 4.147 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.106 0.894 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.271 0.729 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.118 0.882 36 H 0.095 0.905 37 H 0.419 0.581 38 H 0.121 0.879 39 H 0.118 0.882 40 H 0.072 0.928 41 H 0.088 0.912 42 H 0.044 0.956 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.100 0.900 47 H 0.115 0.885 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.576 -31.066 -3.509 35.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.329 5.329 3 C 0.317 3.683 4 O -0.447 6.447 5 C -0.273 4.273 6 S 0.070 5.930 7 C -0.694 4.694 8 H 0.102 0.898 9 C -0.191 4.191 10 N -0.548 5.548 11 Si 0.820 3.180 12 H -0.186 1.186 13 H -0.205 1.205 14 H -0.185 1.185 15 C 0.007 3.993 16 C -0.179 4.179 17 C 0.026 3.974 18 N -0.358 5.358 19 C 0.296 3.704 20 O -0.467 6.467 21 C -0.163 4.163 22 C -0.121 4.121 23 C -0.179 4.179 24 C -0.182 4.182 25 C -0.163 4.163 26 C -0.186 4.186 27 H 0.088 0.912 28 H 0.097 0.903 29 H 0.124 0.876 30 H 0.129 0.871 31 H 0.125 0.875 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.093 0.907 35 H 0.136 0.864 36 H 0.113 0.887 37 H 0.257 0.743 38 H 0.139 0.861 39 H 0.136 0.864 40 H 0.091 0.909 41 H 0.107 0.893 42 H 0.063 0.937 43 H 0.091 0.909 44 H 0.095 0.905 45 H 0.089 0.911 46 H 0.118 0.882 47 H 0.133 0.867 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.963 -31.200 -3.109 34.323 hybrid contribution -1.308 1.314 0.076 1.855 sum -15.271 -29.886 -3.034 33.699 Atomic orbital electron populations 1.22121 0.76855 1.05089 1.03456 1.47744 1.08316 1.03968 1.72890 1.20233 0.87303 0.85657 0.75121 1.90679 1.15911 1.87539 1.50617 1.23377 1.02633 0.94808 1.06473 1.85640 1.12864 0.97495 1.97047 1.23165 0.94631 0.92575 1.58992 0.89765 1.26139 0.97573 1.01713 0.93689 1.70186 1.14202 1.22502 1.47953 0.85001 0.77592 0.75820 0.79555 1.18630 1.20523 1.18489 1.22365 0.97182 0.81347 0.98399 1.23760 1.04498 0.92903 0.96779 1.21962 0.92920 0.86772 0.95744 1.45845 1.21857 1.07887 1.60162 1.21445 0.88339 0.83585 0.76989 1.90705 1.31905 1.80657 1.43454 1.21759 0.97440 0.92268 1.04873 1.22304 0.97823 0.92649 0.99298 1.23024 0.98311 0.97067 0.99494 1.22843 0.97554 0.96397 1.01404 1.22948 0.96016 0.94767 1.02584 1.23876 1.03025 0.93550 0.98158 0.91180 0.90331 0.87561 0.87087 0.87489 0.92031 0.89132 0.90738 0.86428 0.88732 0.74326 0.86136 0.86355 0.90936 0.89323 0.93744 0.90884 0.90531 0.91105 0.88171 0.86689 0.91670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.98 8.84 127.77 1.13 2.11 16 2 N -0.60 -14.99 3.08 -819.64 -2.53 -17.51 16 3 C 0.53 19.83 7.69 87.66 0.67 20.50 16 4 O -0.57 -27.02 15.35 -3.05 -0.05 -27.07 16 5 C -0.12 -4.80 4.71 71.24 0.34 -4.47 16 6 S -0.16 -8.80 20.57 -56.49 -1.16 -9.97 16 7 C -0.55 -30.99 9.50 67.95 0.65 -30.35 16 8 H 0.08 4.39 7.80 -2.91 -0.02 4.36 16 9 C 0.01 0.77 5.49 84.86 0.47 1.24 16 10 N -0.91 -56.15 13.22 21.65 0.29 -55.87 16 11 Si 1.00 43.15 29.55 68.60 2.03 45.18 16 12 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 13 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 14 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 15 C 0.11 2.50 4.20 45.52 0.19 2.69 16 16 C -0.14 -2.15 7.37 31.12 0.23 -1.92 16 17 C 0.13 2.08 4.24 45.52 0.19 2.27 16 18 N -0.71 -7.47 5.35 -440.03 -2.36 -9.82 16 19 C 0.51 7.73 7.83 87.66 0.69 8.41 16 20 O -0.59 -15.16 15.39 -3.04 -0.05 -15.21 16 21 C -0.12 -0.92 5.52 29.85 0.16 -0.76 16 22 C -0.10 -1.19 3.11 -10.27 -0.03 -1.22 16 23 C -0.14 -1.79 7.65 31.18 0.24 -1.55 16 24 C -0.14 -1.40 8.09 31.18 0.25 -1.15 16 25 C -0.13 -0.92 7.65 31.12 0.24 -0.68 16 26 C -0.15 -2.43 7.30 31.12 0.23 -2.20 16 27 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.08 1.21 6.44 -2.38 -0.02 1.19 16 29 H 0.11 0.77 6.34 -2.39 -0.02 0.76 16 30 H 0.11 3.87 7.40 -2.40 -0.02 3.86 16 31 H 0.11 3.82 8.11 -2.40 -0.02 3.80 16 32 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 33 H 0.09 2.66 7.24 -2.39 -0.02 2.65 16 34 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.12 1.16 6.90 -2.39 -0.02 1.14 16 36 H 0.09 2.01 7.47 -2.39 -0.02 1.99 16 37 H 0.42 1.32 8.73 -92.71 -0.81 0.51 16 38 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 39 H 0.12 0.35 7.87 -2.39 -0.02 0.33 16 40 H 0.07 1.24 7.73 -2.38 -0.02 1.22 16 41 H 0.09 0.90 7.92 -2.39 -0.02 0.88 16 42 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 46 H 0.10 0.38 8.10 -2.39 -0.02 0.36 16 47 H 0.11 1.35 6.72 -2.39 -0.02 1.33 16 48 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -84.92 401.24 1.97 -82.95 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 0.15 Total: 14.39 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: 5.64 Total: -7.07 kcal Atomic # 7 Polarization: -78.61 SS G_CDS: -4.60 Total: -83.21 kcal Atomic # 8 Polarization: -42.18 SS G_CDS: -0.09 Total: -42.28 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 16 Polarization: -8.80 SS G_CDS: -1.16 Total: -9.97 kcal Total: -84.92 1.97 -82.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001572550504.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.522 kcal (2) G-P(sol) polarization free energy of solvation -84.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds