Wall clock time and date at job start Sat Apr 11 2020 06:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 C 1.34774 * 120.00261 * 270.00136 * 3 2 1 5 5 O 1.21270 * 120.00172 * 180.02562 * 4 3 2 6 6 C 1.50706 * 119.99638 * 359.97438 * 4 3 2 7 7 S 1.81000 * 109.46673 * 180.02562 * 6 4 3 8 8 C 1.76203 * 99.99740 * 179.97438 * 7 6 4 9 9 H 1.08006 * 119.99908 * 359.97438 * 8 7 6 10 10 C 1.38802 * 119.99865 * 180.02562 * 8 7 6 11 11 N 1.31635 * 119.99894 * 179.97438 * 10 8 7 12 12 Si 1.86793 * 119.99992 * 359.97438 * 10 8 7 13 13 H 1.48497 * 109.47232 * 90.00193 * 12 10 8 14 14 H 1.48505 * 109.46958 * 209.99906 * 12 10 8 15 15 H 1.48497 * 109.47249 * 329.99761 * 12 10 8 16 16 C 1.46496 * 119.99619 * 89.99960 * 3 2 1 17 17 H 1.09003 * 109.47144 * 180.02562 * 16 3 2 18 18 C 1.53006 * 109.47422 * 60.00044 * 16 3 2 19 19 C 1.53001 * 109.47307 * 299.99864 * 16 3 2 20 20 N 1.46492 * 109.47206 * 305.00087 * 19 16 3 21 21 C 1.34780 * 120.00189 * 180.02562 * 20 19 16 22 22 O 1.21289 * 119.99830 * 359.97438 * 21 20 19 23 23 C 1.50702 * 120.00095 * 180.02562 * 21 20 19 24 24 H 1.08998 * 115.54742 * 34.41643 * 23 21 20 25 25 C 1.52995 * 117.49652 * 248.74148 * 23 21 20 26 26 C 1.52990 * 117.49874 * 180.08551 * 23 21 20 27 27 C 1.52999 * 138.58815 * 336.59543 * 26 23 21 28 28 C 1.52994 * 138.58740 * 238.38513 * 26 23 21 29 29 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 31 31 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 32 32 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 33 33 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 34 34 H 1.09004 * 109.46731 * 300.00166 * 6 4 3 35 35 H 1.08993 * 109.47109 * 60.00140 * 6 4 3 36 36 H 0.96991 * 119.99739 * 179.97438 * 11 10 8 37 37 H 1.08998 * 109.47024 * 179.97438 * 18 16 3 38 38 H 1.08995 * 109.46705 * 299.99697 * 18 16 3 39 39 H 1.09003 * 109.46709 * 59.99571 * 18 16 3 40 40 H 1.08998 * 109.47072 * 65.00252 * 19 16 3 41 41 H 1.09009 * 109.47087 * 184.99898 * 19 16 3 42 42 H 0.96999 * 120.00255 * 359.97438 * 20 19 16 43 43 H 1.09001 * 117.50438 * 0.02562 * 25 23 21 44 44 H 1.09002 * 117.49901 * 145.02070 * 25 23 21 45 45 H 1.09007 * 117.49516 * 336.59752 * 27 26 23 46 46 H 1.08999 * 117.50125 * 121.61676 * 27 26 23 47 47 H 1.09004 * 117.49543 * 238.37738 * 28 26 23 48 48 H 1.08999 * 117.50532 * 23.37606 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2430 2.0166 -1.1671 5 8 2.6477 3.1598 -1.1671 6 6 1.9923 1.3060 -2.4723 7 16 2.3850 2.4148 -3.8480 8 6 2.0129 1.3583 -5.2082 9 1 1.6583 0.3537 -5.0304 10 6 2.1764 1.8169 -6.5080 11 7 1.8988 1.0274 -7.5242 12 14 2.7902 3.5541 -6.8153 13 1 4.2730 3.5483 -6.8952 14 1 2.2276 4.0590 -8.0936 15 1 2.3578 4.4361 -5.7017 16 6 2.2625 2.0718 1.2687 17 1 2.6193 3.0823 1.0696 18 6 3.3171 1.3068 2.0711 19 6 0.9615 2.1397 2.0710 20 7 -0.0824 2.7664 1.2564 21 6 -1.3212 2.9336 1.7605 22 8 -1.5718 2.5648 2.8885 23 6 -2.3952 3.5777 0.9222 24 1 -2.3499 3.3634 -0.1455 25 6 -2.8841 4.9646 1.3445 26 6 -3.7799 3.7410 1.5519 27 6 -4.6165 3.1064 2.6647 28 6 -5.2233 3.3154 1.2759 29 1 -0.3635 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.6229 0.4187 -2.5298 35 1 0.9445 1.0115 -2.5302 36 1 2.0127 1.3480 -8.4325 37 1 3.4990 1.8209 3.0149 38 1 2.9598 0.2965 2.2702 39 1 4.2439 1.2584 1.4995 40 1 0.6514 1.1317 2.3464 41 1 1.1215 2.7299 2.9735 42 1 0.1180 3.0617 0.3545 43 1 -2.4287 5.4114 2.2283 44 1 -3.1609 5.6628 0.5545 45 1 -4.3717 2.0856 2.9585 46 1 -4.9619 3.7570 3.4681 47 1 -5.9680 4.1037 1.1656 48 1 -5.3780 2.4325 0.6557 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001572682173.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:10 Heat of formation + Delta-G solvation = -11.931603 kcal Electronic energy + Delta-G solvation = -27922.325947 eV Core-core repulsion = 24105.766072 eV Total energy + Delta-G solvation = -3816.559875 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.56115 -39.73024 -37.78451 -36.68476 -34.49733 -33.02034 -32.48673 -32.47687 -30.16164 -28.84065 -27.06474 -25.65890 -23.91676 -23.44015 -22.60417 -21.81205 -20.65673 -19.49904 -19.00006 -17.83222 -17.32645 -17.18035 -16.50188 -15.72997 -15.45538 -15.26793 -15.16112 -14.98227 -14.90254 -14.32331 -14.14707 -13.83637 -13.58305 -13.42157 -13.14674 -13.00070 -12.82769 -12.65383 -12.53905 -12.20644 -12.15100 -11.90600 -11.79227 -11.69058 -11.30857 -11.10368 -11.04104 -11.00766 -10.62956 -10.45853 -10.35537 -10.22728 -9.90097 -9.87495 -9.57858 -9.20446 -9.04643 -8.78048 -8.54642 -6.97292 -6.33032 -4.05346 2.34308 2.59576 2.79844 2.86984 3.11625 3.29470 3.45956 3.48680 3.53231 3.60621 4.05201 4.28461 4.37674 4.51233 4.56853 4.62381 4.77206 4.83691 4.88579 4.96809 5.05901 5.10035 5.17692 5.19805 5.23798 5.30319 5.33842 5.37213 5.40888 5.42710 5.46659 5.48361 5.64265 5.68575 5.70071 5.72174 5.77184 5.82307 5.89232 5.94267 5.94820 6.17653 6.24586 6.52279 7.32185 7.36383 7.89984 8.09150 8.31280 8.37495 9.13070 10.76235 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010512 B = 0.003192 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.917366 B = 8770.156592 C =10275.742154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.104 3.896 3 N -0.613 5.613 4 C 0.532 3.468 5 O -0.518 6.518 6 C -0.122 4.122 7 S -0.143 6.143 8 C -0.521 4.521 9 H 0.088 0.912 10 C 0.096 3.904 11 N -0.880 5.880 12 Si 0.857 3.143 13 H -0.267 1.267 14 H -0.274 1.274 15 H -0.235 1.235 16 C 0.124 3.876 17 H 0.109 0.891 18 C -0.158 4.158 19 C 0.111 3.889 20 N -0.719 5.719 21 C 0.544 3.456 22 O -0.540 6.540 23 C -0.144 4.144 24 H 0.126 0.874 25 C -0.099 4.099 26 C -0.199 4.199 27 C -0.113 4.113 28 C -0.130 4.130 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.271 0.729 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.406 0.594 43 H 0.100 0.900 44 H 0.108 0.892 45 H 0.099 0.901 46 H 0.095 0.905 47 H 0.099 0.901 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.317 1.131 21.222 22.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.019 4.019 3 N -0.349 5.349 4 C 0.320 3.680 5 O -0.392 6.392 6 C -0.272 4.272 7 S 0.084 5.916 8 C -0.669 4.669 9 H 0.106 0.894 10 C -0.113 4.113 11 N -0.516 5.516 12 Si 0.681 3.319 13 H -0.192 1.192 14 H -0.199 1.199 15 H -0.159 1.159 16 C 0.020 3.980 17 H 0.127 0.873 18 C -0.216 4.216 19 C -0.013 4.013 20 N -0.371 5.371 21 C 0.330 3.670 22 O -0.417 6.417 23 C -0.165 4.165 24 H 0.144 0.856 25 C -0.136 4.136 26 C -0.200 4.200 27 C -0.150 4.150 28 C -0.167 4.167 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.241 0.759 43 H 0.118 0.882 44 H 0.126 0.874 45 H 0.117 0.883 46 H 0.114 0.886 47 H 0.117 0.883 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.882 2.517 21.835 23.031 hybrid contribution -0.023 -0.799 -1.032 1.305 sum -6.904 1.718 20.803 21.986 Atomic orbital electron populations 1.22419 0.95810 1.02444 1.03144 1.21555 0.94559 0.82323 1.03454 1.48071 1.67311 1.14472 1.05052 1.20381 0.76379 0.86517 0.84731 1.90699 1.44213 1.17549 1.86774 1.23346 1.05412 1.03363 0.95100 1.84780 1.88194 1.21111 0.97539 1.22295 1.51816 1.01886 0.90867 0.89423 1.24713 0.93761 0.97920 0.94883 1.69936 1.46543 1.36246 0.98909 0.86738 0.80278 0.85010 0.79828 1.19226 1.19939 1.15943 1.21293 0.94000 0.99116 0.83633 0.87303 1.22058 0.98782 1.00600 1.00182 1.21776 0.86786 0.98795 0.93976 1.45927 1.10114 1.62077 1.18995 1.19654 0.82396 0.78305 0.86642 1.90681 1.81481 1.50294 1.19241 1.21984 0.92798 1.01811 0.99890 0.85644 1.22668 0.99229 0.88905 1.02835 1.21140 0.89535 1.02593 1.06736 1.22585 0.99547 1.01573 0.91317 1.22772 0.91890 1.02596 0.99407 0.91684 0.91579 0.92121 0.89776 0.90319 0.88562 0.88483 0.91910 0.91143 0.91951 0.91362 0.90913 0.90631 0.75877 0.88153 0.87414 0.88297 0.88637 0.88313 0.88447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.76 9.65 37.16 0.36 -1.41 16 2 C 0.10 1.01 5.38 -4.04 -0.02 0.98 16 3 N -0.61 -7.19 1.88 -166.10 -0.31 -7.50 16 4 C 0.53 8.61 7.40 -10.98 -0.08 8.53 16 5 O -0.52 -10.09 15.19 5.57 0.08 -10.00 16 6 C -0.12 -2.22 4.71 36.01 0.17 -2.05 16 7 S -0.14 -3.46 18.55 -107.50 -1.99 -5.45 16 8 C -0.52 -14.58 10.04 30.94 0.31 -14.27 16 9 H 0.09 2.57 8.03 -52.48 -0.42 2.14 16 10 C 0.10 2.75 5.50 -17.43 -0.10 2.65 16 11 N -0.88 -26.11 13.97 55.49 0.78 -25.34 16 12 Si 0.86 21.32 27.74 -169.99 -4.71 16.60 16 13 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 14 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.24 -5.81 6.74 56.52 0.38 -5.43 16 16 C 0.12 1.25 2.80 -67.93 -0.19 1.06 16 17 H 0.11 1.31 6.90 -51.93 -0.36 0.96 16 18 C -0.16 -1.26 9.17 37.16 0.34 -0.92 16 19 C 0.11 1.10 4.30 -4.05 -0.02 1.08 16 20 N -0.72 -7.93 3.99 -60.29 -0.24 -8.17 16 21 C 0.54 6.66 7.35 -10.98 -0.08 6.58 16 22 O -0.54 -8.07 16.24 5.55 0.09 -7.98 16 23 C -0.14 -1.55 6.19 -91.78 -0.57 -2.11 16 24 H 0.13 1.26 8.14 -51.93 -0.42 0.83 16 25 C -0.10 -0.94 10.24 -26.70 -0.27 -1.21 16 26 C -0.20 -2.05 5.06 -154.49 -0.78 -2.83 16 27 C -0.11 -1.09 10.16 -26.73 -0.27 -1.36 16 28 C -0.13 -1.10 10.53 -26.73 -0.28 -1.38 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.69 4.50 -51.93 -0.23 0.45 16 31 H 0.06 0.68 7.22 -51.93 -0.38 0.30 16 32 H 0.08 0.85 6.44 -51.93 -0.33 0.51 16 33 H 0.08 0.61 6.43 -51.93 -0.33 0.27 16 34 H 0.10 1.67 7.40 -51.91 -0.38 1.28 16 35 H 0.10 1.66 7.19 -51.92 -0.37 1.29 16 36 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.43 6.66 -51.93 -0.35 0.09 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.71 6.62 -51.93 -0.34 0.37 16 41 H 0.08 0.73 8.14 -51.92 -0.42 0.31 16 42 H 0.41 4.74 7.87 -40.82 -0.32 4.42 16 43 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 400.13 15.07 6.03 6.03 Total: -1.00 -33.55 400.13 -9.40 -42.95 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -7.63 Total: 5.51 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -1.48 Total: -6.65 kcal Atomic # 7 Polarization: -41.23 SS G_CDS: 0.22 Total: -41.01 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: 0.17 Total: -17.98 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.71 Total: 16.60 kcal Atomic # 16 Polarization: -3.46 SS G_CDS: -1.99 Total: -5.45 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.55 -9.40 -42.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001572682173.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.020 kcal (2) G-P(sol) polarization free energy of solvation -33.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds