Wall clock time and date at job start Sat Apr 11 2020 06:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 C 1.34774 * 120.00261 * 270.00136 * 3 2 1 5 5 O 1.21270 * 120.00172 * 180.02562 * 4 3 2 6 6 C 1.50706 * 119.99638 * 359.97438 * 4 3 2 7 7 S 1.81000 * 109.46673 * 180.02562 * 6 4 3 8 8 C 1.76203 * 99.99740 * 179.97438 * 7 6 4 9 9 H 1.08006 * 119.99908 * 359.97438 * 8 7 6 10 10 C 1.38802 * 119.99865 * 180.02562 * 8 7 6 11 11 N 1.31635 * 119.99894 * 179.97438 * 10 8 7 12 12 Si 1.86793 * 119.99992 * 359.97438 * 10 8 7 13 13 H 1.48497 * 109.47232 * 90.00193 * 12 10 8 14 14 H 1.48505 * 109.46958 * 209.99906 * 12 10 8 15 15 H 1.48497 * 109.47249 * 329.99761 * 12 10 8 16 16 C 1.46496 * 119.99619 * 89.99960 * 3 2 1 17 17 H 1.09003 * 109.47144 * 180.02562 * 16 3 2 18 18 C 1.53006 * 109.47422 * 60.00044 * 16 3 2 19 19 C 1.53001 * 109.47307 * 299.99864 * 16 3 2 20 20 N 1.46492 * 109.47206 * 305.00087 * 19 16 3 21 21 C 1.34780 * 120.00189 * 180.02562 * 20 19 16 22 22 O 1.21289 * 119.99830 * 359.97438 * 21 20 19 23 23 C 1.50702 * 120.00095 * 180.02562 * 21 20 19 24 24 H 1.08998 * 115.54742 * 34.41643 * 23 21 20 25 25 C 1.52995 * 117.49652 * 248.74148 * 23 21 20 26 26 C 1.52990 * 117.49874 * 180.08551 * 23 21 20 27 27 C 1.52999 * 138.58815 * 336.59543 * 26 23 21 28 28 C 1.52994 * 138.58740 * 238.38513 * 26 23 21 29 29 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 31 31 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 32 32 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 33 33 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 34 34 H 1.09004 * 109.46731 * 300.00166 * 6 4 3 35 35 H 1.08993 * 109.47109 * 60.00140 * 6 4 3 36 36 H 0.96991 * 119.99739 * 179.97438 * 11 10 8 37 37 H 1.08998 * 109.47024 * 179.97438 * 18 16 3 38 38 H 1.08995 * 109.46705 * 299.99697 * 18 16 3 39 39 H 1.09003 * 109.46709 * 59.99571 * 18 16 3 40 40 H 1.08998 * 109.47072 * 65.00252 * 19 16 3 41 41 H 1.09009 * 109.47087 * 184.99898 * 19 16 3 42 42 H 0.96999 * 120.00255 * 359.97438 * 20 19 16 43 43 H 1.09001 * 117.50438 * 0.02562 * 25 23 21 44 44 H 1.09002 * 117.49901 * 145.02070 * 25 23 21 45 45 H 1.09007 * 117.49516 * 336.59752 * 27 26 23 46 46 H 1.08999 * 117.50125 * 121.61676 * 27 26 23 47 47 H 1.09004 * 117.49543 * 238.37738 * 28 26 23 48 48 H 1.08999 * 117.50532 * 23.37606 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2430 2.0166 -1.1671 5 8 2.6477 3.1598 -1.1671 6 6 1.9923 1.3060 -2.4723 7 16 2.3850 2.4148 -3.8480 8 6 2.0129 1.3583 -5.2082 9 1 1.6583 0.3537 -5.0304 10 6 2.1764 1.8169 -6.5080 11 7 1.8988 1.0274 -7.5242 12 14 2.7902 3.5541 -6.8153 13 1 4.2730 3.5483 -6.8952 14 1 2.2276 4.0590 -8.0936 15 1 2.3578 4.4361 -5.7017 16 6 2.2625 2.0718 1.2687 17 1 2.6193 3.0823 1.0696 18 6 3.3171 1.3068 2.0711 19 6 0.9615 2.1397 2.0710 20 7 -0.0824 2.7664 1.2564 21 6 -1.3212 2.9336 1.7605 22 8 -1.5718 2.5648 2.8885 23 6 -2.3952 3.5777 0.9222 24 1 -2.3499 3.3634 -0.1455 25 6 -2.8841 4.9646 1.3445 26 6 -3.7799 3.7410 1.5519 27 6 -4.6165 3.1064 2.6647 28 6 -5.2233 3.3154 1.2759 29 1 -0.3635 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.6229 0.4187 -2.5298 35 1 0.9445 1.0115 -2.5302 36 1 2.0127 1.3480 -8.4325 37 1 3.4990 1.8209 3.0149 38 1 2.9598 0.2965 2.2702 39 1 4.2439 1.2584 1.4995 40 1 0.6514 1.1317 2.3464 41 1 1.1215 2.7299 2.9735 42 1 0.1180 3.0617 0.3545 43 1 -2.4287 5.4114 2.2283 44 1 -3.1609 5.6628 0.5545 45 1 -4.3717 2.0856 2.9585 46 1 -4.9619 3.7570 3.4681 47 1 -5.9680 4.1037 1.1656 48 1 -5.3780 2.4325 0.6557 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001572682173.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:07 Heat of formation + Delta-G solvation = -31.661476 kcal Electronic energy + Delta-G solvation = -27923.181498 eV Core-core repulsion = 24105.766072 eV Total energy + Delta-G solvation = -3817.415427 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.58646 -40.75939 -38.65274 -37.76484 -35.48810 -34.66549 -33.85265 -33.29430 -31.25946 -30.09204 -27.85750 -27.84221 -24.74201 -24.33072 -23.29712 -22.85368 -21.51132 -20.50457 -20.00091 -19.57728 -18.51247 -18.17945 -17.48579 -17.10877 -16.75014 -16.55099 -16.34289 -15.91528 -15.85745 -15.61807 -15.22460 -15.00535 -14.84251 -14.65261 -14.38450 -14.10708 -13.84802 -13.52719 -13.47188 -13.34153 -13.24200 -13.02506 -13.00498 -12.73309 -12.67439 -12.51925 -12.37519 -11.92535 -11.88162 -11.80067 -11.23111 -11.16586 -11.13552 -10.97153 -10.91678 -10.78393 -10.51499 -10.13412 -9.82558 -8.98537 -8.51046 -6.21470 0.98084 1.31893 1.42308 1.45871 1.49749 1.53667 1.94450 2.10112 2.25037 2.68581 2.70711 2.84523 2.87551 3.30401 3.45769 3.67626 3.76613 3.83437 3.97630 4.04793 4.07638 4.13607 4.19660 4.37691 4.44573 4.44777 4.49794 4.53027 4.57725 4.67208 4.69013 4.73573 4.75286 4.77558 4.88950 4.92678 4.97672 4.99889 5.03701 5.22077 5.25449 5.33396 5.37751 5.57409 5.71199 6.12154 6.20777 6.40921 6.94325 7.06335 7.14692 8.61455 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010512 B = 0.003192 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.917366 B = 8770.156592 C =10275.742154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.099 3.901 3 N -0.596 5.596 4 C 0.537 3.463 5 O -0.555 6.555 6 C -0.108 4.108 7 S -0.170 6.170 8 C -0.527 4.527 9 H 0.061 0.939 10 C 0.046 3.954 11 N -0.918 5.918 12 Si 0.914 3.086 13 H -0.264 1.264 14 H -0.261 1.261 15 H -0.234 1.234 16 C 0.127 3.873 17 H 0.090 0.910 18 C -0.152 4.152 19 C 0.115 3.885 20 N -0.715 5.715 21 C 0.544 3.456 22 O -0.570 6.570 23 C -0.158 4.158 24 H 0.130 0.870 25 C -0.090 4.090 26 C -0.220 4.220 27 C -0.121 4.121 28 C -0.115 4.115 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.043 0.957 32 H 0.084 0.916 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.276 0.724 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.059 0.941 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.403 0.597 43 H 0.097 0.903 44 H 0.125 0.875 45 H 0.085 0.915 46 H 0.104 0.896 47 H 0.117 0.883 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.483 1.363 22.744 23.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.023 4.023 3 N -0.330 5.330 4 C 0.325 3.675 5 O -0.433 6.433 6 C -0.258 4.258 7 S 0.057 5.943 8 C -0.675 4.675 9 H 0.079 0.921 10 C -0.160 4.160 11 N -0.556 5.556 12 Si 0.736 3.264 13 H -0.188 1.188 14 H -0.185 1.185 15 H -0.158 1.158 16 C 0.024 3.976 17 H 0.108 0.892 18 C -0.210 4.210 19 C -0.009 4.009 20 N -0.366 5.366 21 C 0.331 3.669 22 O -0.449 6.449 23 C -0.178 4.178 24 H 0.148 0.852 25 C -0.127 4.127 26 C -0.221 4.221 27 C -0.158 4.158 28 C -0.151 4.151 29 H 0.098 0.902 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.102 0.898 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.086 0.914 37 H 0.107 0.893 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.238 0.762 43 H 0.115 0.885 44 H 0.143 0.857 45 H 0.104 0.896 46 H 0.123 0.877 47 H 0.135 0.865 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.049 2.715 23.381 24.571 hybrid contribution -0.011 -1.003 -1.361 1.691 sum -7.060 1.712 22.020 23.187 Atomic orbital electron populations 1.22350 0.95682 1.03125 1.02040 1.21802 0.94549 0.80996 1.04990 1.48016 1.65607 1.15088 1.04318 1.19955 0.76514 0.85917 0.85134 1.90692 1.46391 1.18972 1.87236 1.23316 1.06295 1.02371 0.93866 1.84656 1.88438 1.22576 0.98678 1.22454 1.51083 1.01395 0.92563 0.92121 1.25559 0.94008 1.01600 0.94792 1.70019 1.47889 1.38166 0.99548 0.85876 0.79849 0.80581 0.80124 1.18838 1.18518 1.15794 1.21396 0.94878 0.98491 0.82861 0.89151 1.22036 0.97333 1.01356 1.00293 1.21816 0.86100 0.99159 0.93810 1.45961 1.10140 1.61665 1.18833 1.19896 0.82824 0.77824 0.86331 1.90661 1.82002 1.51767 1.20514 1.22023 0.92936 1.03022 0.99868 0.85238 1.22735 0.98332 0.88533 1.03076 1.21381 0.90102 1.02978 1.07628 1.22613 0.99995 1.01035 0.92169 1.22871 0.91017 1.03021 0.98198 0.90168 0.92056 0.93772 0.89802 0.87302 0.87424 0.87359 0.91415 0.89349 0.90264 0.92235 0.90204 0.90093 0.76188 0.88468 0.85700 0.89616 0.87722 0.86502 0.88141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.07 9.65 71.98 0.69 -2.38 16 2 C 0.10 1.66 5.38 86.38 0.47 2.12 16 3 N -0.60 -12.97 1.88 -797.82 -1.50 -14.47 16 4 C 0.54 16.90 7.40 87.66 0.65 17.55 16 5 O -0.55 -21.43 15.19 -3.00 -0.05 -21.47 16 6 C -0.11 -3.86 4.71 71.24 0.34 -3.52 16 7 S -0.17 -8.24 18.55 -56.49 -1.05 -9.29 16 8 C -0.53 -29.93 10.04 67.96 0.68 -29.25 16 9 H 0.06 3.65 8.03 -2.91 -0.02 3.63 16 10 C 0.05 2.63 5.50 84.86 0.47 3.10 16 11 N -0.92 -55.19 13.97 21.65 0.30 -54.89 16 12 Si 0.91 44.04 27.74 68.60 1.90 45.95 16 13 H -0.26 -12.45 7.11 99.48 0.71 -11.74 16 14 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 15 H -0.23 -11.16 6.74 99.48 0.67 -10.49 16 16 C 0.13 2.35 2.80 44.99 0.13 2.48 16 17 H 0.09 2.10 6.90 -2.39 -0.02 2.08 16 18 C -0.15 -1.99 9.17 71.98 0.66 -1.33 16 19 C 0.12 2.07 4.30 86.38 0.37 2.44 16 20 N -0.72 -15.15 3.99 -463.05 -1.85 -16.99 16 21 C 0.54 13.02 7.35 87.66 0.64 13.66 16 22 O -0.57 -16.77 16.24 -3.06 -0.05 -16.82 16 23 C -0.16 -3.29 6.19 -11.54 -0.07 -3.36 16 24 H 0.13 2.53 8.14 -2.39 -0.02 2.51 16 25 C -0.09 -1.59 10.24 30.61 0.31 -1.28 16 26 C -0.22 -4.31 5.06 -52.17 -0.26 -4.58 16 27 C -0.12 -2.24 10.16 30.59 0.31 -1.93 16 28 C -0.11 -1.76 10.53 30.59 0.32 -1.43 16 29 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.06 1.16 4.50 -2.39 -0.01 1.15 16 31 H 0.04 0.93 7.22 -2.39 -0.02 0.91 16 32 H 0.08 1.48 6.44 -2.39 -0.02 1.46 16 33 H 0.11 1.26 6.43 -2.39 -0.02 1.24 16 34 H 0.11 3.62 7.40 -2.39 -0.02 3.60 16 35 H 0.11 3.64 7.19 -2.40 -0.02 3.62 16 36 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 37 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.08 0.79 6.66 -2.39 -0.02 0.77 16 39 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.08 1.37 6.62 -2.39 -0.02 1.35 16 41 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 42 H 0.40 9.18 7.87 -92.71 -0.73 8.45 16 43 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 46 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 48 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -73.22 400.13 3.62 -69.59 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: 0.20 Total: 26.10 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: 5.71 Total: -7.70 kcal Atomic # 7 Polarization: -83.30 SS G_CDS: -3.05 Total: -86.35 kcal Atomic # 8 Polarization: -38.20 SS G_CDS: -0.10 Total: -38.30 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 1.90 Total: 45.95 kcal Atomic # 16 Polarization: -8.24 SS G_CDS: -1.05 Total: -9.29 kcal Total: -73.22 3.62 -69.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001572682173.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.931 kcal (2) G-P(sol) polarization free energy of solvation -73.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds