Wall clock time and date at job start Sat Apr 11 2020 06:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 119.99760 * 2 1 4 4 C 1.53009 * 109.46725 * 90.00285 * 3 2 1 5 5 C 1.53004 * 109.46963 * 179.97438 * 4 3 2 6 6 N 1.46494 * 109.47060 * 180.02562 * 5 4 3 7 7 C 1.34774 * 120.00030 * 180.02562 * 6 5 4 8 8 O 1.21279 * 120.00108 * 359.97438 * 7 6 5 9 9 C 1.50705 * 119.99876 * 179.97438 * 7 6 5 10 10 C 1.53896 * 113.58755 * 179.97438 * 9 7 6 11 11 C 1.53255 * 86.88077 * 220.35135 * 10 9 7 12 12 C 1.52463 * 128.58200 * 165.11323 * 11 10 9 13 13 C 1.52594 * 128.57898 * 245.01071 * 11 10 9 14 14 C 1.53253 * 87.69411 * 25.08346 * 11 10 9 15 15 C 1.34777 * 120.00097 * 180.02562 * 2 1 3 16 16 O 1.21280 * 119.99955 * 180.02562 * 15 2 1 17 17 C 1.50698 * 120.00198 * 359.97438 * 15 2 1 18 18 S 1.81001 * 109.47237 * 180.02562 * 17 15 2 19 19 C 1.76207 * 99.99840 * 180.02562 * 18 17 15 20 20 H 1.08006 * 119.99934 * 0.02562 * 19 18 17 21 21 C 1.38797 * 119.99823 * 180.02562 * 19 18 17 22 22 N 1.31627 * 119.99925 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99791 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47555 * 89.99975 * 23 21 19 25 25 H 1.48505 * 109.46742 * 209.99696 * 23 21 19 26 26 H 1.48495 * 109.47067 * 329.99412 * 23 21 19 27 27 H 1.09003 * 109.47091 * 89.99651 * 1 2 3 28 28 H 1.09002 * 109.47161 * 209.99380 * 1 2 3 29 29 H 1.08992 * 109.47291 * 329.99477 * 1 2 3 30 30 H 1.08994 * 109.47444 * 330.00320 * 3 2 1 31 31 H 1.09001 * 109.47523 * 210.00123 * 3 2 1 32 32 H 1.09003 * 109.47006 * 59.99961 * 4 3 2 33 33 H 1.08994 * 109.47187 * 299.99790 * 4 3 2 34 34 H 1.08994 * 109.47268 * 59.99997 * 5 4 3 35 35 H 1.09005 * 109.46585 * 300.00016 * 5 4 3 36 36 H 0.97008 * 120.00151 * 359.97438 * 6 5 4 37 37 H 1.08996 * 112.83080 * 311.11285 * 9 7 6 38 38 H 1.08999 * 113.64506 * 105.84746 * 10 9 7 39 39 H 1.09002 * 113.72331 * 334.85835 * 10 9 7 40 40 H 1.09002 * 117.51344 * 225.04691 * 12 11 10 41 41 H 1.08998 * 117.51392 * 10.11018 * 12 11 10 42 42 H 1.09004 * 117.53725 * 134.99153 * 13 11 10 43 43 H 1.09004 * 117.50465 * 349.86081 * 13 11 10 44 44 H 1.09000 * 113.64538 * 89.41628 * 14 11 10 45 45 H 1.09011 * 113.64293 * 220.41621 * 14 11 10 46 46 H 1.09002 * 109.47090 * 300.00428 * 17 15 2 47 47 H 1.09004 * 109.46936 * 59.99855 * 17 15 2 48 48 H 0.97002 * 120.00084 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4524 1.7103 1.4426 5 6 3.2180 3.0351 1.4427 6 7 3.4627 3.4576 2.8239 7 6 4.1252 4.6051 3.0702 8 8 4.5193 5.2876 2.1485 9 6 4.3764 5.0400 4.4911 10 6 5.1445 6.3689 4.6017 11 6 5.9187 5.7286 5.7590 12 6 7.2157 6.1968 6.4096 13 6 5.9266 6.1242 7.2327 14 6 5.5997 4.3651 5.1364 15 6 2.1389 -1.1672 -0.0005 16 8 3.3517 -1.1672 -0.0001 17 6 1.3855 -2.4723 -0.0005 18 16 2.5617 -3.8480 -0.0005 19 6 1.4416 -5.2083 -0.0013 20 1 0.3763 -5.0305 -0.0020 21 6 1.9284 -6.5081 -0.0010 22 7 3.2267 -6.7246 -0.0006 23 14 0.7409 -7.9500 -0.0025 24 1 0.4277 -8.3320 -1.4029 25 1 1.3616 -9.1031 0.6980 26 1 -0.5104 -7.5615 0.6963 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3633 -0.8901 0.5137 29 1 -0.3633 0.8899 0.5139 30 1 1.6084 2.0284 -0.5137 31 1 3.1499 1.1385 -0.5138 32 1 3.0416 0.9506 1.9564 33 1 1.5001 1.8406 1.9564 34 1 2.6293 3.7949 0.9288 35 1 4.1704 2.9043 0.9289 36 1 3.1471 2.9118 3.5612 37 1 3.4801 5.0011 5.1100 38 1 4.5213 7.2102 4.9050 39 1 5.7630 6.5917 3.7322 40 1 7.9809 5.4455 6.6049 41 1 7.5858 7.1859 6.1399 42 1 5.8439 5.3251 7.9695 43 1 5.4485 7.0656 7.5038 44 1 6.3446 4.0287 4.4152 45 1 5.3413 3.5999 5.8685 46 1 0.7591 -2.5302 0.8897 47 1 0.7585 -2.5298 -0.8903 48 1 3.5669 -7.6330 -0.0007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001577361663.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:21 Heat of formation + Delta-G solvation = -31.610977 kcal Electronic energy + Delta-G solvation = -25832.695339 eV Core-core repulsion = 22015.282102 eV Total energy + Delta-G solvation = -3817.413237 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.77093 -39.56101 -38.74953 -36.22326 -35.00692 -34.00828 -32.44979 -32.12392 -29.25434 -27.22959 -26.19037 -25.90607 -25.46162 -23.98728 -22.85834 -21.99130 -20.45387 -19.19040 -18.77925 -17.70755 -17.47617 -16.77025 -16.45785 -16.03011 -15.78156 -15.54592 -15.45541 -15.23646 -14.82417 -14.61355 -14.23223 -13.91197 -13.37486 -13.06740 -13.02870 -12.84938 -12.65836 -12.61398 -12.50386 -12.44064 -12.21916 -11.91640 -11.90505 -11.80760 -11.79075 -11.08306 -11.04443 -11.00435 -10.78159 -10.77202 -10.72724 -10.15442 -9.89490 -9.82809 -9.40416 -9.32797 -9.08627 -8.60197 -8.25098 -6.52551 -6.23632 -3.94509 2.36050 2.76228 2.97336 3.04995 3.20642 3.24596 3.28605 3.34484 3.58667 3.91113 4.10617 4.18299 4.21903 4.38001 4.45186 4.64323 4.69142 4.82332 4.87789 4.95496 5.00250 5.09873 5.11701 5.21663 5.24405 5.26909 5.32212 5.35751 5.39121 5.42527 5.44128 5.56871 5.57610 5.61480 5.67580 5.71737 5.79319 5.86192 5.89804 5.92009 5.98775 6.10380 6.17740 6.59813 7.22560 7.47889 7.57480 7.96717 8.33011 8.51655 9.21631 10.83766 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016963 B = 0.001662 C = 0.001565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.211711 B =16844.406356 C =17888.157796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.626 5.626 3 C 0.122 3.878 4 C -0.148 4.148 5 C 0.122 3.878 6 N -0.728 5.728 7 C 0.522 3.478 8 O -0.540 6.540 9 C -0.133 4.133 10 C -0.075 4.075 11 C -0.166 4.166 12 C -0.165 4.165 13 C -0.151 4.151 14 C -0.082 4.082 15 C 0.532 3.468 16 O -0.514 6.514 17 C -0.151 4.151 18 S -0.062 6.062 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.402 0.598 37 H 0.114 0.886 38 H 0.072 0.928 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.096 0.904 44 H 0.091 0.909 45 H 0.077 0.923 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.354 25.957 11.165 28.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.362 5.362 3 C -0.002 4.002 4 C -0.187 4.187 5 C -0.003 4.003 6 N -0.379 5.379 7 C 0.308 3.692 8 O -0.417 6.417 9 C -0.154 4.154 10 C -0.112 4.112 11 C -0.166 4.166 12 C -0.202 4.202 13 C -0.188 4.188 14 C -0.119 4.119 15 C 0.320 3.680 16 O -0.388 6.388 17 C -0.301 4.301 18 S 0.165 5.835 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 H 0.074 0.926 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.236 0.764 37 H 0.132 0.868 38 H 0.090 0.910 39 H 0.118 0.882 40 H 0.114 0.886 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.109 0.891 45 H 0.096 0.904 46 H 0.107 0.893 47 H 0.107 0.893 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.136 26.300 10.466 28.306 hybrid contribution -2.526 -1.271 0.399 2.856 sum -2.662 25.028 10.865 27.415 Atomic orbital electron populations 1.21770 0.79620 1.03075 1.01846 1.47863 1.06847 1.05608 1.75853 1.21221 0.98454 0.85015 0.95511 1.22180 1.00810 0.96570 0.99138 1.21277 1.00598 0.95540 0.82838 1.46038 1.58455 1.24285 1.09142 1.20489 0.77045 0.80492 0.91153 1.90698 1.50733 1.54034 1.46247 1.22631 0.99671 0.99665 0.93454 1.22375 0.97002 0.94902 0.96934 1.22174 1.01937 0.97926 0.94536 1.22810 0.90980 1.02747 1.03627 1.22823 1.01157 1.02879 0.91916 1.22411 0.95717 0.94922 0.98891 1.20376 0.87963 0.84607 0.75060 1.90699 1.13714 1.86793 1.47576 1.23562 1.04567 0.97263 1.04714 1.85405 1.08060 0.93361 1.96708 1.22859 0.94295 0.92211 1.59023 0.90946 1.24990 0.95672 0.98378 0.94519 1.70017 1.11742 1.21680 1.46798 0.86168 0.80249 0.80717 0.78369 1.20254 1.20744 1.19708 0.92650 0.90634 0.91443 0.90565 0.89449 0.90378 0.91258 0.91393 0.91061 0.76412 0.86836 0.90969 0.88227 0.88570 0.88599 0.88496 0.88549 0.89097 0.90414 0.89275 0.89255 0.92169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.77 10.24 59.85 0.61 1.38 16 2 N -0.63 -8.28 2.87 -181.57 -0.52 -8.80 16 3 C 0.12 1.34 5.41 -4.04 -0.02 1.32 16 4 C -0.15 -1.40 5.65 -26.72 -0.15 -1.55 16 5 C 0.12 1.14 5.67 -4.04 -0.02 1.12 16 6 N -0.73 -6.22 5.56 -60.30 -0.33 -6.56 16 7 C 0.52 5.29 7.36 -10.98 -0.08 5.21 16 8 O -0.54 -7.61 15.90 5.56 0.09 -7.52 16 9 C -0.13 -0.97 4.14 -90.84 -0.38 -1.35 16 10 C -0.07 -0.58 7.42 -26.13 -0.19 -0.77 16 11 C -0.17 -1.13 3.09 -154.73 -0.48 -1.61 16 12 C -0.16 -1.03 10.53 -26.94 -0.28 -1.31 16 13 C -0.15 -0.85 10.54 -26.87 -0.28 -1.13 16 14 C -0.08 -0.57 7.65 -26.14 -0.20 -0.77 16 15 C 0.53 9.80 7.69 -10.99 -0.08 9.72 16 16 O -0.51 -11.43 15.44 5.56 0.09 -11.35 16 17 C -0.15 -2.99 4.71 36.00 0.17 -2.83 16 18 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 19 C -0.54 -15.11 9.50 30.94 0.29 -14.81 16 20 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 21 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -25.97 13.22 55.49 0.73 -25.24 16 23 Si 0.92 21.19 29.55 -169.99 -5.02 16.16 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.74 6.44 -51.93 -0.33 0.41 16 29 H 0.07 0.47 8.07 -51.93 -0.42 0.05 16 30 H 0.08 0.63 8.07 -51.93 -0.42 0.21 16 31 H 0.09 1.13 7.42 -51.93 -0.39 0.75 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.40 2.53 8.47 -40.82 -0.35 2.18 16 37 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.10 0.94 7.43 -51.93 -0.39 0.55 16 40 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.09 0.73 8.09 -51.93 -0.42 0.31 16 45 H 0.08 0.45 8.14 -51.92 -0.42 0.03 16 46 H 0.09 1.63 7.40 -51.91 -0.38 1.24 16 47 H 0.09 1.66 8.11 -51.91 -0.42 1.24 16 48 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 412.86 15.07 6.22 6.22 Total: -1.00 -36.09 412.86 -10.29 -46.38 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -8.13 Total: -0.02 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: -1.20 Total: -5.40 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: -0.12 Total: -40.60 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: 0.17 Total: -18.86 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -36.09 -10.29 -46.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577361663.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.772 kcal (2) G-P(sol) polarization free energy of solvation -36.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds