Wall clock time and date at job start Sat Apr 11 2020 06:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 119.99760 * 2 1 4 4 C 1.53009 * 109.46725 * 90.00285 * 3 2 1 5 5 C 1.53004 * 109.46963 * 179.97438 * 4 3 2 6 6 N 1.46494 * 109.47060 * 180.02562 * 5 4 3 7 7 C 1.34774 * 120.00030 * 180.02562 * 6 5 4 8 8 O 1.21279 * 120.00108 * 359.97438 * 7 6 5 9 9 C 1.50705 * 119.99876 * 179.97438 * 7 6 5 10 10 C 1.53896 * 113.58755 * 179.97438 * 9 7 6 11 11 C 1.53255 * 86.88077 * 220.35135 * 10 9 7 12 12 C 1.52463 * 128.58200 * 165.11323 * 11 10 9 13 13 C 1.52594 * 128.57898 * 245.01071 * 11 10 9 14 14 C 1.53253 * 87.69411 * 25.08346 * 11 10 9 15 15 C 1.34777 * 120.00097 * 180.02562 * 2 1 3 16 16 O 1.21280 * 119.99955 * 180.02562 * 15 2 1 17 17 C 1.50698 * 120.00198 * 359.97438 * 15 2 1 18 18 S 1.81001 * 109.47237 * 180.02562 * 17 15 2 19 19 C 1.76207 * 99.99840 * 180.02562 * 18 17 15 20 20 H 1.08006 * 119.99934 * 0.02562 * 19 18 17 21 21 C 1.38797 * 119.99823 * 180.02562 * 19 18 17 22 22 N 1.31627 * 119.99925 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99791 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47555 * 89.99975 * 23 21 19 25 25 H 1.48505 * 109.46742 * 209.99696 * 23 21 19 26 26 H 1.48495 * 109.47067 * 329.99412 * 23 21 19 27 27 H 1.09003 * 109.47091 * 89.99651 * 1 2 3 28 28 H 1.09002 * 109.47161 * 209.99380 * 1 2 3 29 29 H 1.08992 * 109.47291 * 329.99477 * 1 2 3 30 30 H 1.08994 * 109.47444 * 330.00320 * 3 2 1 31 31 H 1.09001 * 109.47523 * 210.00123 * 3 2 1 32 32 H 1.09003 * 109.47006 * 59.99961 * 4 3 2 33 33 H 1.08994 * 109.47187 * 299.99790 * 4 3 2 34 34 H 1.08994 * 109.47268 * 59.99997 * 5 4 3 35 35 H 1.09005 * 109.46585 * 300.00016 * 5 4 3 36 36 H 0.97008 * 120.00151 * 359.97438 * 6 5 4 37 37 H 1.08996 * 112.83080 * 311.11285 * 9 7 6 38 38 H 1.08999 * 113.64506 * 105.84746 * 10 9 7 39 39 H 1.09002 * 113.72331 * 334.85835 * 10 9 7 40 40 H 1.09002 * 117.51344 * 225.04691 * 12 11 10 41 41 H 1.08998 * 117.51392 * 10.11018 * 12 11 10 42 42 H 1.09004 * 117.53725 * 134.99153 * 13 11 10 43 43 H 1.09004 * 117.50465 * 349.86081 * 13 11 10 44 44 H 1.09000 * 113.64538 * 89.41628 * 14 11 10 45 45 H 1.09011 * 113.64293 * 220.41621 * 14 11 10 46 46 H 1.09002 * 109.47090 * 300.00428 * 17 15 2 47 47 H 1.09004 * 109.46936 * 59.99855 * 17 15 2 48 48 H 0.97002 * 120.00084 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4524 1.7103 1.4426 5 6 3.2180 3.0351 1.4427 6 7 3.4627 3.4576 2.8239 7 6 4.1252 4.6051 3.0702 8 8 4.5193 5.2876 2.1485 9 6 4.3764 5.0400 4.4911 10 6 5.1445 6.3689 4.6017 11 6 5.9187 5.7286 5.7590 12 6 7.2157 6.1968 6.4096 13 6 5.9266 6.1242 7.2327 14 6 5.5997 4.3651 5.1364 15 6 2.1389 -1.1672 -0.0005 16 8 3.3517 -1.1672 -0.0001 17 6 1.3855 -2.4723 -0.0005 18 16 2.5617 -3.8480 -0.0005 19 6 1.4416 -5.2083 -0.0013 20 1 0.3763 -5.0305 -0.0020 21 6 1.9284 -6.5081 -0.0010 22 7 3.2267 -6.7246 -0.0006 23 14 0.7409 -7.9500 -0.0025 24 1 0.4277 -8.3320 -1.4029 25 1 1.3616 -9.1031 0.6980 26 1 -0.5104 -7.5615 0.6963 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3633 -0.8901 0.5137 29 1 -0.3633 0.8899 0.5139 30 1 1.6084 2.0284 -0.5137 31 1 3.1499 1.1385 -0.5138 32 1 3.0416 0.9506 1.9564 33 1 1.5001 1.8406 1.9564 34 1 2.6293 3.7949 0.9288 35 1 4.1704 2.9043 0.9289 36 1 3.1471 2.9118 3.5612 37 1 3.4801 5.0011 5.1100 38 1 4.5213 7.2102 4.9050 39 1 5.7630 6.5917 3.7322 40 1 7.9809 5.4455 6.6049 41 1 7.5858 7.1859 6.1399 42 1 5.8439 5.3251 7.9695 43 1 5.4485 7.0656 7.5038 44 1 6.3446 4.0287 4.4152 45 1 5.3413 3.5999 5.8685 46 1 0.7591 -2.5302 0.8897 47 1 0.7585 -2.5298 -0.8903 48 1 3.5669 -7.6330 -0.0007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001577361663.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:19 Heat of formation + Delta-G solvation = -55.049375 kcal Electronic energy + Delta-G solvation = -25833.711704 eV Core-core repulsion = 22015.282102 eV Total energy + Delta-G solvation = -3818.429602 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.46644 -40.85193 -39.45199 -37.29304 -36.03664 -34.58465 -34.57549 -33.08212 -30.65077 -28.12069 -27.68910 -26.81220 -26.67419 -24.82442 -23.31487 -22.84015 -21.26411 -20.54059 -19.52386 -19.32434 -18.20000 -18.08401 -17.44429 -16.88164 -16.85081 -16.71884 -16.67289 -16.12417 -16.02468 -15.81122 -15.25725 -15.10955 -14.56301 -14.52426 -14.27317 -13.66446 -13.56348 -13.53344 -13.34343 -13.29910 -13.16876 -13.06838 -12.92924 -12.87420 -12.68452 -12.58236 -12.47274 -12.33194 -11.86912 -11.69534 -11.35741 -11.27068 -11.14169 -10.90165 -10.78202 -10.53626 -10.26164 -10.13565 -9.70634 -8.67338 -8.34477 -6.12938 1.26406 1.42763 1.46668 1.56587 1.56936 1.57754 2.03654 2.26441 2.29846 2.83440 2.99761 3.27126 3.37808 3.52754 3.64283 3.70594 3.85102 3.90485 3.94735 3.98663 4.11074 4.22612 4.24543 4.37756 4.38271 4.43649 4.49478 4.57699 4.67349 4.73490 4.76372 4.79517 4.80606 4.82645 4.96605 4.99221 5.03597 5.05771 5.13887 5.23273 5.28535 5.31124 5.41768 5.42814 5.58890 6.19711 6.27712 6.52056 7.06759 7.15558 7.21611 8.74708 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016963 B = 0.001662 C = 0.001565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.211711 B =16844.406356 C =17888.157796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.610 5.610 3 C 0.117 3.883 4 C -0.131 4.131 5 C 0.127 3.873 6 N -0.718 5.718 7 C 0.518 3.482 8 O -0.586 6.586 9 C -0.124 4.124 10 C -0.079 4.079 11 C -0.175 4.175 12 C -0.174 4.174 13 C -0.136 4.136 14 C -0.081 4.081 15 C 0.529 3.471 16 O -0.565 6.565 17 C -0.124 4.124 18 S -0.156 6.156 19 C -0.545 4.545 20 H 0.083 0.917 21 C 0.013 3.987 22 N -0.912 5.912 23 Si 0.999 3.001 24 H -0.269 1.269 25 H -0.278 1.278 26 H -0.257 1.257 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.104 0.896 30 H 0.115 0.885 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.047 0.953 36 H 0.415 0.585 37 H 0.142 0.858 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.072 0.928 45 H 0.094 0.906 46 H 0.109 0.891 47 H 0.106 0.894 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.748 26.776 12.563 30.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.344 5.344 3 C -0.006 4.006 4 C -0.170 4.170 5 C 0.002 3.998 6 N -0.370 5.370 7 C 0.306 3.694 8 O -0.466 6.466 9 C -0.145 4.145 10 C -0.117 4.117 11 C -0.175 4.175 12 C -0.211 4.211 13 C -0.173 4.173 14 C -0.119 4.119 15 C 0.316 3.684 16 O -0.444 6.444 17 C -0.275 4.275 18 S 0.072 5.928 19 C -0.693 4.693 20 H 0.102 0.898 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.820 3.180 24 H -0.194 1.194 25 H -0.204 1.204 26 H -0.180 1.180 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.123 0.877 30 H 0.133 0.867 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.115 0.885 34 H 0.095 0.905 35 H 0.066 0.934 36 H 0.252 0.748 37 H 0.160 0.840 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.125 0.875 43 H 0.124 0.876 44 H 0.090 0.910 45 H 0.112 0.888 46 H 0.128 0.872 47 H 0.124 0.876 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.590 27.145 11.885 29.849 hybrid contribution -1.495 -1.370 -0.058 2.028 sum -5.085 25.775 11.827 28.811 Atomic orbital electron populations 1.22120 0.76701 1.04931 1.03409 1.47850 1.08583 1.04571 1.73400 1.21432 0.97872 0.84627 0.96690 1.21995 1.01563 0.95466 0.98006 1.21153 0.99589 0.95766 0.83281 1.45978 1.57753 1.23947 1.09303 1.21032 0.76216 0.80242 0.91935 1.90678 1.52612 1.55510 1.47833 1.22697 1.00786 0.99172 0.91811 1.22323 0.97192 0.95647 0.96523 1.22169 1.02668 0.97395 0.95251 1.22896 0.91252 1.02890 1.04058 1.22916 0.99911 1.03537 0.90909 1.22374 0.95111 0.95579 0.98807 1.20174 0.87283 0.85616 0.75310 1.90685 1.15740 1.87515 1.50420 1.23383 1.02685 0.95019 1.06394 1.85606 1.12774 0.97421 1.97034 1.23200 0.94638 0.92621 1.58863 0.89841 1.26133 0.97579 1.01711 0.93730 1.70187 1.14146 1.22455 1.48014 0.84949 0.77928 0.76305 0.78778 1.19377 1.20362 1.18033 0.91203 0.90727 0.87748 0.86727 0.92174 0.92993 0.88522 0.90485 0.93432 0.74844 0.84015 0.89950 0.90764 0.88468 0.88483 0.87475 0.87558 0.90965 0.88781 0.87249 0.87589 0.92024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.06 10.24 127.77 1.31 2.37 16 2 N -0.61 -14.87 2.87 -846.76 -2.43 -17.31 16 3 C 0.12 2.36 5.41 86.38 0.47 2.83 16 4 C -0.13 -2.27 5.65 30.60 0.17 -2.10 16 5 C 0.13 2.28 5.67 86.38 0.49 2.77 16 6 N -0.72 -11.53 5.56 -463.07 -2.57 -14.10 16 7 C 0.52 10.33 7.36 87.66 0.65 10.97 16 8 O -0.59 -16.99 15.90 -3.03 -0.05 -17.04 16 9 C -0.12 -1.66 4.14 -10.94 -0.05 -1.70 16 10 C -0.08 -1.19 7.42 30.98 0.23 -0.96 16 11 C -0.17 -2.22 3.09 -52.33 -0.16 -2.38 16 12 C -0.17 -2.03 10.53 30.46 0.32 -1.71 16 13 C -0.14 -1.24 10.54 30.50 0.32 -0.92 16 14 C -0.08 -1.07 7.65 30.98 0.24 -0.83 16 15 C 0.53 19.35 7.69 87.66 0.67 20.02 16 16 O -0.57 -26.11 15.44 -3.03 -0.05 -26.16 16 17 C -0.12 -4.84 4.71 71.24 0.34 -4.51 16 18 S -0.16 -8.62 20.57 -56.49 -1.16 -9.78 16 19 C -0.55 -30.88 9.50 67.95 0.65 -30.24 16 20 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 21 C 0.01 0.75 5.49 84.86 0.47 1.21 16 22 N -0.91 -55.86 13.22 21.65 0.29 -55.57 16 23 Si 1.00 43.11 29.55 68.60 2.03 45.14 16 24 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 25 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 26 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 27 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.07 1.19 6.44 -2.39 -0.02 1.17 16 29 H 0.10 0.88 8.07 -2.39 -0.02 0.86 16 30 H 0.11 1.49 8.07 -2.39 -0.02 1.48 16 31 H 0.06 1.59 7.42 -2.39 -0.02 1.57 16 32 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 36 H 0.42 4.44 8.47 -92.70 -0.79 3.65 16 37 H 0.14 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.07 1.50 7.43 -2.39 -0.02 1.48 16 40 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.11 0.78 8.14 -2.38 -0.02 0.76 16 44 H 0.07 1.21 8.09 -2.39 -0.02 1.19 16 45 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 46 H 0.11 3.82 7.40 -2.39 -0.02 3.80 16 47 H 0.11 3.77 8.11 -2.39 -0.02 3.75 16 48 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -83.23 412.86 2.32 -80.91 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: 0.16 Total: 19.09 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: 6.11 Total: -5.18 kcal Atomic # 7 Polarization: -82.27 SS G_CDS: -4.72 Total: -86.99 kcal Atomic # 8 Polarization: -43.10 SS G_CDS: -0.09 Total: -43.20 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: -8.62 SS G_CDS: -1.16 Total: -9.78 kcal Total: -83.23 2.32 -80.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577361663.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.860 kcal (2) G-P(sol) polarization free energy of solvation -83.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds