Wall clock time and date at job start Sat Apr 11 2020 06:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.46887 * 2 1 4 4 C 1.52999 * 109.47200 * 239.99680 * 2 1 3 5 5 N 1.46497 * 109.46992 * 184.99961 * 4 2 1 6 6 C 1.34777 * 119.99525 * 179.97438 * 5 4 2 7 7 O 1.21283 * 120.00463 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99675 * 179.72583 * 6 5 4 9 9 S 1.80997 * 109.47151 * 180.27780 * 8 6 5 10 10 C 1.76196 * 100.00314 * 179.97438 * 9 8 6 11 11 H 1.08005 * 120.00018 * 0.02562 * 10 9 8 12 12 C 1.38799 * 120.00626 * 179.97438 * 10 9 8 13 13 N 1.31633 * 119.99674 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00584 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47157 * 59.99781 * 14 12 10 16 16 H 1.48496 * 109.47271 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.46802 * 300.00045 * 14 12 10 18 18 N 1.46501 * 109.47053 * 119.99665 * 2 1 3 19 19 C 1.34777 * 120.00014 * 274.99733 * 18 2 1 20 20 O 1.21283 * 120.00290 * 0.02562 * 19 18 2 21 21 C 1.50702 * 119.99874 * 179.97438 * 19 18 2 22 22 H 1.08994 * 115.57941 * 325.85116 * 21 19 18 23 23 C 1.52313 * 117.53671 * 111.82124 * 21 19 18 24 24 H 1.09003 * 115.91049 * 0.85149 * 23 21 19 25 25 C 1.50453 * 120.89896 * 218.09018 * 23 21 19 26 26 C 1.52871 * 110.08458 * 310.03007 * 25 23 21 27 27 C 1.53295 * 108.59512 * 305.00241 * 26 25 23 28 28 C 1.52876 * 108.58151 * 74.43903 * 27 26 25 29 29 C 1.52075 * 60.63814 * 107.37482 * 23 21 19 30 30 H 1.08999 * 117.25730 * 252.86494 * 29 23 21 31 31 H 1.09001 * 109.46990 * 300.00107 * 1 2 3 32 32 H 1.08994 * 109.47308 * 60.00286 * 1 2 3 33 33 H 1.09003 * 109.47254 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.46838 * 64.99849 * 4 2 1 35 35 H 1.09001 * 109.46617 * 305.00184 * 4 2 1 36 36 H 0.97000 * 120.00580 * 0.02562 * 5 4 2 37 37 H 1.09009 * 109.47352 * 300.27556 * 8 6 5 38 38 H 1.08998 * 109.47585 * 60.27844 * 8 6 5 39 39 H 0.97003 * 120.00297 * 179.97438 * 13 12 10 40 40 H 0.96996 * 119.99960 * 95.00040 * 18 2 1 41 41 H 1.09000 * 109.57577 * 189.83732 * 25 23 21 42 42 H 1.09004 * 109.36347 * 70.09517 * 25 23 21 43 43 H 1.08998 * 109.61753 * 185.26512 * 26 25 23 44 44 H 1.09008 * 109.76350 * 64.82288 * 26 25 23 45 45 H 1.09007 * 109.61628 * 314.71748 * 27 26 25 46 46 H 1.08995 * 109.77078 * 194.26483 * 27 26 25 47 47 H 1.09003 * 109.35868 * 185.27275 * 28 27 26 48 48 H 1.08995 * 109.35957 * 65.69347 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1905 6 6 4.1729 -1.4293 -2.1906 7 8 3.5699 -1.8843 -3.1394 8 6 5.6753 -1.5319 -2.1332 9 16 6.2792 -2.3800 -3.6138 10 6 8.0115 -2.3606 -3.2925 11 1 8.3877 -1.9082 -2.3869 12 6 8.8926 -2.9277 -4.2028 13 7 8.4340 -3.4805 -5.3059 14 14 10.7291 -2.9078 -3.8619 15 1 11.0054 -3.6329 -2.5957 16 1 11.4472 -3.5722 -4.9790 17 1 11.1945 -1.5030 -3.7395 18 7 2.0183 -0.6905 1.1962 19 6 2.1471 -0.0181 2.3571 20 8 1.8583 1.1586 2.4117 21 6 2.6489 -0.7286 3.5878 22 1 2.3538 -1.7737 3.6810 23 6 4.0200 -0.3325 4.1197 24 1 4.5346 0.4557 3.5702 25 6 4.9588 -1.3654 4.6813 26 6 4.2309 -2.2338 5.7074 27 6 3.6145 -1.3195 6.7723 28 6 2.3905 -0.6282 6.1715 29 6 2.7737 0.0922 4.8807 30 1 2.4933 1.1444 4.8317 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 1.7516 -0.1584 -2.1369 35 1 1.6053 -1.7198 -1.2950 36 1 3.9824 -0.4628 -0.4315 37 1 6.1064 -0.5318 -2.0862 38 1 5.9675 -2.0955 -1.2471 39 1 9.0497 -3.8765 -5.9423 40 1 2.2490 -1.6317 1.1527 41 1 5.8015 -0.8695 5.1630 42 1 5.3273 -1.9966 3.8726 43 1 4.9388 -2.9169 6.1768 44 1 3.4435 -2.8046 5.2149 45 1 4.3446 -0.5701 7.0782 46 1 3.3133 -1.9111 7.6367 47 1 1.9971 0.0951 6.8858 48 1 1.6244 -1.3730 5.9558 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001583646462.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:05 Heat of formation + Delta-G solvation = -76.867223 kcal Electronic energy + Delta-G solvation = -26847.282739 eV Core-core repulsion = 23027.907044 eV Total energy + Delta-G solvation = -3819.375695 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.90524 -39.51886 -38.75707 -36.45205 -33.69420 -33.48011 -32.44593 -31.40529 -31.23480 -29.40974 -26.23981 -25.82912 -25.36706 -23.16069 -22.95998 -21.21084 -20.47269 -20.35263 -18.98155 -18.01125 -17.66540 -16.77872 -16.29258 -16.15920 -15.48355 -15.20654 -15.10401 -14.82045 -14.63869 -14.39026 -14.16390 -14.04474 -13.91239 -13.49942 -13.12692 -12.93503 -12.89503 -12.75802 -12.60784 -12.52942 -12.24834 -12.15065 -11.83110 -11.54533 -11.32033 -11.26722 -11.06500 -11.05285 -10.78540 -10.68683 -10.30320 -10.20004 -9.93032 -9.84935 -9.51922 -9.38981 -9.08541 -8.97699 -8.26772 -6.52440 -6.23352 -3.94280 2.19934 2.74050 2.99672 3.05112 3.22165 3.26260 3.29544 3.40254 3.67388 4.16534 4.18749 4.28278 4.32418 4.37986 4.57708 4.62213 4.70792 4.81587 4.87593 4.95286 4.98545 5.10853 5.11573 5.11736 5.19686 5.30842 5.32701 5.39878 5.50393 5.51344 5.55458 5.55758 5.66971 5.73335 5.74287 5.81184 5.85192 5.87141 5.89780 5.91292 6.00406 6.10519 6.17695 6.51688 7.19325 7.57331 7.62430 7.94598 8.33151 8.54516 9.21832 10.83997 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010200 B = 0.002498 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2744.352683 B =11207.567855 C =13531.615171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.131 3.869 3 H 0.095 0.905 4 C 0.113 3.887 5 N -0.739 5.739 6 C 0.532 3.468 7 O -0.516 6.516 8 C -0.153 4.153 9 S -0.059 6.059 10 C -0.536 4.536 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.868 5.868 14 Si 0.919 3.081 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 N -0.723 5.723 19 C 0.546 3.454 20 O -0.540 6.540 21 C -0.193 4.193 22 H 0.123 0.877 23 C -0.107 4.107 24 H 0.102 0.898 25 C -0.093 4.093 26 C -0.124 4.124 27 C -0.120 4.120 28 C -0.091 4.091 29 C -0.109 4.109 30 H 0.116 0.884 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.399 0.601 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.269 0.731 40 H 0.404 0.596 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.063 0.937 45 H 0.066 0.934 46 H 0.063 0.937 47 H 0.069 0.931 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.614 5.202 23.782 27.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.026 3.974 3 H 0.113 0.887 4 C -0.011 4.011 5 N -0.395 5.395 6 C 0.318 3.682 7 O -0.390 6.390 8 C -0.304 4.304 9 S 0.167 5.833 10 C -0.685 4.685 11 H 0.090 0.910 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.199 1.199 18 N -0.375 5.375 19 C 0.333 3.667 20 O -0.417 6.417 21 C -0.214 4.214 22 H 0.141 0.859 23 C -0.126 4.126 24 H 0.120 0.880 25 C -0.130 4.130 26 C -0.162 4.162 27 C -0.158 4.158 28 C -0.129 4.129 29 C -0.127 4.127 30 H 0.134 0.866 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.233 0.767 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.079 0.921 40 H 0.239 0.761 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.085 0.915 46 H 0.082 0.918 47 H 0.088 0.912 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.807 5.196 22.020 27.040 hybrid contribution 2.125 0.210 1.472 2.593 sum -12.683 5.406 23.492 27.239 Atomic orbital electron populations 1.22101 0.94048 1.02679 1.03073 1.21250 0.94957 0.97829 0.83322 0.88709 1.21610 0.81173 1.01308 0.97050 1.45994 1.06782 1.62012 1.24681 1.20325 0.89540 0.76724 0.81587 1.90711 1.69883 1.45992 1.32439 1.23529 0.93474 1.05706 1.07696 1.85391 1.04538 1.73262 1.20064 1.22821 0.91475 1.44554 1.09603 0.90990 1.24992 0.99604 0.94515 0.94453 1.70007 1.35532 1.35448 1.09300 0.86222 0.82751 0.78493 0.78032 1.19932 1.20800 1.19928 1.46074 1.67594 1.14449 1.09425 1.19730 0.76764 0.86622 0.83624 1.90699 1.50076 1.16034 1.84931 1.22492 1.03829 1.00866 0.94226 0.85896 1.21487 0.88690 1.01007 1.01408 0.87996 1.20650 0.97228 0.96431 0.98705 1.21640 1.00003 0.97778 0.96771 1.21581 0.97549 0.98864 0.97772 1.21090 0.97781 0.99189 0.94830 1.22343 1.00326 0.99645 0.90409 0.86610 0.91637 0.91048 0.92010 0.89957 0.90912 0.76728 0.89244 0.89268 0.92108 0.76137 0.90700 0.90840 0.91557 0.91820 0.91532 0.91778 0.91229 0.91491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 9.48 37.16 0.35 -0.92 16 2 C 0.13 1.17 2.73 -67.93 -0.19 0.98 16 3 H 0.09 0.98 7.58 -51.93 -0.39 0.59 16 4 C 0.11 1.20 5.23 -4.04 -0.02 1.18 16 5 N -0.74 -9.33 5.39 -60.30 -0.32 -9.65 16 6 C 0.53 9.57 7.85 -10.98 -0.09 9.48 16 7 O -0.52 -11.37 15.86 5.55 0.09 -11.28 16 8 C -0.15 -3.03 6.16 36.01 0.22 -2.81 16 9 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 10 C -0.54 -15.14 9.50 30.94 0.29 -14.84 16 11 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 12 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 13 N -0.87 -26.00 13.22 55.49 0.73 -25.27 16 14 Si 0.92 21.24 29.55 -169.99 -5.02 16.21 16 15 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 18 N -0.72 -5.95 4.52 -53.81 -0.24 -6.20 16 19 C 0.55 5.39 7.58 -10.98 -0.08 5.30 16 20 O -0.54 -7.25 15.92 5.56 0.09 -7.16 16 21 C -0.19 -1.49 5.34 -91.78 -0.49 -1.98 16 22 H 0.12 0.77 7.31 -51.93 -0.38 0.40 16 23 C -0.11 -0.81 5.53 -92.71 -0.51 -1.32 16 24 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 25 C -0.09 -0.60 5.92 -28.07 -0.17 -0.76 16 26 C -0.12 -0.71 5.70 -26.64 -0.15 -0.86 16 27 C -0.12 -0.66 5.92 -26.64 -0.16 -0.81 16 28 C -0.09 -0.55 5.83 -26.94 -0.16 -0.71 16 29 C -0.11 -0.83 5.75 -90.90 -0.52 -1.36 16 30 H 0.12 1.06 7.66 -51.93 -0.40 0.67 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.40 4.26 8.14 -40.82 -0.33 3.93 16 37 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 38 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 39 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.40 2.77 8.60 -40.82 -0.35 2.42 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.06 0.36 7.15 -51.92 -0.37 -0.01 16 45 H 0.07 0.38 8.04 -51.93 -0.42 -0.04 16 46 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.07 0.39 8.06 -51.93 -0.42 -0.03 16 LS Contribution 404.88 15.07 6.10 6.10 Total: -1.00 -34.92 404.88 -10.66 -45.58 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -8.10 Total: 2.89 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: -1.76 Total: -7.43 kcal Atomic # 7 Polarization: -41.28 SS G_CDS: 0.17 Total: -41.12 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: 0.18 Total: -18.44 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.92 -10.66 -45.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001583646462.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.288 kcal (2) G-P(sol) polarization free energy of solvation -34.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds