Wall clock time and date at job start Sat Apr 11 2020 06:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.46887 * 2 1 4 4 C 1.52999 * 109.47200 * 239.99680 * 2 1 3 5 5 N 1.46497 * 109.46992 * 184.99961 * 4 2 1 6 6 C 1.34777 * 119.99525 * 179.97438 * 5 4 2 7 7 O 1.21283 * 120.00463 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99675 * 179.72583 * 6 5 4 9 9 S 1.80997 * 109.47151 * 180.27780 * 8 6 5 10 10 C 1.76196 * 100.00314 * 179.97438 * 9 8 6 11 11 H 1.08005 * 120.00018 * 0.02562 * 10 9 8 12 12 C 1.38799 * 120.00626 * 179.97438 * 10 9 8 13 13 N 1.31633 * 119.99674 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00584 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47157 * 59.99781 * 14 12 10 16 16 H 1.48496 * 109.47271 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.46802 * 300.00045 * 14 12 10 18 18 N 1.46501 * 109.47053 * 119.99665 * 2 1 3 19 19 C 1.34777 * 120.00014 * 274.99733 * 18 2 1 20 20 O 1.21283 * 120.00290 * 0.02562 * 19 18 2 21 21 C 1.50702 * 119.99874 * 179.97438 * 19 18 2 22 22 H 1.08994 * 115.57941 * 325.85116 * 21 19 18 23 23 C 1.52313 * 117.53671 * 111.82124 * 21 19 18 24 24 H 1.09003 * 115.91049 * 0.85149 * 23 21 19 25 25 C 1.50453 * 120.89896 * 218.09018 * 23 21 19 26 26 C 1.52871 * 110.08458 * 310.03007 * 25 23 21 27 27 C 1.53295 * 108.59512 * 305.00241 * 26 25 23 28 28 C 1.52876 * 108.58151 * 74.43903 * 27 26 25 29 29 C 1.52075 * 60.63814 * 107.37482 * 23 21 19 30 30 H 1.08999 * 117.25730 * 252.86494 * 29 23 21 31 31 H 1.09001 * 109.46990 * 300.00107 * 1 2 3 32 32 H 1.08994 * 109.47308 * 60.00286 * 1 2 3 33 33 H 1.09003 * 109.47254 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.46838 * 64.99849 * 4 2 1 35 35 H 1.09001 * 109.46617 * 305.00184 * 4 2 1 36 36 H 0.97000 * 120.00580 * 0.02562 * 5 4 2 37 37 H 1.09009 * 109.47352 * 300.27556 * 8 6 5 38 38 H 1.08998 * 109.47585 * 60.27844 * 8 6 5 39 39 H 0.97003 * 120.00297 * 179.97438 * 13 12 10 40 40 H 0.96996 * 119.99960 * 95.00040 * 18 2 1 41 41 H 1.09000 * 109.57577 * 189.83732 * 25 23 21 42 42 H 1.09004 * 109.36347 * 70.09517 * 25 23 21 43 43 H 1.08998 * 109.61753 * 185.26512 * 26 25 23 44 44 H 1.09008 * 109.76350 * 64.82288 * 26 25 23 45 45 H 1.09007 * 109.61628 * 314.71748 * 27 26 25 46 46 H 1.08995 * 109.77078 * 194.26483 * 27 26 25 47 47 H 1.09003 * 109.35868 * 185.27275 * 28 27 26 48 48 H 1.08995 * 109.35957 * 65.69347 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1905 6 6 4.1729 -1.4293 -2.1906 7 8 3.5699 -1.8843 -3.1394 8 6 5.6753 -1.5319 -2.1332 9 16 6.2792 -2.3800 -3.6138 10 6 8.0115 -2.3606 -3.2925 11 1 8.3877 -1.9082 -2.3869 12 6 8.8926 -2.9277 -4.2028 13 7 8.4340 -3.4805 -5.3059 14 14 10.7291 -2.9078 -3.8619 15 1 11.0054 -3.6329 -2.5957 16 1 11.4472 -3.5722 -4.9790 17 1 11.1945 -1.5030 -3.7395 18 7 2.0183 -0.6905 1.1962 19 6 2.1471 -0.0181 2.3571 20 8 1.8583 1.1586 2.4117 21 6 2.6489 -0.7286 3.5878 22 1 2.3538 -1.7737 3.6810 23 6 4.0200 -0.3325 4.1197 24 1 4.5346 0.4557 3.5702 25 6 4.9588 -1.3654 4.6813 26 6 4.2309 -2.2338 5.7074 27 6 3.6145 -1.3195 6.7723 28 6 2.3905 -0.6282 6.1715 29 6 2.7737 0.0922 4.8807 30 1 2.4933 1.1444 4.8317 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 1.7516 -0.1584 -2.1369 35 1 1.6053 -1.7198 -1.2950 36 1 3.9824 -0.4628 -0.4315 37 1 6.1064 -0.5318 -2.0862 38 1 5.9675 -2.0955 -1.2471 39 1 9.0497 -3.8765 -5.9423 40 1 2.2490 -1.6317 1.1527 41 1 5.8015 -0.8695 5.1630 42 1 5.3273 -1.9966 3.8726 43 1 4.9388 -2.9169 6.1768 44 1 3.4435 -2.8046 5.2149 45 1 4.3446 -0.5701 7.0782 46 1 3.3133 -1.9111 7.6367 47 1 1.9971 0.0951 6.8858 48 1 1.6244 -1.3730 5.9558 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001583646462.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:04 Heat of formation + Delta-G solvation = -99.872436 kcal Electronic energy + Delta-G solvation = -26848.280320 eV Core-core repulsion = 23027.907044 eV Total energy + Delta-G solvation = -3820.373276 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.62041 -40.69605 -39.64191 -37.42540 -34.84373 -34.57568 -34.04255 -32.29096 -31.73637 -30.80302 -27.73866 -26.97012 -26.47948 -23.80553 -23.45009 -22.00166 -21.74040 -21.16883 -19.87207 -19.51940 -18.49011 -17.83357 -17.63236 -17.16522 -16.87314 -16.49658 -16.18478 -16.00097 -15.77711 -15.29804 -14.89206 -14.83159 -14.74956 -14.57377 -14.49123 -14.22025 -13.88233 -13.65502 -13.27961 -13.25969 -13.16738 -13.11129 -12.99586 -12.86266 -12.70882 -12.61882 -12.11974 -12.02407 -11.75105 -11.73991 -11.19104 -11.12637 -11.00986 -10.98253 -10.80139 -10.57945 -10.28232 -10.22183 -10.16719 -8.66262 -8.34302 -6.12242 1.26431 1.43478 1.44093 1.46787 1.56227 1.58696 2.01389 2.25743 2.29408 2.77932 2.99820 3.31677 3.51470 3.59544 3.71385 3.77609 3.94057 4.01136 4.03138 4.08503 4.18963 4.23960 4.28930 4.37179 4.43211 4.50350 4.55500 4.62274 4.69635 4.70373 4.74007 4.83242 4.92978 5.01307 5.06387 5.10006 5.19922 5.27271 5.33097 5.34901 5.36974 5.41954 5.43834 5.44936 5.53658 6.19843 6.40918 6.48140 7.07051 7.18282 7.19665 8.74538 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010200 B = 0.002498 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2744.352683 B =11207.567855 C =13531.615171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.141 3.859 3 H 0.083 0.917 4 C 0.116 3.884 5 N -0.714 5.714 6 C 0.537 3.463 7 O -0.561 6.561 8 C -0.131 4.131 9 S -0.147 6.147 10 C -0.547 4.547 11 H 0.082 0.918 12 C 0.014 3.986 13 N -0.911 5.911 14 Si 0.997 3.003 15 H -0.261 1.261 16 H -0.279 1.279 17 H -0.263 1.263 18 N -0.713 5.713 19 C 0.545 3.455 20 O -0.579 6.579 21 C -0.190 4.190 22 H 0.143 0.857 23 C -0.104 4.104 24 H 0.088 0.912 25 C -0.091 4.091 26 C -0.123 4.123 27 C -0.118 4.118 28 C -0.089 4.089 29 C -0.112 4.112 30 H 0.096 0.904 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.412 0.588 37 H 0.105 0.895 38 H 0.111 0.889 39 H 0.271 0.729 40 H 0.414 0.586 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.066 0.934 45 H 0.063 0.937 46 H 0.074 0.926 47 H 0.072 0.928 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.133 4.980 26.008 29.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.036 3.964 3 H 0.101 0.899 4 C -0.008 4.008 5 N -0.368 5.368 6 C 0.323 3.677 7 O -0.439 6.439 8 C -0.282 4.282 9 S 0.080 5.920 10 C -0.695 4.695 11 H 0.100 0.900 12 C -0.191 4.191 13 N -0.547 5.547 14 Si 0.819 3.181 15 H -0.185 1.185 16 H -0.204 1.204 17 H -0.188 1.188 18 N -0.366 5.366 19 C 0.333 3.667 20 O -0.459 6.459 21 C -0.211 4.211 22 H 0.161 0.839 23 C -0.123 4.123 24 H 0.106 0.894 25 C -0.128 4.128 26 C -0.161 4.161 27 C -0.156 4.156 28 C -0.126 4.126 29 C -0.130 4.130 30 H 0.114 0.886 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.248 0.752 37 H 0.123 0.877 38 H 0.129 0.871 39 H 0.080 0.920 40 H 0.250 0.750 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.093 0.907 47 H 0.091 0.909 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.341 4.978 24.293 28.646 hybrid contribution 1.863 0.359 0.843 2.076 sum -12.478 5.337 25.136 28.565 Atomic orbital electron populations 1.22054 0.92885 1.03409 1.03029 1.21105 0.95688 0.96891 0.82691 0.89890 1.21724 0.79369 1.01861 0.97815 1.45724 1.07760 1.59872 1.23410 1.19999 0.88808 0.76937 0.81996 1.90704 1.70357 1.48384 1.34460 1.23374 0.94806 1.05669 1.04365 1.85548 1.05679 1.75169 1.25642 1.23166 0.91708 1.44569 1.10050 0.89973 1.26113 1.05164 0.93804 0.94024 1.70173 1.37451 1.36567 1.10530 0.85023 0.75802 0.79025 0.78281 1.18526 1.20440 1.18811 1.46004 1.66908 1.14804 1.08840 1.20085 0.76091 0.86167 0.84378 1.90687 1.51894 1.17805 1.85552 1.22523 1.03887 1.01492 0.93171 0.83950 1.21475 0.88669 1.00964 1.01151 0.89375 1.20654 0.97037 0.96192 0.98955 1.21645 1.00156 0.97704 0.96571 1.21573 0.97118 0.98820 0.98041 1.21094 0.98244 0.99299 0.93956 1.22337 1.00483 0.98876 0.91337 0.88611 0.92688 0.90099 0.90886 0.90193 0.90314 0.75203 0.87653 0.87068 0.91989 0.74981 0.90514 0.90786 0.90937 0.91501 0.91864 0.90711 0.90887 0.90878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 9.48 71.98 0.68 -1.52 16 2 C 0.14 2.29 2.73 44.99 0.12 2.42 16 3 H 0.08 1.62 7.58 -2.39 -0.02 1.60 16 4 C 0.12 2.26 5.23 86.38 0.45 2.71 16 5 N -0.71 -16.67 5.39 -463.07 -2.49 -19.16 16 6 C 0.54 18.76 7.85 87.66 0.69 19.45 16 7 O -0.56 -24.77 15.86 -3.04 -0.05 -24.82 16 8 C -0.13 -5.02 6.16 71.24 0.44 -4.58 16 9 S -0.15 -8.04 20.57 -56.49 -1.16 -9.20 16 10 C -0.55 -30.83 9.50 67.95 0.65 -30.18 16 11 H 0.08 4.29 7.80 -2.91 -0.02 4.26 16 12 C 0.01 0.78 5.49 84.86 0.47 1.24 16 13 N -0.91 -55.47 13.22 21.65 0.29 -55.18 16 14 Si 1.00 43.07 29.55 68.60 2.03 45.10 16 15 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 16 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 17 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 18 N -0.71 -10.47 4.52 -442.53 -2.00 -12.47 16 19 C 0.54 10.16 7.58 87.66 0.66 10.83 16 20 O -0.58 -15.45 15.92 -3.04 -0.05 -15.50 16 21 C -0.19 -2.64 5.34 -11.54 -0.06 -2.71 16 22 H 0.14 1.42 7.31 -2.39 -0.02 1.40 16 23 C -0.10 -1.45 5.53 -12.15 -0.07 -1.51 16 24 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 25 C -0.09 -1.01 5.92 29.73 0.18 -0.84 16 26 C -0.12 -1.12 5.70 30.65 0.17 -0.95 16 27 C -0.12 -1.05 5.92 30.65 0.18 -0.87 16 28 C -0.09 -0.92 5.83 30.46 0.18 -0.75 16 29 C -0.11 -1.62 5.75 -10.97 -0.06 -1.69 16 30 H 0.10 1.80 7.66 -2.39 -0.02 1.78 16 31 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.41 7.79 8.14 -92.71 -0.75 7.03 16 37 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 38 H 0.11 3.78 8.14 -2.40 -0.02 3.76 16 39 H 0.27 15.37 8.31 -92.71 -0.77 14.59 16 40 H 0.41 4.64 8.60 -92.71 -0.80 3.85 16 41 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.07 0.58 7.15 -2.38 -0.02 0.56 16 45 H 0.06 0.61 8.04 -2.38 -0.02 0.59 16 46 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 47 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.07 0.69 8.06 -2.39 -0.02 0.67 16 Total: -1.00 -77.40 404.88 0.65 -76.75 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: -0.59 Total: 23.45 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: 4.68 Total: -8.95 kcal Atomic # 7 Polarization: -82.61 SS G_CDS: -4.21 Total: -86.82 kcal Atomic # 8 Polarization: -40.22 SS G_CDS: -0.10 Total: -40.32 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 16 Polarization: -8.04 SS G_CDS: -1.16 Total: -9.20 kcal Total: -77.40 0.65 -76.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001583646462.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.126 kcal (2) G-P(sol) polarization free energy of solvation -77.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds