Wall clock time and date at job start Sat Apr 11 2020 06:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46952 * 2 1 4 4 C 1.53006 * 109.46811 * 119.99472 * 2 1 3 5 5 N 1.46505 * 109.46857 * 175.00429 * 4 2 1 6 6 C 1.34773 * 119.99936 * 180.02562 * 5 4 2 7 7 O 1.21281 * 119.99948 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99778 * 179.97438 * 6 5 4 9 9 S 1.81004 * 109.46854 * 179.97438 * 8 6 5 10 10 C 1.76202 * 100.00086 * 180.02562 * 9 8 6 11 11 H 1.08005 * 119.99769 * 359.97438 * 10 9 8 12 12 C 1.38793 * 120.00200 * 179.97438 * 10 9 8 13 13 N 1.31632 * 120.00199 * 179.97438 * 12 10 9 14 14 Si 1.86806 * 120.00011 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.47362 * 89.99716 * 14 12 10 16 16 H 1.48497 * 109.46831 * 209.99846 * 14 12 10 17 17 H 1.48499 * 109.46627 * 329.99481 * 14 12 10 18 18 N 1.46501 * 109.47262 * 239.99627 * 2 1 3 19 19 C 1.34777 * 119.99814 * 85.00100 * 18 2 1 20 20 O 1.21280 * 120.00205 * 359.97438 * 19 18 2 21 21 C 1.50701 * 119.99719 * 179.97438 * 19 18 2 22 22 H 1.08998 * 115.57206 * 34.15152 * 21 19 18 23 23 C 1.52299 * 117.53684 * 179.97438 * 21 19 18 24 24 H 1.09002 * 115.91807 * 1.59127 * 23 21 19 25 25 C 1.52074 * 119.83643 * 217.19866 * 23 21 19 26 26 C 1.52870 * 110.51620 * 310.44571 * 25 23 21 27 27 C 1.53306 * 108.59150 * 305.11283 * 26 25 23 28 28 C 1.52879 * 108.58005 * 74.43992 * 27 26 25 29 29 C 1.51362 * 117.72111 * 248.83408 * 21 19 18 30 30 H 1.08996 * 117.37834 * 359.86720 * 29 21 19 31 31 H 1.08997 * 109.46522 * 60.00862 * 1 2 3 32 32 H 1.09007 * 109.46721 * 180.02562 * 1 2 3 33 33 H 1.08990 * 109.47046 * 300.00318 * 1 2 3 34 34 H 1.08993 * 109.47039 * 294.99995 * 4 2 1 35 35 H 1.08993 * 109.47184 * 55.00516 * 4 2 1 36 36 H 0.97004 * 119.99872 * 359.97438 * 5 4 2 37 37 H 1.08994 * 109.47851 * 299.99755 * 8 6 5 38 38 H 1.08998 * 109.47365 * 60.00362 * 8 6 5 39 39 H 0.96996 * 120.00254 * 179.97438 * 13 12 10 40 40 H 0.97003 * 119.99763 * 264.99725 * 18 2 1 41 41 H 1.09005 * 109.26395 * 190.17849 * 25 23 21 42 42 H 1.09001 * 109.27276 * 70.71916 * 25 23 21 43 43 H 1.09002 * 109.61917 * 185.38227 * 26 25 23 44 44 H 1.08995 * 109.76737 * 64.92836 * 26 25 23 45 45 H 1.09003 * 109.61971 * 194.17340 * 27 26 25 46 46 H 1.09000 * 109.61670 * 314.71591 * 27 26 25 47 47 H 1.08998 * 109.35313 * 65.68733 * 28 27 26 48 48 H 1.09002 * 109.35554 * 185.26719 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2494 5 7 3.5001 -0.8262 1.1908 6 6 4.1730 -1.4289 2.1909 7 8 3.5699 -1.8839 3.1397 8 6 5.6748 -1.5375 2.1303 9 16 6.2782 -2.3905 3.6084 10 6 8.0100 -2.3775 3.2837 11 1 8.3862 -1.9251 2.3780 12 6 8.8906 -2.9487 4.1918 13 7 10.1843 -2.9394 3.9490 14 14 8.2398 -3.7318 5.7579 15 1 7.9530 -5.1678 5.5112 16 1 9.2568 -3.6078 6.8329 17 1 6.9924 -3.0423 6.1747 18 7 2.0184 -0.6907 -1.1961 19 6 2.1471 -0.0184 -2.3571 20 8 1.8583 1.1583 -2.4118 21 6 2.6501 -0.7287 -3.5874 22 1 2.3558 -1.7741 -3.6804 23 6 2.7733 0.0846 -4.8691 24 1 2.5099 1.1394 -4.7912 25 6 2.4367 -0.5558 -6.2068 26 6 3.1487 -1.9008 -6.3512 27 6 4.6513 -1.6837 -6.1380 28 6 4.9053 -1.4672 -4.6461 29 6 4.0186 -0.3481 -4.1102 30 1 4.5658 0.4229 -3.5678 31 1 -0.3632 0.5137 -0.8901 32 1 -0.3633 -1.0278 0.0005 33 1 -0.3633 0.5138 0.8899 34 1 1.7516 -0.1582 2.1370 35 1 1.6054 -1.7197 1.2953 36 1 3.9824 -0.4627 0.4317 37 1 5.9630 -2.1003 1.2426 38 1 6.1098 -0.5391 2.0846 39 1 10.7998 -3.3382 4.5838 40 1 2.2491 -1.6319 -1.1524 41 1 2.7529 0.1069 -7.0124 42 1 1.3596 -0.7103 -6.2708 43 1 2.9750 -2.3015 -7.3498 44 1 2.7706 -2.6000 -5.6054 45 1 5.2000 -2.5617 -6.4791 46 1 4.9770 -0.8058 -6.6959 47 1 4.6683 -2.3819 -4.1028 48 1 5.9553 -1.2188 -4.4907 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001584070282.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:17 Heat of formation + Delta-G solvation = -76.751029 kcal Electronic energy + Delta-G solvation = -26880.521239 eV Core-core repulsion = 23061.150582 eV Total energy + Delta-G solvation = -3819.370657 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.96642 -39.60060 -38.80991 -36.51103 -33.77993 -33.56781 -32.46091 -31.46354 -31.17142 -29.55060 -26.26638 -25.84903 -25.52511 -23.19087 -22.93946 -21.26019 -20.55503 -20.47916 -18.84633 -18.09333 -17.76614 -16.78476 -16.42651 -16.18211 -15.53767 -15.35175 -15.16943 -14.98260 -14.50678 -14.42420 -14.22011 -14.01351 -13.87507 -13.62202 -13.19917 -13.02828 -12.87775 -12.81143 -12.70252 -12.58594 -12.32455 -12.12794 -11.96326 -11.54827 -11.36662 -11.29591 -11.28348 -11.02996 -10.69063 -10.63576 -10.41554 -10.16092 -9.93319 -9.88550 -9.62626 -9.45172 -9.09859 -9.01502 -8.53281 -6.94749 -6.31090 -4.03188 2.18807 2.66158 2.77145 2.91300 3.27263 3.31707 3.42842 3.48479 3.61787 4.15182 4.26437 4.30823 4.31885 4.36135 4.57717 4.63268 4.69317 4.70581 4.78400 4.83586 4.93060 4.96313 5.07948 5.13034 5.19510 5.21686 5.27049 5.31210 5.35692 5.48427 5.52694 5.55539 5.62621 5.67517 5.72322 5.72796 5.82977 5.84968 5.85487 5.92504 5.97399 5.99801 6.13720 6.41651 7.15763 7.51227 7.91568 7.91965 8.39356 8.41143 9.15001 10.78158 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011538 B = 0.002452 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.092717 B =11417.738200 C =13421.755546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.131 3.869 3 H 0.095 0.905 4 C 0.114 3.886 5 N -0.737 5.737 6 C 0.531 3.469 7 O -0.518 6.518 8 C -0.124 4.124 9 S -0.141 6.141 10 C -0.521 4.521 11 H 0.088 0.912 12 C 0.095 3.905 13 N -0.880 5.880 14 Si 0.857 3.143 15 H -0.267 1.267 16 H -0.274 1.274 17 H -0.235 1.235 18 N -0.724 5.724 19 C 0.546 3.454 20 O -0.540 6.540 21 C -0.189 4.189 22 H 0.122 0.878 23 C -0.108 4.108 24 H 0.113 0.887 25 C -0.089 4.089 26 C -0.125 4.125 27 C -0.120 4.120 28 C -0.094 4.094 29 C -0.114 4.114 30 H 0.106 0.894 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.400 0.600 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.271 0.729 40 H 0.404 0.596 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.065 0.935 46 H 0.066 0.934 47 H 0.068 0.932 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.996 4.244 -20.999 27.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.026 3.974 3 H 0.113 0.887 4 C -0.011 4.011 5 N -0.392 5.392 6 C 0.317 3.683 7 O -0.393 6.393 8 C -0.275 4.275 9 S 0.085 5.915 10 C -0.669 4.669 11 H 0.106 0.894 12 C -0.113 4.113 13 N -0.517 5.517 14 Si 0.682 3.318 15 H -0.192 1.192 16 H -0.199 1.199 17 H -0.159 1.159 18 N -0.376 5.376 19 C 0.333 3.667 20 O -0.417 6.417 21 C -0.210 4.210 22 H 0.140 0.860 23 C -0.126 4.126 24 H 0.131 0.869 25 C -0.126 4.126 26 C -0.162 4.162 27 C -0.157 4.157 28 C -0.132 4.132 29 C -0.133 4.133 30 H 0.124 0.876 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.235 0.765 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.081 0.919 40 H 0.239 0.761 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.086 0.914 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -19.037 4.291 -19.356 27.486 hybrid contribution 1.020 -0.190 -0.613 1.205 sum -18.017 4.101 -19.969 27.206 Atomic orbital electron populations 1.22102 0.94010 1.02685 1.03111 1.21250 0.94987 0.97853 0.83280 0.88653 1.21626 0.80967 1.01366 0.97160 1.45957 1.06898 1.61824 1.24569 1.20294 0.89471 0.76831 0.81700 1.90707 1.69855 1.46192 1.32504 1.23274 0.93309 1.05562 1.05338 1.84789 1.06968 1.75341 1.24376 1.22309 0.88631 1.44736 1.11224 0.89391 1.24716 0.94104 0.94527 0.97973 1.69936 1.01559 1.43487 1.36690 0.86734 0.80817 0.81204 0.83092 1.19208 1.19923 1.15922 1.46065 1.67651 1.14438 1.09427 1.19737 0.76692 0.86631 0.83666 1.90700 1.49984 1.16044 1.84924 1.22101 1.03759 1.01080 0.94079 0.85974 1.21892 1.00074 0.99931 0.90732 0.86870 1.20879 1.00402 0.96452 0.94864 1.21644 0.95661 0.97096 1.01797 1.21573 0.96109 1.01912 0.96114 1.21089 0.99138 0.97067 0.95858 1.21856 0.88630 1.00859 1.01923 0.87607 0.91579 0.92009 0.91056 0.89907 0.90858 0.76549 0.88523 0.88472 0.91916 0.76134 0.90926 0.91361 0.91640 0.91840 0.91612 0.91521 0.91354 0.90766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.20 9.48 37.16 0.35 -0.85 16 2 C 0.13 1.10 2.73 -67.92 -0.19 0.92 16 3 H 0.10 0.94 7.58 -51.93 -0.39 0.55 16 4 C 0.11 1.12 5.23 -4.04 -0.02 1.10 16 5 N -0.74 -8.74 5.39 -60.29 -0.32 -9.07 16 6 C 0.53 9.00 7.85 -10.99 -0.09 8.91 16 7 O -0.52 -10.75 15.86 5.56 0.09 -10.66 16 8 C -0.12 -2.34 6.16 36.00 0.22 -2.11 16 9 S -0.14 -3.52 18.55 -107.50 -1.99 -5.52 16 10 C -0.52 -14.87 10.04 30.94 0.31 -14.56 16 11 H 0.09 2.61 8.03 -52.48 -0.42 2.19 16 12 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16 13 N -0.88 -26.40 13.97 55.49 0.78 -25.63 16 14 Si 0.86 21.61 27.74 -169.99 -4.72 16.90 16 15 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 16 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.24 -5.92 6.74 56.52 0.38 -5.54 16 18 N -0.72 -5.69 4.52 -53.80 -0.24 -5.93 16 19 C 0.55 5.26 7.58 -10.98 -0.08 5.18 16 20 O -0.54 -7.13 15.85 5.56 0.09 -7.04 16 21 C -0.19 -1.44 5.27 -92.96 -0.49 -1.92 16 22 H 0.12 0.75 7.27 -51.93 -0.38 0.38 16 23 C -0.11 -0.82 5.65 -91.90 -0.52 -1.34 16 24 H 0.11 1.04 7.55 -51.93 -0.39 0.65 16 25 C -0.09 -0.53 5.93 -27.27 -0.16 -0.69 16 26 C -0.12 -0.68 5.70 -26.64 -0.15 -0.83 16 27 C -0.12 -0.69 5.94 -26.63 -0.16 -0.85 16 28 C -0.09 -0.62 5.86 -27.04 -0.16 -0.78 16 29 C -0.11 -0.86 5.73 -92.15 -0.53 -1.39 16 30 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.40 4.02 8.14 -40.82 -0.33 3.69 16 37 H 0.10 1.67 8.14 -51.92 -0.42 1.25 16 38 H 0.10 1.73 8.14 -51.92 -0.42 1.30 16 39 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 40 H 0.40 2.60 8.60 -40.82 -0.35 2.25 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.06 0.35 7.12 -51.93 -0.37 -0.02 16 45 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.07 0.39 8.04 -51.93 -0.42 -0.02 16 47 H 0.07 0.44 8.06 -51.93 -0.42 0.02 16 48 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 402.02 15.07 6.06 6.06 Total: -1.00 -34.61 402.02 -10.15 -44.75 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -8.13 Total: 2.66 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: -1.75 Total: -6.53 kcal Atomic # 7 Polarization: -40.83 SS G_CDS: 0.21 Total: -40.62 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: 0.18 Total: -17.70 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.72 Total: 16.90 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -1.99 Total: -5.52 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.61 -10.15 -44.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584070282.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.998 kcal (2) G-P(sol) polarization free energy of solvation -34.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds