Wall clock time and date at job start Sat Apr 11 2020 06:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46952 * 2 1 4 4 C 1.53006 * 109.46811 * 119.99472 * 2 1 3 5 5 N 1.46505 * 109.46857 * 175.00429 * 4 2 1 6 6 C 1.34773 * 119.99936 * 180.02562 * 5 4 2 7 7 O 1.21281 * 119.99948 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99778 * 179.97438 * 6 5 4 9 9 S 1.81004 * 109.46854 * 179.97438 * 8 6 5 10 10 C 1.76202 * 100.00086 * 180.02562 * 9 8 6 11 11 H 1.08005 * 119.99769 * 359.97438 * 10 9 8 12 12 C 1.38793 * 120.00200 * 179.97438 * 10 9 8 13 13 N 1.31632 * 120.00199 * 179.97438 * 12 10 9 14 14 Si 1.86806 * 120.00011 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.47362 * 89.99716 * 14 12 10 16 16 H 1.48497 * 109.46831 * 209.99846 * 14 12 10 17 17 H 1.48499 * 109.46627 * 329.99481 * 14 12 10 18 18 N 1.46501 * 109.47262 * 239.99627 * 2 1 3 19 19 C 1.34777 * 119.99814 * 85.00100 * 18 2 1 20 20 O 1.21280 * 120.00205 * 359.97438 * 19 18 2 21 21 C 1.50701 * 119.99719 * 179.97438 * 19 18 2 22 22 H 1.08998 * 115.57206 * 34.15152 * 21 19 18 23 23 C 1.52299 * 117.53684 * 179.97438 * 21 19 18 24 24 H 1.09002 * 115.91807 * 1.59127 * 23 21 19 25 25 C 1.52074 * 119.83643 * 217.19866 * 23 21 19 26 26 C 1.52870 * 110.51620 * 310.44571 * 25 23 21 27 27 C 1.53306 * 108.59150 * 305.11283 * 26 25 23 28 28 C 1.52879 * 108.58005 * 74.43992 * 27 26 25 29 29 C 1.51362 * 117.72111 * 248.83408 * 21 19 18 30 30 H 1.08996 * 117.37834 * 359.86720 * 29 21 19 31 31 H 1.08997 * 109.46522 * 60.00862 * 1 2 3 32 32 H 1.09007 * 109.46721 * 180.02562 * 1 2 3 33 33 H 1.08990 * 109.47046 * 300.00318 * 1 2 3 34 34 H 1.08993 * 109.47039 * 294.99995 * 4 2 1 35 35 H 1.08993 * 109.47184 * 55.00516 * 4 2 1 36 36 H 0.97004 * 119.99872 * 359.97438 * 5 4 2 37 37 H 1.08994 * 109.47851 * 299.99755 * 8 6 5 38 38 H 1.08998 * 109.47365 * 60.00362 * 8 6 5 39 39 H 0.96996 * 120.00254 * 179.97438 * 13 12 10 40 40 H 0.97003 * 119.99763 * 264.99725 * 18 2 1 41 41 H 1.09005 * 109.26395 * 190.17849 * 25 23 21 42 42 H 1.09001 * 109.27276 * 70.71916 * 25 23 21 43 43 H 1.09002 * 109.61917 * 185.38227 * 26 25 23 44 44 H 1.08995 * 109.76737 * 64.92836 * 26 25 23 45 45 H 1.09003 * 109.61971 * 194.17340 * 27 26 25 46 46 H 1.09000 * 109.61670 * 314.71591 * 27 26 25 47 47 H 1.08998 * 109.35313 * 65.68733 * 28 27 26 48 48 H 1.09002 * 109.35554 * 185.26719 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2494 5 7 3.5001 -0.8262 1.1908 6 6 4.1730 -1.4289 2.1909 7 8 3.5699 -1.8839 3.1397 8 6 5.6748 -1.5375 2.1303 9 16 6.2782 -2.3905 3.6084 10 6 8.0100 -2.3775 3.2837 11 1 8.3862 -1.9251 2.3780 12 6 8.8906 -2.9487 4.1918 13 7 10.1843 -2.9394 3.9490 14 14 8.2398 -3.7318 5.7579 15 1 7.9530 -5.1678 5.5112 16 1 9.2568 -3.6078 6.8329 17 1 6.9924 -3.0423 6.1747 18 7 2.0184 -0.6907 -1.1961 19 6 2.1471 -0.0184 -2.3571 20 8 1.8583 1.1583 -2.4118 21 6 2.6501 -0.7287 -3.5874 22 1 2.3558 -1.7741 -3.6804 23 6 2.7733 0.0846 -4.8691 24 1 2.5099 1.1394 -4.7912 25 6 2.4367 -0.5558 -6.2068 26 6 3.1487 -1.9008 -6.3512 27 6 4.6513 -1.6837 -6.1380 28 6 4.9053 -1.4672 -4.6461 29 6 4.0186 -0.3481 -4.1102 30 1 4.5658 0.4229 -3.5678 31 1 -0.3632 0.5137 -0.8901 32 1 -0.3633 -1.0278 0.0005 33 1 -0.3633 0.5138 0.8899 34 1 1.7516 -0.1582 2.1370 35 1 1.6054 -1.7197 1.2953 36 1 3.9824 -0.4627 0.4317 37 1 5.9630 -2.1003 1.2426 38 1 6.1098 -0.5391 2.0846 39 1 10.7998 -3.3382 4.5838 40 1 2.2491 -1.6319 -1.1524 41 1 2.7529 0.1069 -7.0124 42 1 1.3596 -0.7103 -6.2708 43 1 2.9750 -2.3015 -7.3498 44 1 2.7706 -2.6000 -5.6054 45 1 5.2000 -2.5617 -6.4791 46 1 4.9770 -0.8058 -6.6959 47 1 4.6683 -2.3819 -4.1028 48 1 5.9553 -1.2188 -4.4907 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001584070282.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:16 Heat of formation + Delta-G solvation = -99.635196 kcal Electronic energy + Delta-G solvation = -26881.513571 eV Core-core repulsion = 23061.150582 eV Total energy + Delta-G solvation = -3820.362988 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.66861 -40.73969 -39.64579 -37.43732 -34.86914 -34.66515 -34.12709 -32.31669 -31.67936 -30.86797 -27.89808 -27.01108 -26.47663 -23.81729 -23.44749 -22.01013 -21.78712 -21.23740 -19.92959 -19.36675 -18.64615 -17.88674 -17.64455 -17.21456 -17.03067 -16.52779 -16.17191 -16.08114 -15.72691 -15.17197 -15.02827 -14.90647 -14.81214 -14.75772 -14.53279 -14.27296 -13.90277 -13.67120 -13.34467 -13.32024 -13.23465 -13.13043 -13.01118 -13.00167 -12.68809 -12.63625 -12.11994 -12.02117 -11.86497 -11.78199 -11.21834 -11.17015 -11.06468 -11.04761 -10.78820 -10.56781 -10.54112 -10.23963 -10.18372 -8.99500 -8.51517 -6.22332 0.98458 1.31653 1.43605 1.46776 1.53537 1.55494 2.00038 2.21892 2.26159 2.71086 2.81038 2.86830 3.50710 3.58646 3.69648 3.79949 3.83700 4.02151 4.04071 4.06006 4.18598 4.21102 4.24655 4.34625 4.41551 4.46177 4.55557 4.61826 4.69313 4.69410 4.73544 4.84725 4.91792 5.00322 5.05459 5.12114 5.19479 5.26585 5.32490 5.33547 5.35532 5.42325 5.44913 5.52783 5.70677 6.11585 6.36653 6.47305 6.93649 7.12840 7.18654 8.60941 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011538 B = 0.002452 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.092717 B =11417.738200 C =13421.755546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.140 3.860 3 H 0.083 0.917 4 C 0.117 3.883 5 N -0.713 5.713 6 C 0.538 3.462 7 O -0.558 6.558 8 C -0.113 4.113 9 S -0.172 6.172 10 C -0.529 4.529 11 H 0.061 0.939 12 C 0.045 3.955 13 N -0.918 5.918 14 Si 0.915 3.085 15 H -0.261 1.261 16 H -0.261 1.261 17 H -0.236 1.236 18 N -0.713 5.713 19 C 0.544 3.456 20 O -0.579 6.579 21 C -0.184 4.184 22 H 0.143 0.857 23 C -0.110 4.110 24 H 0.092 0.908 25 C -0.086 4.086 26 C -0.122 4.122 27 C -0.119 4.119 28 C -0.093 4.093 29 C -0.113 4.113 30 H 0.092 0.908 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.412 0.588 37 H 0.115 0.885 38 H 0.109 0.891 39 H 0.277 0.723 40 H 0.414 0.586 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.066 0.934 45 H 0.072 0.928 46 H 0.063 0.937 47 H 0.073 0.927 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.514 3.356 -21.635 29.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.035 3.965 3 H 0.101 0.899 4 C -0.007 4.007 5 N -0.367 5.367 6 C 0.324 3.676 7 O -0.436 6.436 8 C -0.264 4.264 9 S 0.055 5.945 10 C -0.676 4.676 11 H 0.080 0.920 12 C -0.161 4.161 13 N -0.556 5.556 14 Si 0.737 3.263 15 H -0.186 1.186 16 H -0.185 1.185 17 H -0.160 1.160 18 N -0.365 5.365 19 C 0.333 3.667 20 O -0.459 6.459 21 C -0.205 4.205 22 H 0.160 0.840 23 C -0.129 4.129 24 H 0.110 0.890 25 C -0.123 4.123 26 C -0.159 4.159 27 C -0.157 4.157 28 C -0.130 4.130 29 C -0.132 4.132 30 H 0.110 0.890 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.248 0.752 37 H 0.133 0.867 38 H 0.127 0.873 39 H 0.086 0.914 40 H 0.251 0.749 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.085 0.915 45 H 0.091 0.909 46 H 0.082 0.918 47 H 0.092 0.908 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -20.559 3.404 -20.031 28.905 hybrid contribution 1.443 0.198 -0.553 1.558 sum -19.117 3.602 -20.584 28.322 Atomic orbital electron populations 1.22054 0.92863 1.03439 1.03023 1.21125 0.95711 0.96925 0.82727 0.89936 1.21744 0.79148 1.02005 0.97805 1.45724 1.07882 1.59755 1.23353 1.19875 0.88492 0.77102 0.82139 1.90702 1.70192 1.48410 1.34276 1.23272 0.94946 1.05540 1.02644 1.84683 1.04434 1.76765 1.28644 1.22461 0.90889 1.44036 1.10238 0.92033 1.25579 0.94347 0.95103 1.01042 1.70017 1.02750 1.44665 1.38150 0.85861 0.80395 0.80396 0.79692 1.18559 1.18494 1.15994 1.45992 1.66898 1.14810 1.08830 1.20073 0.76046 0.86174 0.84454 1.90688 1.51830 1.17828 1.85556 1.22132 1.03589 1.01740 0.93066 0.83965 1.21889 1.00161 0.99084 0.91752 0.88957 1.20882 1.00789 0.96829 0.93796 1.21637 0.95102 0.96637 1.02519 1.21575 0.96606 1.02093 0.95386 1.21095 0.98659 0.96709 0.96536 1.21833 0.88643 1.00897 1.01814 0.89023 0.92794 0.90818 0.90042 0.89946 0.90062 0.75176 0.86707 0.87270 0.91373 0.74928 0.90566 0.90905 0.90606 0.91548 0.90938 0.91821 0.90805 0.91083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 9.48 71.98 0.68 -1.35 16 2 C 0.14 2.10 2.73 44.99 0.12 2.23 16 3 H 0.08 1.53 7.58 -2.39 -0.02 1.51 16 4 C 0.12 2.04 5.23 86.38 0.45 2.49 16 5 N -0.71 -15.26 5.39 -463.06 -2.50 -17.75 16 6 C 0.54 17.23 7.85 87.66 0.69 17.92 16 7 O -0.56 -22.33 15.86 -3.03 -0.05 -22.38 16 8 C -0.11 -4.09 6.16 71.24 0.44 -3.65 16 9 S -0.17 -8.47 18.55 -56.49 -1.05 -9.52 16 10 C -0.53 -30.36 10.04 67.95 0.68 -29.68 16 11 H 0.06 3.73 8.03 -2.91 -0.02 3.71 16 12 C 0.04 2.59 5.50 84.86 0.47 3.06 16 13 N -0.92 -55.53 13.97 21.65 0.30 -55.23 16 14 Si 0.91 44.44 27.74 68.60 1.90 46.35 16 15 H -0.26 -12.32 7.11 99.48 0.71 -11.61 16 16 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 17 H -0.24 -11.42 6.74 99.48 0.67 -10.75 16 18 N -0.71 -9.85 4.52 -442.52 -2.00 -11.85 16 19 C 0.54 9.94 7.58 87.66 0.66 10.60 16 20 O -0.58 -15.26 15.85 -3.03 -0.05 -15.30 16 21 C -0.18 -2.55 5.27 -12.31 -0.06 -2.61 16 22 H 0.14 1.39 7.27 -2.39 -0.02 1.37 16 23 C -0.11 -1.62 5.65 -11.62 -0.07 -1.68 16 24 H 0.09 1.76 7.55 -2.39 -0.02 1.74 16 25 C -0.09 -0.90 5.93 30.25 0.18 -0.72 16 26 C -0.12 -1.06 5.70 30.65 0.17 -0.89 16 27 C -0.12 -1.18 5.94 30.66 0.18 -1.00 16 28 C -0.09 -1.09 5.86 30.39 0.18 -0.91 16 29 C -0.11 -1.62 5.73 -11.78 -0.07 -1.68 16 30 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 33 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.41 7.24 8.14 -92.71 -0.75 6.48 16 37 H 0.11 3.75 8.14 -2.40 -0.02 3.73 16 38 H 0.11 3.71 8.14 -2.40 -0.02 3.69 16 39 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 40 H 0.41 4.21 8.60 -92.71 -0.80 3.41 16 41 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 42 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.07 0.55 7.12 -2.39 -0.02 0.54 16 45 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 46 H 0.06 0.67 8.04 -2.39 -0.02 0.65 16 47 H 0.07 0.79 8.06 -2.39 -0.02 0.77 16 48 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -75.08 402.02 0.66 -74.42 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: -0.62 Total: 19.12 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: 4.71 Total: -7.86 kcal Atomic # 7 Polarization: -80.64 SS G_CDS: -4.19 Total: -84.83 kcal Atomic # 8 Polarization: -37.59 SS G_CDS: -0.10 Total: -37.68 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.90 Total: 46.35 kcal Atomic # 16 Polarization: -8.47 SS G_CDS: -1.05 Total: -9.52 kcal Total: -75.08 0.66 -74.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584070282.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.215 kcal (2) G-P(sol) polarization free energy of solvation -75.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds