Wall clock time and date at job start Sat Apr 11 2020 06:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34773 * 120.00252 * 2 1 4 4 O 1.21275 * 120.00172 * 179.97438 * 3 2 1 5 5 C 1.50698 * 119.99864 * 0.02562 * 3 2 1 6 6 C 1.52999 * 109.47471 * 179.97438 * 5 3 2 7 7 C 1.52992 * 109.47558 * 179.97438 * 6 5 3 8 8 C 1.52999 * 109.47558 * 180.02562 * 7 6 5 9 9 C 1.52995 * 117.50206 * 243.75129 * 8 7 6 10 10 C 1.52995 * 117.50473 * 175.08573 * 8 7 6 11 11 C 1.46500 * 119.99883 * 180.02562 * 2 1 3 12 12 C 1.53501 * 114.20747 * 59.99913 * 11 2 1 13 13 N 1.47065 * 87.98741 * 220.14872 * 12 11 2 14 14 C 1.34775 * 136.05752 * 207.08848 * 13 12 11 15 15 O 1.21276 * 119.99984 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00022 * 180.02562 * 14 13 12 17 17 S 1.80998 * 109.47116 * 179.97438 * 16 14 13 18 18 C 1.76199 * 100.00013 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00250 * 0.02562 * 18 17 16 20 20 C 1.38798 * 120.00102 * 179.72368 * 18 17 16 21 21 N 1.31626 * 120.00155 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00292 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47145 * 60.00107 * 22 20 18 24 24 H 1.48496 * 109.47291 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47229 * 300.00299 * 22 20 18 26 26 C 1.47067 * 87.88377 * 27.34414 * 13 12 11 27 27 H 1.08997 * 109.47425 * 269.99969 * 1 2 3 28 28 H 1.08998 * 109.46947 * 30.00222 * 1 2 3 29 29 H 1.09000 * 109.47115 * 149.99552 * 1 2 3 30 30 H 1.09004 * 109.47048 * 299.99757 * 5 3 2 31 31 H 1.09000 * 109.47172 * 59.99779 * 5 3 2 32 32 H 1.09003 * 109.46780 * 300.00551 * 6 5 3 33 33 H 1.09005 * 109.46469 * 59.99637 * 6 5 3 34 34 H 1.09004 * 109.47208 * 300.00218 * 7 6 5 35 35 H 1.09000 * 109.46925 * 60.00186 * 7 6 5 36 36 H 1.09008 * 115.54740 * 29.41847 * 8 7 6 37 37 H 1.09000 * 117.50090 * 359.97438 * 9 8 7 38 38 H 1.08998 * 117.50044 * 145.01912 * 9 8 7 39 39 H 1.08993 * 117.50354 * 214.97997 * 10 8 7 40 40 H 1.09004 * 117.49484 * 0.02562 * 10 8 7 41 41 H 1.09001 * 113.28417 * 193.06610 * 11 2 1 42 42 H 1.09001 * 113.46643 * 105.36573 * 12 11 2 43 43 H 1.08996 * 113.46488 * 334.93033 * 12 11 2 44 44 H 1.09001 * 109.47434 * 59.99478 * 16 14 13 45 45 H 1.08999 * 109.47072 * 299.99957 * 16 14 13 46 46 H 0.97004 * 120.00604 * 179.97438 * 21 20 18 47 47 H 1.09001 * 113.47005 * 87.43764 * 26 13 12 48 48 H 1.09003 * 113.46723 * 217.87945 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3516 1.1671 0.0005 5 6 1.3854 2.4722 0.0006 6 6 2.3796 3.6352 0.0011 7 6 1.6147 4.9602 0.0011 8 6 2.6089 6.1231 0.0009 9 6 2.6118 7.0502 1.2180 10 6 2.0403 7.5387 -0.1154 11 6 2.1975 -1.2687 -0.0006 12 6 1.9059 -2.1633 -1.2134 13 7 1.9168 -3.3161 -0.3004 14 6 2.1840 -4.6331 -0.4033 15 8 2.5087 -5.1042 -1.4726 16 6 2.0782 -5.5205 0.8101 17 16 2.4950 -7.2212 0.3519 18 6 2.2957 -8.0159 1.9118 19 1 1.9969 -7.4416 2.7762 20 6 2.5167 -9.3812 2.0284 21 7 2.8757 -10.0823 0.9738 22 14 2.3062 -10.2237 3.6823 23 1 0.9097 -10.0447 4.1548 24 1 2.5995 -11.6725 3.5408 25 1 3.2424 -9.6234 4.6664 26 6 1.5013 -2.4006 0.7730 27 1 -0.3634 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8899 -0.5139 30 1 0.7584 2.5302 -0.8892 31 1 0.7591 2.5298 0.8908 32 1 3.0063 3.5770 0.8911 33 1 3.0063 3.5777 -0.8890 34 1 0.9883 5.0181 -0.8891 35 1 0.9878 5.0178 0.8909 36 1 3.5655 5.9238 -0.4822 37 1 1.9052 6.8320 2.0187 38 1 3.5702 7.4611 1.5354 39 1 2.6229 8.2708 -0.6746 40 1 0.9578 7.6416 -0.1914 41 1 3.2575 -1.1544 0.2258 42 1 2.7144 -2.1807 -1.9443 43 1 0.9319 -1.9771 -1.6659 44 1 1.0595 -5.4879 1.1964 45 1 2.7690 -5.1708 1.5773 46 1 3.0305 -11.0364 1.0553 47 1 0.4207 -2.2770 0.8442 48 1 1.9652 -2.6203 1.7346 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001585495098.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:30 Heat of formation + Delta-G solvation = -13.416006 kcal Electronic energy + Delta-G solvation = -25912.353654 eV Core-core repulsion = 22095.729410 eV Total energy + Delta-G solvation = -3816.624244 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.04156 -39.57249 -38.16415 -37.61486 -35.15635 -34.19276 -32.44526 -30.58574 -28.90981 -27.83436 -27.13355 -26.07325 -25.44694 -23.46782 -22.80413 -21.47388 -20.91402 -19.42147 -19.09457 -17.82571 -17.53753 -16.94912 -16.59562 -16.45205 -15.92891 -15.47165 -15.14378 -14.82454 -14.79735 -14.65368 -14.06300 -13.96946 -13.62400 -13.44493 -13.12293 -12.88785 -12.84750 -12.67147 -12.55743 -12.53270 -12.39988 -12.12161 -11.98043 -11.80157 -11.48572 -11.29486 -11.22080 -11.05358 -11.04724 -10.78730 -10.66840 -10.32183 -10.13488 -9.85234 -9.48773 -9.07504 -9.05220 -8.68245 -8.26960 -6.52788 -6.22847 -3.94265 2.25141 2.32634 2.81501 3.05883 3.22674 3.24434 3.28253 3.34329 3.54498 3.98235 4.08263 4.18590 4.21967 4.44310 4.46038 4.48691 4.55937 4.62248 4.69745 4.79086 4.83718 4.90837 4.99440 5.10091 5.12260 5.15174 5.17748 5.19052 5.23269 5.30250 5.33380 5.34442 5.46651 5.49361 5.56531 5.65616 5.67391 5.74111 5.82283 5.85098 5.89043 5.96978 6.10558 6.13349 6.93980 7.57757 7.76567 7.80231 8.33494 8.46966 9.22113 10.84552 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.028739 B = 0.001543 C = 0.001507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.044272 B =18139.785770 C =18577.789864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.607 5.607 3 C 0.515 3.485 4 O -0.534 6.534 5 C -0.139 4.139 6 C -0.103 4.103 7 C -0.089 4.089 8 C -0.153 4.153 9 C -0.182 4.182 10 C -0.183 4.183 11 C 0.109 3.891 12 C 0.092 3.908 13 N -0.649 5.649 14 C 0.566 3.434 15 O -0.510 6.510 16 C -0.144 4.144 17 S -0.059 6.059 18 C -0.537 4.537 19 H 0.072 0.928 20 C 0.075 3.925 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.282 1.282 25 H -0.274 1.274 26 C 0.091 3.909 27 H 0.063 0.937 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.105 0.895 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.136 0.864 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.269 0.731 47 H 0.088 0.912 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.946 33.669 -0.031 34.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.341 5.341 3 C 0.304 3.696 4 O -0.409 6.409 5 C -0.178 4.178 6 C -0.141 4.141 7 C -0.126 4.126 8 C -0.171 4.171 9 C -0.219 4.219 10 C -0.220 4.220 11 C 0.004 3.996 12 C -0.033 4.033 13 N -0.389 5.389 14 C 0.356 3.644 15 O -0.383 6.383 16 C -0.295 4.295 17 S 0.168 5.832 18 C -0.685 4.685 19 H 0.091 0.909 20 C -0.135 4.135 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.033 4.033 27 H 0.081 0.919 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.123 0.877 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.153 0.847 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.107 0.893 45 H 0.108 0.892 46 H 0.079 0.921 47 H 0.105 0.895 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.709 32.511 -1.722 33.240 hybrid contribution -0.776 -0.065 2.316 2.444 sum -7.485 32.445 0.594 33.303 Atomic orbital electron populations 1.21905 0.79116 1.03776 1.02485 1.47766 1.07042 1.05422 1.73828 1.20822 0.88128 0.85292 0.75361 1.90728 1.14057 1.87309 1.48852 1.21739 0.99654 0.92092 1.04362 1.21345 0.97305 0.91533 1.03905 1.21194 0.96803 0.92612 1.02009 1.22351 1.01074 0.90995 1.02651 1.23050 1.02827 1.04284 0.91708 1.22977 1.00918 0.97337 1.00814 1.23013 0.98677 0.81090 0.96825 1.23329 1.02373 0.82552 0.95047 1.49355 1.70168 1.06057 1.13279 1.19931 0.75475 0.78550 0.90463 1.90727 1.45903 1.71967 1.29678 1.23478 1.05115 1.02818 0.98080 1.85418 1.89523 0.92766 1.15515 1.22813 1.54359 0.95957 0.95367 0.90947 1.24986 0.94492 0.96231 0.97771 1.70004 1.43384 1.07882 1.28972 0.86217 0.78786 0.78186 0.82271 1.19937 1.20767 1.19908 1.23414 1.00240 0.85924 0.93770 0.91881 0.90473 0.90464 0.88741 0.88766 0.90955 0.91034 0.91511 0.91761 0.87684 0.88812 0.88948 0.88935 0.88865 0.84653 0.89888 0.89966 0.89254 0.89156 0.92081 0.89451 0.89536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.28 8.92 59.85 0.53 0.82 16 2 N -0.61 -4.60 3.11 -173.56 -0.54 -5.14 16 3 C 0.52 4.57 7.67 -10.99 -0.08 4.49 16 4 O -0.53 -7.02 15.49 5.56 0.09 -6.94 16 5 C -0.14 -0.71 4.25 -27.88 -0.12 -0.83 16 6 C -0.10 -0.64 4.46 -26.74 -0.12 -0.76 16 7 C -0.09 -0.42 5.49 -26.74 -0.15 -0.56 16 8 C -0.15 -0.84 5.73 -90.62 -0.52 -1.36 16 9 C -0.18 -0.95 10.18 -26.70 -0.27 -1.22 16 10 C -0.18 -0.90 10.25 -26.70 -0.27 -1.18 16 11 C 0.11 1.07 4.57 -67.67 -0.31 0.76 16 12 C 0.09 1.05 8.17 -8.51 -0.07 0.98 16 13 N -0.65 -9.40 3.69 -185.08 -0.68 -10.09 16 14 C 0.57 11.15 8.10 -10.99 -0.09 11.07 16 15 O -0.51 -12.14 16.64 5.56 0.09 -12.05 16 16 C -0.14 -3.00 5.98 36.00 0.22 -2.78 16 17 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 18 C -0.54 -15.34 9.50 30.94 0.29 -15.04 16 19 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 20 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 21 N -0.87 -26.20 13.22 55.49 0.73 -25.47 16 22 Si 0.92 21.38 29.55 -169.99 -5.02 16.36 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 26 C 0.09 0.91 7.84 -8.37 -0.07 0.84 16 27 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.08 0.16 6.44 -51.93 -0.33 -0.17 16 29 H 0.08 0.32 6.17 -51.93 -0.32 0.00 16 30 H 0.09 0.31 7.40 -51.93 -0.38 -0.07 16 31 H 0.09 0.32 8.11 -51.93 -0.42 -0.10 16 32 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 33 H 0.07 0.54 8.10 -51.93 -0.42 0.11 16 34 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.06 0.27 7.88 -51.93 -0.41 -0.14 16 36 H 0.11 0.62 8.08 -51.92 -0.42 0.20 16 37 H 0.09 0.45 8.03 -51.93 -0.42 0.03 16 38 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.14 1.58 7.29 -51.93 -0.38 1.20 16 42 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 43 H 0.08 0.78 6.96 -51.93 -0.36 0.42 16 44 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 45 H 0.09 1.75 8.14 -51.92 -0.42 1.32 16 46 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 47 H 0.09 0.67 6.57 -51.93 -0.34 0.33 16 48 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 408.75 15.07 6.16 6.16 Total: -1.00 -36.92 408.75 -10.48 -47.40 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -7.98 Total: -3.67 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -1.12 Total: -2.74 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: -0.49 Total: -40.70 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: 0.18 Total: -18.99 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -36.92 -10.48 -47.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001585495098.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.985 kcal (2) G-P(sol) polarization free energy of solvation -36.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds