Wall clock time and date at job start Sat Apr 11 2020 06:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34961 * 125.63367 * 2 1 4 4 C 1.50699 * 125.50956 * 359.95675 * 3 2 1 5 5 N 1.46904 * 109.47168 * 275.00897 * 4 3 2 6 6 C 1.47172 * 111.00034 * 169.99982 * 5 4 3 7 7 C 1.52893 * 108.45918 * 52.33706 * 6 5 4 8 8 C 1.50683 * 109.98749 * 50.24903 * 7 6 5 9 9 C 1.41114 * 118.49301 * 163.29993 * 8 7 6 10 10 C 1.41397 * 120.08202 * 359.57957 * 9 8 7 11 11 H 1.07998 * 119.99996 * 25.68392 * 10 9 8 12 12 C 1.39947 * 120.00202 * 205.39910 * 10 9 8 13 13 N 1.30833 * 119.99760 * 17.40381 * 12 10 9 14 14 Si 1.86797 * 120.00176 * 197.40225 * 12 10 9 15 15 H 1.48508 * 109.47036 * 90.00374 * 14 12 10 16 16 H 1.48500 * 109.47042 * 210.00020 * 14 12 10 17 17 H 1.48494 * 109.47381 * 330.00209 * 14 12 10 18 18 C 1.40528 * 119.83911 * 179.85623 * 9 8 7 19 19 C 1.37646 * 119.53846 * 359.53633 * 18 9 8 20 20 C 1.38380 * 120.14047 * 0.55232 * 19 18 9 21 21 C 1.37201 * 121.80994 * 343.09517 * 8 7 6 22 22 C 1.46616 * 110.99765 * 292.96027 * 5 4 3 23 23 C 1.35487 * 108.98424 * 180.22838 * 3 2 1 24 24 C 1.39797 * 107.84395 * 359.63234 * 23 3 2 25 25 C 1.37700 * 125.63804 * 179.97438 * 2 1 3 26 26 C 1.46492 * 126.26137 * 0.02562 * 25 2 1 27 27 O 1.21624 * 120.00089 * 180.02562 * 26 25 2 28 28 O 1.34894 * 120.00142 * 359.97438 * 26 25 2 29 29 H 1.08999 * 109.47018 * 90.00664 * 1 2 3 30 30 H 1.09006 * 109.46796 * 210.00458 * 1 2 3 31 31 H 1.08994 * 109.47006 * 330.00381 * 1 2 3 32 32 H 1.08992 * 109.47540 * 155.00271 * 4 3 2 33 33 H 1.09004 * 109.46944 * 34.99842 * 4 3 2 34 34 H 1.09003 * 109.63592 * 292.64631 * 6 5 4 35 35 H 1.08998 * 109.63965 * 172.03171 * 6 5 4 36 36 H 1.09003 * 109.38571 * 290.09557 * 7 6 5 37 37 H 1.09005 * 109.38682 * 170.41023 * 7 6 5 38 38 H 0.96996 * 119.99880 * 179.97438 * 13 12 10 39 39 H 1.08007 * 120.23221 * 179.75952 * 18 9 8 40 40 H 1.08004 * 119.92667 * 180.27511 * 19 18 9 41 41 H 1.08005 * 119.54150 * 179.74135 * 20 19 18 42 42 H 1.09005 * 109.26219 * 49.40125 * 22 5 4 43 43 H 1.08996 * 109.26586 * 168.89505 * 22 5 4 44 44 H 1.08000 * 126.07823 * 179.74816 * 23 3 2 45 45 H 1.07995 * 126.51653 * 180.14472 * 24 23 3 46 46 H 0.96698 * 117.00026 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2513 1.0969 0.0000 4 6 1.7642 2.5230 -0.0009 5 7 1.4924 2.9467 -1.3810 6 6 0.7945 4.2422 -1.4072 7 6 1.5899 5.2378 -0.5623 8 6 3.0394 5.2198 -0.9737 9 6 3.8641 6.2954 -0.5809 10 6 3.3251 7.3628 0.1737 11 1 2.4561 7.2008 0.7941 12 6 3.9213 8.6278 0.1214 13 7 4.7420 8.9243 -0.8535 14 14 3.5454 9.8930 1.4432 15 1 4.5210 9.7531 2.5541 16 1 3.6457 11.2573 0.8653 17 1 2.1710 9.6745 1.9610 18 6 5.2209 6.3060 -0.9465 19 6 5.7348 5.2592 -1.6778 20 6 4.9168 4.2104 -2.0592 21 6 3.5696 4.1903 -1.7096 22 6 2.7315 3.0225 -2.1611 23 6 3.5494 0.7087 -0.0051 24 6 3.5785 -0.6889 0.0001 25 6 2.2673 -1.1191 0.0005 26 6 1.8122 -2.5115 0.0006 27 8 2.6244 -3.4168 0.0015 28 8 0.4923 -2.7897 0.0007 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5137 32 1 2.5278 3.1681 0.4335 33 1 0.8498 2.5950 0.5879 34 1 -0.2068 4.1273 -0.9921 35 1 0.7296 4.6027 -2.4338 36 1 1.5091 4.9650 0.4899 37 1 1.1852 6.2395 -0.7069 38 1 5.1550 9.8012 -0.8900 39 1 5.8569 7.1279 -0.6525 40 1 6.7778 5.2588 -1.9584 41 1 5.3292 3.3960 -2.6366 42 1 3.2976 2.1006 -2.0273 43 1 2.4855 3.1436 -3.2160 44 1 4.4088 1.3628 -0.0102 45 1 4.4597 -1.3133 0.0002 46 1 0.2404 -3.7233 0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600914572.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:34 Heat of formation + Delta-G solvation = -19.888117 kcal Electronic energy + Delta-G solvation = -29583.466080 eV Core-core repulsion = 25631.117233 eV Total energy + Delta-G solvation = -3952.348847 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.61910 -39.83700 -39.17789 -36.36728 -36.26134 -33.71618 -32.91573 -31.94615 -30.78098 -29.46814 -28.44594 -26.68622 -26.46476 -25.16702 -23.77405 -22.80128 -21.77936 -20.57739 -20.28990 -19.65845 -18.31022 -18.18376 -17.34472 -16.95592 -16.17208 -15.65312 -15.56719 -15.18453 -14.66098 -14.53607 -14.30402 -14.14537 -13.92842 -13.39716 -13.36149 -13.14361 -12.84296 -12.71790 -12.44779 -12.31275 -12.11421 -11.94569 -11.70499 -11.58697 -11.51439 -11.40765 -11.24113 -11.08585 -10.89824 -10.88321 -10.70185 -10.46247 -10.17806 -9.85746 -9.30495 -9.18816 -8.71083 -8.21943 -7.85089 -7.35222 -7.24341 -6.79592 -4.40647 1.16945 2.61101 2.68923 2.73836 2.88710 2.98029 3.03327 3.05548 3.14929 3.18124 3.88101 4.39329 4.56419 4.69810 4.81184 5.01294 5.15649 5.29030 5.45779 5.48739 5.53980 5.58006 5.62322 5.77030 5.84464 5.90788 5.99062 6.07546 6.10883 6.25027 6.26879 6.31558 6.33170 6.48952 6.58280 6.60845 6.81198 6.86891 7.00527 7.02957 7.13643 7.15664 7.24760 7.37060 7.46374 7.59720 7.74937 7.87103 8.01240 8.07374 8.22940 8.58785 8.84409 8.93725 10.14227 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020034 B = 0.002796 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.312447 B =10012.051030 C =10508.799125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.405 5.405 3 C 0.091 3.909 4 C 0.107 3.893 5 N -0.525 5.525 6 C 0.054 3.946 7 C -0.088 4.088 8 C -0.186 4.186 9 C 0.114 3.886 10 C -0.461 4.461 11 H 0.078 0.922 12 C 0.077 3.923 13 N -0.792 5.792 14 Si 0.905 3.095 15 H -0.268 1.268 16 H -0.278 1.278 17 H -0.263 1.263 18 C -0.165 4.165 19 C -0.105 4.105 20 C -0.232 4.232 21 C -0.089 4.089 22 C 0.094 3.906 23 C -0.205 4.205 24 C -0.090 4.090 25 C -0.067 4.067 26 C 0.558 3.442 27 O -0.516 6.516 28 O -0.521 6.521 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.052 0.948 37 H 0.072 0.928 38 H 0.280 0.720 39 H 0.116 0.884 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.150 0.850 45 H 0.149 0.851 46 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.779 -13.186 1.903 15.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.079 5.079 3 C -0.029 4.029 4 C -0.021 4.021 5 N -0.247 5.247 6 C -0.074 4.074 7 C -0.126 4.126 8 C -0.187 4.187 9 C 0.112 3.888 10 C -0.490 4.490 11 H 0.096 0.904 12 C -0.141 4.141 13 N -0.418 5.418 14 Si 0.729 3.271 15 H -0.193 1.193 16 H -0.204 1.204 17 H -0.187 1.187 18 C -0.185 4.185 19 C -0.123 4.123 20 C -0.252 4.252 21 C -0.090 4.090 22 C -0.034 4.034 23 C -0.228 4.228 24 C -0.117 4.117 25 C -0.176 4.176 26 C 0.404 3.596 27 O -0.405 6.405 28 O -0.333 6.333 29 H 0.098 0.902 30 H 0.112 0.888 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.134 0.866 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.098 0.902 43 H 0.090 0.910 44 H 0.167 0.833 45 H 0.166 0.834 46 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -9.066 -13.239 1.581 16.123 hybrid contribution 0.402 0.805 0.789 1.197 sum -8.665 -12.433 2.370 15.339 Atomic orbital electron populations 1.22198 0.76284 1.04403 1.04147 1.43765 1.06697 1.04737 1.52724 1.20511 0.90361 0.88629 1.03354 1.20718 1.01231 0.88384 0.91773 1.62788 1.22492 1.28771 1.10682 1.22239 0.96390 0.87705 1.01048 1.20674 0.94004 0.99769 0.98140 1.19215 0.93963 0.98462 1.07077 1.17497 0.90951 0.90824 0.89555 1.19548 1.12208 0.93299 1.23978 0.90418 1.25898 0.93546 0.99592 0.95081 1.69830 1.23237 1.22012 1.26699 0.86367 0.80045 0.79228 0.81424 1.19317 1.20363 1.18651 1.21272 0.95648 0.98308 1.03239 1.20625 0.97367 0.94994 0.99361 1.20238 0.93867 1.00684 1.10371 1.19596 0.94297 0.95660 0.99474 1.21041 0.88616 0.96803 0.96944 1.20834 0.95925 0.94523 1.11558 1.21304 0.93966 0.94971 1.01431 1.19156 0.90858 0.83477 1.24116 1.19525 0.79751 0.88034 0.72255 1.90938 1.54992 1.46719 1.47822 1.84644 1.26613 1.35584 1.86507 0.90200 0.88848 0.89725 0.90109 0.90534 0.91441 0.90708 0.92978 0.91002 0.90917 0.86633 0.89596 0.89616 0.90231 0.90963 0.83276 0.83360 0.73055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.66 10.34 59.85 0.62 1.28 16 2 N -0.40 -5.09 3.15 -115.77 -0.36 -5.46 16 3 C 0.09 1.27 5.67 -82.20 -0.47 0.81 16 4 C 0.11 1.53 4.05 -4.97 -0.02 1.51 16 5 N -0.53 -7.91 5.01 -237.62 -1.19 -9.10 16 6 C 0.05 0.82 6.03 -3.73 -0.02 0.80 16 7 C -0.09 -1.62 4.15 -27.95 -0.12 -1.73 16 8 C -0.19 -4.07 5.11 -103.92 -0.53 -4.60 16 9 C 0.11 2.85 5.58 -106.74 -0.60 2.26 16 10 C -0.46 -11.49 8.12 -37.74 -0.31 -11.80 16 11 H 0.08 1.86 6.99 -52.49 -0.37 1.49 16 12 C 0.08 1.85 5.14 -17.34 -0.09 1.76 16 13 N -0.79 -19.96 10.97 55.55 0.61 -19.35 16 14 Si 0.90 18.11 29.59 -169.99 -5.03 13.08 16 15 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 16 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 17 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 18 C -0.17 -4.17 8.68 -38.93 -0.34 -4.50 16 19 C -0.10 -2.40 10.02 -39.75 -0.40 -2.80 16 20 C -0.23 -4.94 9.65 -39.17 -0.38 -5.32 16 21 C -0.09 -1.82 5.19 -104.66 -0.54 -2.36 16 22 C 0.09 1.59 5.42 -5.15 -0.03 1.57 16 23 C -0.20 -2.96 9.38 -39.98 -0.37 -3.34 16 24 C -0.09 -1.25 10.66 -39.09 -0.42 -1.67 16 25 C -0.07 -0.90 6.89 -81.99 -0.56 -1.47 16 26 C 0.56 6.91 8.29 34.06 0.28 7.19 16 27 O -0.52 -7.68 17.67 -19.36 -0.34 -8.02 16 28 O -0.52 -4.37 10.86 -41.02 -0.45 -4.82 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.09 0.76 6.15 -51.93 -0.32 0.44 16 31 H 0.08 0.69 7.04 -51.93 -0.37 0.33 16 32 H 0.08 1.36 5.91 -51.93 -0.31 1.05 16 33 H 0.08 0.95 7.08 -51.93 -0.37 0.58 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 1.18 8.05 -51.93 -0.42 0.76 16 36 H 0.05 0.93 7.07 -51.93 -0.37 0.56 16 37 H 0.07 1.41 7.35 -51.93 -0.38 1.03 16 38 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 39 H 0.12 3.04 6.18 -52.48 -0.32 2.72 16 40 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 41 H 0.09 1.66 8.06 -52.48 -0.42 1.23 16 42 H 0.08 1.33 6.00 -51.93 -0.31 1.02 16 43 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.15 2.20 8.06 -52.49 -0.42 1.78 16 45 H 0.15 1.88 8.06 -52.49 -0.42 1.46 16 46 H 0.41 1.56 9.11 45.56 0.42 1.97 16 LS Contribution 368.82 15.07 5.56 5.56 Total: -1.00 -29.21 368.82 -10.70 -39.91 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -5.21 Total: 10.63 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: -4.29 Total: -22.42 kcal Atomic # 7 Polarization: -32.97 SS G_CDS: -0.95 Total: -33.92 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: -0.79 Total: -12.84 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.03 Total: 13.08 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.21 -10.70 -39.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600914572.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.022 kcal (2) G-P(sol) polarization free energy of solvation -29.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds