Wall clock time and date at job start Sat Apr 11 2020 06:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34961 * 125.63367 * 2 1 4 4 C 1.50699 * 125.50956 * 359.95675 * 3 2 1 5 5 N 1.46904 * 109.47168 * 275.00897 * 4 3 2 6 6 C 1.47172 * 111.00034 * 169.99982 * 5 4 3 7 7 C 1.52893 * 108.45918 * 52.33706 * 6 5 4 8 8 C 1.50683 * 109.98749 * 50.24903 * 7 6 5 9 9 C 1.41114 * 118.49301 * 163.29993 * 8 7 6 10 10 C 1.41397 * 120.08202 * 359.57957 * 9 8 7 11 11 H 1.07998 * 119.99996 * 25.68392 * 10 9 8 12 12 C 1.39947 * 120.00202 * 205.39910 * 10 9 8 13 13 N 1.30833 * 119.99760 * 17.40381 * 12 10 9 14 14 Si 1.86797 * 120.00176 * 197.40225 * 12 10 9 15 15 H 1.48508 * 109.47036 * 90.00374 * 14 12 10 16 16 H 1.48500 * 109.47042 * 210.00020 * 14 12 10 17 17 H 1.48494 * 109.47381 * 330.00209 * 14 12 10 18 18 C 1.40528 * 119.83911 * 179.85623 * 9 8 7 19 19 C 1.37646 * 119.53846 * 359.53633 * 18 9 8 20 20 C 1.38380 * 120.14047 * 0.55232 * 19 18 9 21 21 C 1.37201 * 121.80994 * 343.09517 * 8 7 6 22 22 C 1.46616 * 110.99765 * 292.96027 * 5 4 3 23 23 C 1.35487 * 108.98424 * 180.22838 * 3 2 1 24 24 C 1.39797 * 107.84395 * 359.63234 * 23 3 2 25 25 C 1.37700 * 125.63804 * 179.97438 * 2 1 3 26 26 C 1.46492 * 126.26137 * 0.02562 * 25 2 1 27 27 O 1.21624 * 120.00089 * 180.02562 * 26 25 2 28 28 O 1.34894 * 120.00142 * 359.97438 * 26 25 2 29 29 H 1.08999 * 109.47018 * 90.00664 * 1 2 3 30 30 H 1.09006 * 109.46796 * 210.00458 * 1 2 3 31 31 H 1.08994 * 109.47006 * 330.00381 * 1 2 3 32 32 H 1.08992 * 109.47540 * 155.00271 * 4 3 2 33 33 H 1.09004 * 109.46944 * 34.99842 * 4 3 2 34 34 H 1.09003 * 109.63592 * 292.64631 * 6 5 4 35 35 H 1.08998 * 109.63965 * 172.03171 * 6 5 4 36 36 H 1.09003 * 109.38571 * 290.09557 * 7 6 5 37 37 H 1.09005 * 109.38682 * 170.41023 * 7 6 5 38 38 H 0.96996 * 119.99880 * 179.97438 * 13 12 10 39 39 H 1.08007 * 120.23221 * 179.75952 * 18 9 8 40 40 H 1.08004 * 119.92667 * 180.27511 * 19 18 9 41 41 H 1.08005 * 119.54150 * 179.74135 * 20 19 18 42 42 H 1.09005 * 109.26219 * 49.40125 * 22 5 4 43 43 H 1.08996 * 109.26586 * 168.89505 * 22 5 4 44 44 H 1.08000 * 126.07823 * 179.74816 * 23 3 2 45 45 H 1.07995 * 126.51653 * 180.14472 * 24 23 3 46 46 H 0.96698 * 117.00026 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2513 1.0969 0.0000 4 6 1.7642 2.5230 -0.0009 5 7 1.4924 2.9467 -1.3810 6 6 0.7945 4.2422 -1.4072 7 6 1.5899 5.2378 -0.5623 8 6 3.0394 5.2198 -0.9737 9 6 3.8641 6.2954 -0.5809 10 6 3.3251 7.3628 0.1737 11 1 2.4561 7.2008 0.7941 12 6 3.9213 8.6278 0.1214 13 7 4.7420 8.9243 -0.8535 14 14 3.5454 9.8930 1.4432 15 1 4.5210 9.7531 2.5541 16 1 3.6457 11.2573 0.8653 17 1 2.1710 9.6745 1.9610 18 6 5.2209 6.3060 -0.9465 19 6 5.7348 5.2592 -1.6778 20 6 4.9168 4.2104 -2.0592 21 6 3.5696 4.1903 -1.7096 22 6 2.7315 3.0225 -2.1611 23 6 3.5494 0.7087 -0.0051 24 6 3.5785 -0.6889 0.0001 25 6 2.2673 -1.1191 0.0005 26 6 1.8122 -2.5115 0.0006 27 8 2.6244 -3.4168 0.0015 28 8 0.4923 -2.7897 0.0007 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5137 32 1 2.5278 3.1681 0.4335 33 1 0.8498 2.5950 0.5879 34 1 -0.2068 4.1273 -0.9921 35 1 0.7296 4.6027 -2.4338 36 1 1.5091 4.9650 0.4899 37 1 1.1852 6.2395 -0.7069 38 1 5.1550 9.8012 -0.8900 39 1 5.8569 7.1279 -0.6525 40 1 6.7778 5.2588 -1.9584 41 1 5.3292 3.3960 -2.6366 42 1 3.2976 2.1006 -2.0273 43 1 2.4855 3.1436 -3.2160 44 1 4.4088 1.3628 -0.0102 45 1 4.4597 -1.3133 0.0002 46 1 0.2404 -3.7233 0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600914572.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:32 Heat of formation + Delta-G solvation = -36.610675 kcal Electronic energy + Delta-G solvation = -29584.191224 eV Core-core repulsion = 25631.117233 eV Total energy + Delta-G solvation = -3953.073991 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.63388 -40.96336 -40.46524 -37.92733 -37.12408 -35.48783 -33.84775 -33.41896 -32.21990 -30.93826 -29.98876 -27.83172 -27.34148 -26.96966 -25.04568 -24.05136 -23.19021 -22.31532 -21.36136 -20.70735 -19.70527 -19.06913 -18.80478 -18.21277 -17.37700 -17.07768 -16.73658 -16.48887 -16.09069 -15.99659 -15.46737 -15.31721 -14.99120 -14.95016 -14.53689 -14.41931 -14.32657 -13.99673 -13.75751 -13.50329 -13.18125 -13.16187 -12.97351 -12.93428 -12.85283 -12.74167 -12.60343 -12.57188 -12.37008 -12.13624 -12.03238 -11.89595 -11.80008 -11.54172 -11.02586 -10.95259 -9.70460 -9.37446 -9.17706 -9.10956 -8.98607 -8.58906 -6.28820 0.17732 1.00545 1.11477 1.37729 1.49587 1.52905 1.56446 1.75493 2.13505 2.16404 2.20145 2.75936 3.16524 3.71352 3.72492 3.97988 4.06739 4.13030 4.21174 4.32180 4.39047 4.46596 4.52856 4.60767 4.62313 4.65532 4.70080 4.80415 4.82032 4.89624 4.94632 5.06323 5.09614 5.17949 5.19581 5.24863 5.30774 5.39464 5.50176 5.52326 5.75208 5.80450 5.94536 6.01978 6.05680 6.12547 6.22548 6.23915 6.30566 6.42960 6.75643 6.96376 6.99773 7.12051 8.36503 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020034 B = 0.002796 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.312447 B =10012.051030 C =10508.799125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.397 5.397 3 C 0.085 3.915 4 C 0.114 3.886 5 N -0.511 5.511 6 C 0.062 3.938 7 C -0.083 4.083 8 C -0.190 4.190 9 C 0.081 3.919 10 C -0.487 4.487 11 H 0.080 0.920 12 C 0.034 3.966 13 N -0.829 5.829 14 Si 0.975 3.025 15 H -0.267 1.267 16 H -0.273 1.273 17 H -0.254 1.254 18 C -0.199 4.199 19 C -0.115 4.115 20 C -0.234 4.234 21 C -0.087 4.087 22 C 0.101 3.899 23 C -0.219 4.219 24 C -0.106 4.106 25 C -0.073 4.073 26 C 0.567 3.433 27 O -0.546 6.546 28 O -0.505 6.505 29 H 0.087 0.913 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.053 0.947 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.071 0.929 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.284 0.716 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.108 0.892 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.137 0.863 45 H 0.152 0.848 46 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.649 -14.796 2.175 18.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.071 5.071 3 C -0.036 4.036 4 C -0.014 4.014 5 N -0.232 5.232 6 C -0.066 4.066 7 C -0.122 4.122 8 C -0.192 4.192 9 C 0.079 3.921 10 C -0.517 4.517 11 H 0.098 0.902 12 C -0.180 4.180 13 N -0.456 5.456 14 Si 0.796 3.204 15 H -0.192 1.192 16 H -0.197 1.197 17 H -0.177 1.177 18 C -0.218 4.218 19 C -0.133 4.133 20 C -0.253 4.253 21 C -0.089 4.089 22 C -0.027 4.027 23 C -0.243 4.243 24 C -0.132 4.132 25 C -0.183 4.183 26 C 0.414 3.586 27 O -0.437 6.437 28 O -0.319 6.319 29 H 0.106 0.894 30 H 0.125 0.875 31 H 0.118 0.882 32 H 0.071 0.929 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.095 0.905 39 H 0.111 0.889 40 H 0.118 0.882 41 H 0.127 0.873 42 H 0.103 0.897 43 H 0.098 0.902 44 H 0.155 0.845 45 H 0.170 0.830 46 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges -11.984 -14.879 1.848 19.194 hybrid contribution 1.268 1.153 0.660 1.836 sum -10.716 -13.727 2.508 17.594 Atomic orbital electron populations 1.22488 0.74109 1.05921 1.05100 1.43921 1.07894 1.03838 1.51407 1.20360 0.90337 0.88844 1.04028 1.20641 1.01568 0.87983 0.91240 1.62837 1.21078 1.28309 1.11013 1.22269 0.97405 0.86484 1.00441 1.20669 0.92132 1.00162 0.99197 1.19655 0.95671 0.97651 1.06223 1.17907 0.91393 0.92321 0.90456 1.19768 1.12964 0.94071 1.24894 0.90177 1.26724 0.93165 1.01367 0.96776 1.69910 1.24522 1.22759 1.28402 0.85308 0.80030 0.76666 0.78378 1.19226 1.19741 1.17733 1.21223 0.96095 0.98901 1.05599 1.20847 0.98445 0.94954 0.99100 1.20593 0.94359 1.00561 1.09828 1.20020 0.94496 0.96289 0.98084 1.21001 0.88994 0.95186 0.97513 1.20813 0.96157 0.94807 1.12497 1.21425 0.94816 0.94849 1.02119 1.19348 0.90946 0.84431 1.23551 1.19308 0.80599 0.87169 0.71504 1.90934 1.56137 1.47380 1.49284 1.84575 1.24058 1.37794 1.85515 0.89405 0.87517 0.88182 0.92884 0.87915 0.87767 0.90996 0.92311 0.92487 0.90544 0.88934 0.88244 0.87347 0.89706 0.90190 0.84500 0.83048 0.70384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.92 10.34 127.77 1.32 2.24 16 2 N -0.40 -8.88 3.15 -520.20 -1.64 -10.52 16 3 C 0.09 2.21 5.67 41.44 0.23 2.45 16 4 C 0.11 2.97 4.05 85.56 0.35 3.32 16 5 N -0.51 -13.91 5.01 -905.68 -4.54 -18.44 16 6 C 0.06 1.69 6.03 86.22 0.52 2.21 16 7 C -0.08 -2.99 4.15 29.81 0.12 -2.87 16 8 C -0.19 -8.42 5.11 -19.41 -0.10 -8.52 16 9 C 0.08 4.23 5.58 -21.24 -0.12 4.11 16 10 C -0.49 -25.14 8.12 23.46 0.19 -24.95 16 11 H 0.08 3.93 6.99 -2.91 -0.02 3.91 16 12 C 0.03 1.69 5.14 85.26 0.44 2.12 16 13 N -0.83 -43.65 10.97 21.83 0.24 -43.41 16 14 Si 0.97 37.83 29.59 68.60 2.03 39.86 16 15 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 16 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 17 H -0.25 -9.38 7.11 99.48 0.71 -8.68 16 18 C -0.20 -10.53 8.68 22.69 0.20 -10.34 16 19 C -0.12 -5.43 10.02 22.16 0.22 -5.20 16 20 C -0.23 -9.96 9.65 22.53 0.22 -9.74 16 21 C -0.09 -3.53 5.19 -19.89 -0.10 -3.64 16 22 C 0.10 3.24 5.42 85.60 0.46 3.71 16 23 C -0.22 -6.21 9.38 22.01 0.21 -6.00 16 24 C -0.11 -2.86 10.66 22.59 0.24 -2.62 16 25 C -0.07 -1.82 6.89 40.32 0.28 -1.54 16 26 C 0.57 12.74 8.29 69.97 0.58 13.32 16 27 O -0.55 -15.45 17.67 19.43 0.34 -15.10 16 28 O -0.50 -6.68 10.86 -58.08 -0.63 -7.31 16 29 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.11 1.28 6.15 -2.38 -0.01 1.26 16 31 H 0.10 1.17 7.04 -2.39 -0.02 1.15 16 32 H 0.05 1.73 5.91 -2.39 -0.01 1.71 16 33 H 0.10 2.15 7.08 -2.38 -0.02 2.14 16 34 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.07 2.06 8.05 -2.39 -0.02 2.04 16 36 H 0.06 2.02 7.07 -2.39 -0.02 2.01 16 37 H 0.06 2.22 7.35 -2.38 -0.02 2.20 16 38 H 0.28 13.66 8.30 -92.71 -0.77 12.89 16 39 H 0.09 5.23 6.18 -2.91 -0.02 5.21 16 40 H 0.10 4.25 8.06 -2.91 -0.02 4.23 16 41 H 0.11 4.07 8.06 -2.91 -0.02 4.05 16 42 H 0.08 2.68 6.00 -2.38 -0.01 2.67 16 43 H 0.08 2.49 8.14 -2.39 -0.02 2.48 16 44 H 0.14 4.13 8.06 -2.91 -0.02 4.11 16 45 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 46 H 0.43 1.66 9.11 -74.06 -0.67 0.99 16 Total: -1.00 -65.81 368.82 1.42 -64.39 By element: Atomic # 1 Polarization: 32.12 SS G_CDS: 0.36 Total: 32.48 kcal Atomic # 6 Polarization: -47.20 SS G_CDS: 5.26 Total: -41.94 kcal Atomic # 7 Polarization: -66.44 SS G_CDS: -5.93 Total: -72.37 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.29 Total: -22.42 kcal Atomic # 14 Polarization: 37.83 SS G_CDS: 2.03 Total: 39.86 kcal Total: -65.81 1.42 -64.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600914572.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.776 kcal (2) G-P(sol) polarization free energy of solvation -65.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds