Wall clock time and date at job start Sat Apr 11 2020 06:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46902 * 109.47086 * 2 1 4 4 C 1.46895 * 110.99911 * 164.38767 * 3 2 1 5 5 C 1.53001 * 109.47169 * 195.39390 * 4 3 2 6 6 N 1.46501 * 109.46968 * 174.34009 * 5 4 3 7 7 S 1.65605 * 119.99573 * 164.72824 * 6 5 4 8 8 O 1.42105 * 106.39780 * 178.53560 * 7 6 5 9 9 O 1.42099 * 106.40394 * 311.45435 * 7 6 5 10 10 C 1.76204 * 107.22015 * 64.99927 * 7 6 5 11 11 C 1.38633 * 119.74748 * 269.72920 * 10 7 6 12 12 C 1.37617 * 120.24864 * 179.72298 * 11 10 7 13 13 C 1.40720 * 119.74200 * 0.56349 * 12 11 10 14 14 C 1.41395 * 120.24570 * 179.68039 * 13 12 11 15 15 H 1.07993 * 120.00254 * 214.07201 * 14 13 12 16 16 C 1.39947 * 119.99446 * 34.07163 * 14 13 12 17 17 N 1.30821 * 120.00404 * 5.67572 * 16 14 13 18 18 Si 1.86805 * 119.99654 * 185.68081 * 16 14 13 19 19 H 1.48497 * 109.47045 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47184 * 119.99963 * 18 16 14 21 21 H 1.48500 * 109.46747 * 239.99654 * 18 16 14 22 22 C 1.40716 * 119.51104 * 359.70738 * 13 12 11 23 23 C 1.37619 * 119.74621 * 0.02562 * 22 13 12 24 24 C 1.46904 * 111.00322 * 288.34735 * 3 2 1 25 25 C 1.53003 * 109.47030 * 147.52469 * 24 3 2 26 26 C 1.52990 * 109.47077 * 267.52498 * 24 3 2 27 27 H 1.08999 * 109.47225 * 185.09937 * 1 2 3 28 28 H 1.08997 * 109.47148 * 305.09995 * 1 2 3 29 29 H 1.09004 * 109.47332 * 65.10006 * 1 2 3 30 30 H 1.09004 * 109.46746 * 240.00584 * 2 1 3 31 31 H 1.08995 * 109.47523 * 120.00662 * 2 1 3 32 32 H 1.09004 * 109.46607 * 75.40167 * 4 3 2 33 33 H 1.08996 * 109.47419 * 315.39732 * 4 3 2 34 34 H 1.08998 * 109.47059 * 54.33606 * 5 4 3 35 35 H 1.09002 * 109.47032 * 294.34079 * 5 4 3 36 36 H 0.96996 * 120.00313 * 345.00069 * 6 5 4 37 37 H 1.08003 * 119.87146 * 359.97128 * 11 10 7 38 38 H 1.07993 * 120.12813 * 180.27344 * 12 11 10 39 39 H 0.96999 * 120.00045 * 180.02562 * 17 16 14 40 40 H 1.08001 * 120.12723 * 179.97438 * 22 13 12 41 41 H 1.07996 * 119.87450 * 179.97438 * 23 22 13 42 42 H 1.09000 * 109.46583 * 27.52464 * 24 3 2 43 43 H 1.08997 * 109.46879 * 66.32612 * 25 24 3 44 44 H 1.08999 * 109.46776 * 186.32559 * 25 24 3 45 45 H 1.09007 * 109.46924 * 306.32403 * 25 24 3 46 46 H 1.09001 * 109.47321 * 63.12962 * 26 24 3 47 47 H 1.08998 * 109.47304 * 183.13555 * 26 24 3 48 48 H 1.09000 * 109.47335 * 303.13674 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4404 1.4411 0.3691 5 6 3.8168 2.8790 0.7319 6 7 5.1946 2.9126 1.2287 7 16 5.9997 4.3555 1.3397 8 8 7.2803 4.0598 1.8800 9 8 5.8148 5.0150 0.0947 10 6 5.1628 5.3283 2.5472 11 6 4.1340 6.1722 2.1581 12 6 3.4696 6.9323 3.0933 13 6 3.8461 6.8594 4.4473 14 6 3.1752 7.6408 5.4161 15 1 3.7172 8.0311 6.2647 16 6 1.8087 7.9082 5.2752 17 7 1.1281 7.3455 4.3101 18 14 0.9567 9.0688 6.4654 19 1 1.9406 9.5691 7.4588 20 1 0.3840 10.2150 5.7147 21 1 -0.1320 8.3445 7.1691 22 6 4.8955 6.0036 4.8298 23 6 5.5421 5.2485 3.8782 24 6 1.7882 2.0253 -1.3017 25 6 1.5228 3.5180 -1.0958 26 6 3.0234 1.8442 -2.1860 27 1 -0.3633 -1.0236 0.0913 28 1 -0.3633 0.5909 0.8408 29 1 -0.3634 0.4327 -0.9322 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 4.0478 1.1079 -0.4725 33 1 3.6192 0.7915 1.2259 34 1 3.1425 3.2469 1.5052 35 1 3.7340 3.5104 -0.1527 36 1 5.6365 2.0893 1.4889 37 1 3.8503 6.2303 1.1176 38 1 2.6656 7.5858 2.7886 39 1 0.1811 7.5312 4.2122 40 1 5.1928 5.9401 5.8661 41 1 6.3481 4.5912 4.1695 42 1 0.9254 1.5660 -1.7841 43 1 2.4250 3.9986 -0.7175 44 1 1.2409 3.9714 -2.0461 45 1 0.7135 3.6474 -0.3771 46 1 3.1800 0.7828 -2.3785 47 1 2.8737 2.3665 -3.1309 48 1 3.8968 2.2540 -1.6787 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647150191.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:40 Heat of formation + Delta-G solvation = -74.905158 kcal Electronic energy + Delta-G solvation = -28361.369202 eV Core-core repulsion = 24542.078588 eV Total energy + Delta-G solvation = -3819.290614 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.13643 -39.39003 -38.15498 -36.80753 -36.13187 -35.70380 -33.62333 -32.03285 -31.32357 -31.29641 -28.21350 -28.03706 -27.58456 -23.66516 -23.33674 -23.12775 -22.93060 -20.88022 -20.02705 -19.38231 -18.62864 -18.15006 -17.51980 -17.28991 -17.11339 -16.44168 -15.82796 -15.72717 -15.44648 -15.14760 -15.09673 -14.92539 -14.23739 -14.16863 -14.07137 -13.90018 -13.71807 -13.57295 -13.41877 -13.17277 -13.10775 -13.02303 -12.88863 -12.85705 -12.83194 -12.62566 -12.51198 -12.23071 -12.12924 -11.95312 -11.79965 -11.73344 -11.57387 -11.38922 -11.31235 -11.21394 -10.33095 -9.69184 -9.53466 -9.18805 -8.75719 -6.64746 -0.32895 0.46195 1.03782 1.37934 1.41929 1.53385 2.14837 2.20233 2.56838 2.90371 3.00993 3.50457 3.58516 3.84172 3.97423 4.08744 4.21984 4.27626 4.29553 4.32363 4.38062 4.49281 4.52712 4.55885 4.69190 4.75143 4.84457 4.87956 4.89556 4.97054 4.98270 5.03327 5.06524 5.10858 5.17168 5.18426 5.23316 5.36452 5.42942 5.52127 5.55484 5.57124 5.73750 5.95578 6.12403 6.18150 6.23883 6.26194 6.51686 6.72532 6.80638 8.19624 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009968 B = 0.003705 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2808.305121 B = 7556.237218 C = 9410.804351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.052 3.948 3 N -0.547 5.547 4 C 0.047 3.953 5 C 0.114 3.886 6 N -1.109 6.109 7 S 2.728 3.272 8 O -0.999 6.999 9 O -1.000 7.000 10 C -0.785 4.785 11 C -0.021 4.021 12 C -0.192 4.192 13 C 0.116 3.884 14 C -0.479 4.479 15 H 0.088 0.912 16 C 0.032 3.968 17 N -0.813 5.813 18 Si 0.992 3.008 19 H -0.256 1.256 20 H -0.263 1.263 21 H -0.264 1.264 22 C -0.248 4.248 23 C -0.007 4.007 24 C 0.074 3.926 25 C -0.156 4.156 26 C -0.187 4.187 27 H 0.072 0.928 28 H 0.049 0.951 29 H 0.054 0.946 30 H 0.045 0.955 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.057 0.943 35 H 0.080 0.920 36 H 0.424 0.576 37 H 0.115 0.885 38 H 0.109 0.891 39 H 0.294 0.706 40 H 0.113 0.887 41 H 0.128 0.872 42 H 0.090 0.910 43 H 0.051 0.949 44 H 0.067 0.933 45 H 0.053 0.947 46 H 0.064 0.936 47 H 0.068 0.932 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.018 -13.043 -8.485 15.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.076 4.076 3 N -0.272 5.272 4 C -0.083 4.083 5 C -0.012 4.012 6 N -0.870 5.870 7 S 2.822 3.178 8 O -0.990 6.990 9 O -0.990 6.990 10 C -0.878 4.878 11 C -0.041 4.041 12 C -0.212 4.212 13 C 0.113 3.887 14 C -0.507 4.507 15 H 0.106 0.894 16 C -0.184 4.184 17 N -0.438 5.438 18 Si 0.812 3.188 19 H -0.179 1.179 20 H -0.187 1.187 21 H -0.188 1.188 22 C -0.269 4.269 23 C -0.026 4.026 24 C -0.034 4.034 25 C -0.214 4.214 26 C -0.245 4.245 27 H 0.091 0.909 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.106 0.894 34 H 0.076 0.924 35 H 0.098 0.902 36 H 0.260 0.740 37 H 0.133 0.867 38 H 0.127 0.873 39 H 0.105 0.895 40 H 0.131 0.869 41 H 0.146 0.854 42 H 0.108 0.892 43 H 0.069 0.931 44 H 0.086 0.914 45 H 0.072 0.928 46 H 0.083 0.917 47 H 0.087 0.913 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.877 -12.436 -8.797 15.502 hybrid contribution -0.399 0.107 0.640 0.762 sum -3.276 -12.329 -8.156 15.141 Atomic orbital electron populations 1.21779 0.94496 1.02073 1.01899 1.22139 0.96444 0.87605 1.01393 1.62084 1.16838 1.18351 1.29905 1.22353 0.89213 0.95024 1.01667 1.21609 0.80681 0.99733 0.99185 1.55236 1.25146 1.24600 1.82052 1.00252 0.72131 0.72457 0.72916 1.93471 1.39658 1.84918 1.80916 1.93463 1.86823 1.75282 1.43404 1.29755 1.20622 1.25414 1.11988 1.20476 0.92262 0.93149 0.98227 1.21352 1.02741 1.04039 0.93070 1.18233 0.89490 0.88106 0.92876 1.20155 0.94894 1.27787 1.07847 0.89388 1.26910 0.98048 0.95899 0.97575 1.69824 1.10499 1.34664 1.28795 0.84992 0.78212 0.77615 0.77966 1.17895 1.18743 1.18827 1.21404 1.03736 1.03096 0.98620 1.20502 0.95296 0.95501 0.91326 1.21770 0.98250 0.95261 0.88095 1.22130 1.01918 0.95483 1.01869 1.22511 0.99027 1.02223 1.00743 0.90910 0.93202 0.92702 0.93710 0.90436 0.91464 0.89358 0.92412 0.90181 0.73958 0.86661 0.87335 0.89482 0.86924 0.85373 0.89162 0.93051 0.91387 0.92830 0.91723 0.91280 0.92170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.90 71.98 0.71 -1.52 16 2 C 0.05 0.84 5.61 86.30 0.48 1.32 16 3 N -0.55 -11.38 4.33 -870.99 -3.77 -15.15 16 4 C 0.05 0.98 4.60 86.30 0.40 1.37 16 5 C 0.11 3.14 5.09 86.38 0.44 3.58 16 6 N -1.11 -30.98 6.00 -187.48 -1.12 -32.10 16 7 S 2.73 100.57 5.73 -56.49 -0.32 100.24 16 8 O -1.00 -39.93 17.26 -128.00 -2.21 -42.14 16 9 O -1.00 -40.99 16.72 -128.00 -2.14 -43.13 16 10 C -0.79 -34.22 5.97 22.46 0.13 -34.08 16 11 C -0.02 -0.99 9.49 22.22 0.21 -0.78 16 12 C -0.19 -9.92 8.63 22.73 0.20 -9.72 16 13 C 0.12 6.09 5.50 -21.29 -0.12 5.98 16 14 C -0.48 -24.42 9.05 23.46 0.21 -24.20 16 15 H 0.09 4.27 7.85 -2.91 -0.02 4.25 16 16 C 0.03 1.54 5.31 85.26 0.45 1.99 16 17 N -0.81 -40.20 10.96 21.83 0.24 -39.96 16 18 Si 0.99 35.73 29.56 68.60 2.03 37.76 16 19 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 20 H -0.26 -9.11 7.11 99.48 0.71 -8.40 16 21 H -0.26 -9.11 7.11 99.48 0.71 -8.41 16 22 C -0.25 -11.94 9.80 22.73 0.22 -11.72 16 23 C -0.01 -0.29 9.49 22.22 0.21 -0.08 16 24 C 0.07 1.46 2.64 44.91 0.12 1.58 16 25 C -0.16 -3.70 9.04 71.98 0.65 -3.04 16 26 C -0.19 -3.38 7.90 71.98 0.57 -2.81 16 27 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.05 0.82 6.73 -2.38 -0.02 0.80 16 30 H 0.04 0.63 7.89 -2.39 -0.02 0.61 16 31 H 0.08 1.19 7.74 -2.39 -0.02 1.17 16 32 H 0.07 1.24 5.51 -2.39 -0.01 1.23 16 33 H 0.09 1.64 7.74 -2.39 -0.02 1.62 16 34 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.08 2.33 3.88 -2.39 -0.01 2.32 16 36 H 0.42 9.21 8.65 -96.75 -0.84 8.37 16 37 H 0.12 4.99 7.59 -2.91 -0.02 4.97 16 38 H 0.11 5.80 6.46 -2.91 -0.02 5.78 16 39 H 0.29 13.02 8.30 -92.71 -0.77 12.25 16 40 H 0.11 4.98 8.06 -2.91 -0.02 4.96 16 41 H 0.13 4.98 7.60 -2.91 -0.02 4.96 16 42 H 0.09 1.55 6.24 -2.39 -0.01 1.54 16 43 H 0.05 1.40 4.79 -2.39 -0.01 1.39 16 44 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.05 1.37 8.14 -2.38 -0.02 1.36 16 46 H 0.06 0.99 7.89 -2.39 -0.02 0.97 16 47 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 48 H 0.06 1.26 4.94 -2.39 -0.01 1.25 16 Total: -1.00 -63.54 386.61 -2.27 -65.81 By element: Atomic # 1 Polarization: 40.66 SS G_CDS: 0.14 Total: 40.80 kcal Atomic # 6 Polarization: -77.03 SS G_CDS: 4.90 Total: -72.14 kcal Atomic # 7 Polarization: -82.55 SS G_CDS: -4.65 Total: -87.21 kcal Atomic # 8 Polarization: -80.92 SS G_CDS: -4.35 Total: -85.27 kcal Atomic # 14 Polarization: 35.73 SS G_CDS: 2.03 Total: 37.76 kcal Atomic # 16 Polarization: 100.57 SS G_CDS: -0.32 Total: 100.24 kcal Total: -63.54 -2.27 -65.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647150191.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.096 kcal (2) G-P(sol) polarization free energy of solvation -63.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds