Wall clock time and date at job start Sat Apr 11 2020 06:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99719 * 2 1 4 4 C 1.47200 * 109.46983 * 180.02562 * 3 2 1 5 5 C 3.40062 * 161.18738 * 359.97438 * 2 1 3 6 6 C 4.78779 * 168.18293 * 359.97438 * 2 1 3 7 7 N 1.46894 * 109.47409 * 352.24287 * 6 5 4 8 8 C 1.46906 * 110.99667 * 66.05010 * 7 6 5 9 9 C 1.46901 * 111.00034 * 189.99856 * 7 6 5 10 10 C 1.53006 * 109.47026 * 169.14909 * 9 7 6 11 11 H 1.09000 * 109.86963 * 52.31420 * 10 9 7 12 12 C 1.54321 * 109.88320 * 291.13966 * 10 9 7 13 13 C 1.55154 * 102.94169 * 218.38932 * 12 10 9 14 14 C 1.54905 * 101.58157 * 35.50100 * 13 12 10 15 15 N 1.47018 * 109.88341 * 173.32923 * 10 9 7 16 16 C 1.34783 * 125.64810 * 298.32367 * 15 10 9 17 17 O 1.21284 * 119.99868 * 354.94731 * 16 15 10 18 18 C 1.50702 * 119.99848 * 174.93785 * 16 15 10 19 19 S 1.80998 * 109.46911 * 180.02562 * 18 16 15 20 20 C 1.76196 * 99.99964 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99854 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00232 * 180.02562 * 20 19 18 23 23 N 1.31629 * 120.00428 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99724 * 359.97438 * 22 20 19 25 25 H 1.48496 * 109.47480 * 90.00364 * 24 22 20 26 26 H 1.48505 * 109.47356 * 210.00217 * 24 22 20 27 27 H 1.48502 * 109.47301 * 330.00229 * 24 22 20 28 28 H 1.09002 * 109.47044 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47462 * 60.00069 * 1 2 3 30 30 H 1.09005 * 109.47107 * 299.99775 * 1 2 3 31 31 H 1.09001 * 109.46978 * 299.99977 * 3 2 1 32 32 H 1.09000 * 109.47177 * 60.00163 * 3 2 1 33 33 H 1.09005 * 109.47146 * 112.25090 * 6 5 4 34 34 H 1.09000 * 109.46849 * 232.24462 * 6 5 4 35 35 H 1.08997 * 109.47484 * 56.65607 * 8 7 6 36 36 H 1.09008 * 109.46712 * 176.65627 * 8 7 6 37 37 H 1.08995 * 109.46750 * 296.65254 * 8 7 6 38 38 H 1.08991 * 109.47683 * 289.15164 * 9 7 6 39 39 H 1.09004 * 109.46878 * 49.15427 * 9 7 6 40 40 H 1.09006 * 110.72037 * 336.75193 * 12 10 9 41 41 H 1.08999 * 110.71934 * 100.02427 * 12 10 9 42 42 H 1.09002 * 111.00233 * 277.42657 * 13 12 10 43 43 H 1.09006 * 111.03934 * 153.59163 * 13 12 10 44 44 H 1.08999 * 110.36891 * 204.15236 * 14 13 12 45 45 H 1.09001 * 110.46372 * 81.87880 * 14 13 12 46 46 H 1.08994 * 109.47111 * 300.00421 * 18 16 15 47 47 H 1.08995 * 109.46726 * 60.00423 * 18 16 15 48 48 H 0.97000 * 120.00178 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.4776 1.1893 -0.0006 5 6 4.6480 1.0966 -0.0005 6 6 6.1153 0.9805 -0.0004 7 7 6.4952 -0.4261 0.1865 8 6 6.0803 -1.2407 -0.9634 9 6 7.9385 -0.5539 0.4287 10 6 8.2550 -1.9801 0.8834 11 1 7.8345 -2.6960 0.1772 12 6 7.6730 -2.2234 2.2917 13 6 8.7670 -3.0850 2.9758 14 6 10.0600 -2.4833 2.3712 15 7 9.7108 -2.1643 0.9749 16 6 10.5817 -2.0596 -0.0484 17 8 10.1732 -1.8831 -1.1767 18 6 12.0630 -2.1617 0.2094 19 16 12.9608 -1.9820 -1.3519 20 6 14.6173 -2.1380 -0.7720 21 1 14.8088 -2.2951 0.2793 22 6 15.6760 -2.0589 -1.6660 23 7 16.9135 -2.1749 -1.2327 24 14 15.3446 -1.7880 -3.4843 25 1 15.3183 -0.3312 -3.7711 26 1 16.4181 -2.4306 -4.2843 27 1 14.0339 -2.3868 -3.8433 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 1.6885 1.8464 0.8900 33 1 6.5083 1.3398 -0.9516 34 1 6.5271 1.5791 0.8121 35 1 6.5141 -0.8300 -1.8751 36 1 6.4258 -2.2655 -0.8263 37 1 4.9932 -1.2313 -1.0419 38 1 8.4819 -0.3367 -0.4908 39 1 8.2405 0.1501 1.2042 40 1 7.5376 -1.2803 2.8213 41 1 6.7326 -2.7712 2.2310 42 1 8.6619 -4.1359 2.7063 43 1 8.7457 -2.9574 4.0582 44 1 10.8689 -3.2132 2.4026 45 1 10.3459 -1.5781 2.9070 46 1 12.3675 -1.3721 0.8962 47 1 12.2890 -3.1330 0.6492 48 1 17.6533 -2.1201 -1.8577 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674435365.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:47 Heat of formation + Delta-G solvation = -15.816154 kcal Electronic energy + Delta-G solvation = -26499.383481 eV Core-core repulsion = 22682.655159 eV Total energy + Delta-G solvation = -3816.728322 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.18658 -38.39922 -37.97662 -36.92029 -33.75490 -32.44520 -31.86410 -30.78943 -29.22844 -28.58132 -27.47373 -26.41182 -25.62332 -25.40893 -23.31702 -22.05112 -20.86654 -19.04038 -17.75929 -17.57994 -17.05290 -16.86866 -16.41500 -16.38762 -15.66105 -15.54109 -15.31572 -15.03086 -14.80399 -14.41787 -13.91902 -13.89716 -13.63109 -13.39928 -13.19490 -12.94181 -12.91997 -12.78762 -12.68089 -12.34463 -12.14301 -12.02137 -11.83199 -11.60031 -11.35060 -11.24210 -11.01652 -10.95153 -10.80087 -10.61902 -10.59309 -10.48257 -9.86374 -9.83128 -9.50505 -9.00820 -8.70389 -8.50435 -8.44739 -6.92428 -6.29299 -4.01046 2.00477 2.41641 2.68331 2.93222 3.17260 3.32467 3.49984 3.52287 3.58126 3.83810 4.19945 4.32217 4.39829 4.46093 4.68055 4.71176 4.76555 4.81292 4.88905 4.93048 4.97359 5.03547 5.09805 5.15981 5.17868 5.21222 5.23131 5.25440 5.36331 5.41124 5.50483 5.53528 5.60410 5.67151 5.74900 5.80265 5.82818 5.85729 5.95372 6.02424 6.13889 6.39057 6.61969 6.72286 6.79763 7.31097 7.61033 7.93741 8.41253 8.44200 9.16915 10.79902 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017946 B = 0.002030 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.818376 B =13792.097215 C =14861.468464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.182 3.818 4 C -0.193 4.193 5 C -0.130 4.130 6 C 0.163 3.837 7 N -0.532 5.532 8 C 0.020 3.980 9 C 0.043 3.957 10 C 0.143 3.857 11 H 0.077 0.923 12 C -0.112 4.112 13 C -0.136 4.136 14 C 0.099 3.901 15 N -0.621 5.621 16 C 0.547 3.453 17 O -0.518 6.518 18 C -0.118 4.118 19 S -0.143 6.143 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.880 5.880 24 Si 0.856 3.144 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.090 0.910 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.100 0.900 35 H 0.032 0.968 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.056 0.944 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.069 0.931 46 H 0.096 0.904 47 H 0.096 0.904 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.622 4.577 8.753 31.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.106 3.894 4 C -0.194 4.194 5 C -0.131 4.131 6 C 0.037 3.963 7 N -0.256 5.256 8 C -0.128 4.128 9 C -0.085 4.085 10 C 0.039 3.961 11 H 0.095 0.905 12 C -0.150 4.150 13 C -0.174 4.174 14 C -0.024 4.024 15 N -0.358 5.358 16 C 0.336 3.664 17 O -0.392 6.392 18 C -0.268 4.268 19 S 0.084 5.916 20 C -0.668 4.668 21 H 0.106 0.894 22 C -0.112 4.112 23 N -0.517 5.517 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 H 0.108 0.892 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.118 0.882 35 H 0.050 0.950 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.094 0.906 43 H 0.101 0.899 44 H 0.097 0.903 45 H 0.087 0.913 46 H 0.114 0.886 47 H 0.114 0.886 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -30.070 4.491 7.374 31.285 hybrid contribution 0.914 0.485 -0.101 1.040 sum -29.156 4.976 7.273 30.458 Atomic orbital electron populations 1.22794 0.80250 1.03278 1.00201 1.87991 1.20061 1.26881 1.95488 1.19005 0.83770 0.85391 1.01222 1.21560 0.92684 1.02480 1.02695 1.22086 0.93306 0.97513 1.00177 1.19030 0.84892 0.90466 1.01942 1.61899 1.15556 1.07350 1.40840 1.22492 1.01161 0.98258 0.90857 1.22505 0.86762 0.97561 1.01712 1.21455 0.80531 0.95955 0.98127 0.90506 1.22561 0.98153 1.00637 0.93674 1.22823 0.94243 0.99976 1.00354 1.22330 0.98119 1.00161 0.81765 1.48557 1.06590 1.71741 1.08955 1.19998 0.87467 0.75507 0.83457 1.90692 1.79350 1.47784 1.21386 1.23268 0.92991 1.05617 1.04963 1.84771 1.03221 1.95669 1.07989 1.22308 0.88701 1.57438 0.98399 0.89392 1.24702 0.94051 0.93299 0.99192 1.69936 0.98202 1.47810 1.35708 0.86742 0.80489 0.79918 0.84744 1.19235 1.19926 1.15945 0.89198 0.93755 0.93735 0.91050 0.90960 0.91962 0.88250 0.94973 0.90829 0.91214 0.92567 0.90398 0.90349 0.90025 0.90640 0.89857 0.90255 0.91266 0.88576 0.88599 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -3.58 10.66 -35.23 -0.38 -3.96 16 3 C 0.18 1.41 6.41 34.37 0.22 1.63 16 4 C -0.19 -2.05 13.73 -37.12 -0.51 -2.56 16 5 C -0.13 -1.43 12.50 -37.12 -0.46 -1.90 16 6 C 0.16 1.64 5.45 -6.62 -0.04 1.60 16 7 N -0.53 -5.90 4.57 -246.45 -1.13 -7.03 16 8 C 0.02 0.23 9.19 60.07 0.55 0.78 16 9 C 0.04 0.52 4.38 -3.82 -0.02 0.50 16 10 C 0.14 1.72 2.85 -66.95 -0.19 1.53 16 11 H 0.08 1.02 6.18 -51.93 -0.32 0.70 16 12 C -0.11 -1.01 6.32 -24.90 -0.16 -1.17 16 13 C -0.14 -1.11 7.08 -24.59 -0.17 -1.28 16 14 C 0.10 1.03 6.65 -2.53 -0.02 1.02 16 15 N -0.62 -8.60 3.06 -163.02 -0.50 -9.10 16 16 C 0.55 10.01 7.58 -10.98 -0.08 9.93 16 17 O -0.52 -11.20 15.03 5.55 0.08 -11.11 16 18 C -0.12 -2.33 5.25 36.01 0.19 -2.14 16 19 S -0.14 -3.64 18.55 -107.50 -1.99 -5.64 16 20 C -0.52 -15.04 10.04 30.94 0.31 -14.73 16 21 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 22 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 23 N -0.88 -26.55 13.97 55.49 0.78 -25.78 16 24 Si 0.86 21.86 27.74 -169.99 -4.71 17.14 16 25 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 28 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.04 0.17 8.14 -51.93 -0.42 -0.26 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 34 H 0.10 0.84 7.92 -51.93 -0.41 0.43 16 35 H 0.03 0.39 8.11 -51.93 -0.42 -0.03 16 36 H 0.07 0.84 6.10 -51.92 -0.32 0.53 16 37 H 0.07 0.80 7.40 -51.93 -0.38 0.41 16 38 H 0.06 0.85 6.82 -51.93 -0.35 0.49 16 39 H 0.08 0.85 7.75 -51.93 -0.40 0.45 16 40 H 0.08 0.67 7.74 -51.93 -0.40 0.27 16 41 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.08 0.82 7.51 -51.93 -0.39 0.43 16 45 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.10 1.78 8.14 -51.92 -0.42 1.36 16 47 H 0.10 1.78 7.76 -51.92 -0.40 1.37 16 48 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 407.62 15.07 6.14 6.14 Total: -1.00 -35.01 407.62 -9.10 -44.11 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -8.03 Total: -1.98 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: 0.64 Total: -2.80 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: -0.85 Total: -41.91 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -0.29 Total: -15.07 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.71 Total: 17.14 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.01 -9.10 -44.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674435365.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.292 kcal (2) G-P(sol) polarization free energy of solvation -35.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds