Wall clock time and date at job start Sat Apr 11 2020 06:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99719 * 2 1 4 4 C 1.47200 * 109.46983 * 180.02562 * 3 2 1 5 5 C 3.40062 * 161.18738 * 359.97438 * 2 1 3 6 6 C 4.78779 * 168.18293 * 359.97438 * 2 1 3 7 7 N 1.46894 * 109.47409 * 352.24287 * 6 5 4 8 8 C 1.46906 * 110.99667 * 66.05010 * 7 6 5 9 9 C 1.46901 * 111.00034 * 189.99856 * 7 6 5 10 10 C 1.53006 * 109.47026 * 169.14909 * 9 7 6 11 11 H 1.09000 * 109.86963 * 52.31420 * 10 9 7 12 12 C 1.54321 * 109.88320 * 291.13966 * 10 9 7 13 13 C 1.55154 * 102.94169 * 218.38932 * 12 10 9 14 14 C 1.54905 * 101.58157 * 35.50100 * 13 12 10 15 15 N 1.47018 * 109.88341 * 173.32923 * 10 9 7 16 16 C 1.34783 * 125.64810 * 298.32367 * 15 10 9 17 17 O 1.21284 * 119.99868 * 354.94731 * 16 15 10 18 18 C 1.50702 * 119.99848 * 174.93785 * 16 15 10 19 19 S 1.80998 * 109.46911 * 180.02562 * 18 16 15 20 20 C 1.76196 * 99.99964 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99854 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00232 * 180.02562 * 20 19 18 23 23 N 1.31629 * 120.00428 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99724 * 359.97438 * 22 20 19 25 25 H 1.48496 * 109.47480 * 90.00364 * 24 22 20 26 26 H 1.48505 * 109.47356 * 210.00217 * 24 22 20 27 27 H 1.48502 * 109.47301 * 330.00229 * 24 22 20 28 28 H 1.09002 * 109.47044 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47462 * 60.00069 * 1 2 3 30 30 H 1.09005 * 109.47107 * 299.99775 * 1 2 3 31 31 H 1.09001 * 109.46978 * 299.99977 * 3 2 1 32 32 H 1.09000 * 109.47177 * 60.00163 * 3 2 1 33 33 H 1.09005 * 109.47146 * 112.25090 * 6 5 4 34 34 H 1.09000 * 109.46849 * 232.24462 * 6 5 4 35 35 H 1.08997 * 109.47484 * 56.65607 * 8 7 6 36 36 H 1.09008 * 109.46712 * 176.65627 * 8 7 6 37 37 H 1.08995 * 109.46750 * 296.65254 * 8 7 6 38 38 H 1.08991 * 109.47683 * 289.15164 * 9 7 6 39 39 H 1.09004 * 109.46878 * 49.15427 * 9 7 6 40 40 H 1.09006 * 110.72037 * 336.75193 * 12 10 9 41 41 H 1.08999 * 110.71934 * 100.02427 * 12 10 9 42 42 H 1.09002 * 111.00233 * 277.42657 * 13 12 10 43 43 H 1.09006 * 111.03934 * 153.59163 * 13 12 10 44 44 H 1.08999 * 110.36891 * 204.15236 * 14 13 12 45 45 H 1.09001 * 110.46372 * 81.87880 * 14 13 12 46 46 H 1.08994 * 109.47111 * 300.00421 * 18 16 15 47 47 H 1.08995 * 109.46726 * 60.00423 * 18 16 15 48 48 H 0.97000 * 120.00178 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.4776 1.1893 -0.0006 5 6 4.6480 1.0966 -0.0005 6 6 6.1153 0.9805 -0.0004 7 7 6.4952 -0.4261 0.1865 8 6 6.0803 -1.2407 -0.9634 9 6 7.9385 -0.5539 0.4287 10 6 8.2550 -1.9801 0.8834 11 1 7.8345 -2.6960 0.1772 12 6 7.6730 -2.2234 2.2917 13 6 8.7670 -3.0850 2.9758 14 6 10.0600 -2.4833 2.3712 15 7 9.7108 -2.1643 0.9749 16 6 10.5817 -2.0596 -0.0484 17 8 10.1732 -1.8831 -1.1767 18 6 12.0630 -2.1617 0.2094 19 16 12.9608 -1.9820 -1.3519 20 6 14.6173 -2.1380 -0.7720 21 1 14.8088 -2.2951 0.2793 22 6 15.6760 -2.0589 -1.6660 23 7 16.9135 -2.1749 -1.2327 24 14 15.3446 -1.7880 -3.4843 25 1 15.3183 -0.3312 -3.7711 26 1 16.4181 -2.4306 -4.2843 27 1 14.0339 -2.3868 -3.8433 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 1.6885 1.8464 0.8900 33 1 6.5083 1.3398 -0.9516 34 1 6.5271 1.5791 0.8121 35 1 6.5141 -0.8300 -1.8751 36 1 6.4258 -2.2655 -0.8263 37 1 4.9932 -1.2313 -1.0419 38 1 8.4819 -0.3367 -0.4908 39 1 8.2405 0.1501 1.2042 40 1 7.5376 -1.2803 2.8213 41 1 6.7326 -2.7712 2.2310 42 1 8.6619 -4.1359 2.7063 43 1 8.7457 -2.9574 4.0582 44 1 10.8689 -3.2132 2.4026 45 1 10.3459 -1.5781 2.9070 46 1 12.3675 -1.3721 0.8962 47 1 12.2890 -3.1330 0.6492 48 1 17.6533 -2.1201 -1.8577 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674435365.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:46 Heat of formation + Delta-G solvation = -39.480770 kcal Electronic energy + Delta-G solvation = -26500.409655 eV Core-core repulsion = 22682.655159 eV Total energy + Delta-G solvation = -3817.754497 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.33779 -39.15615 -38.90108 -37.96337 -34.68829 -34.54374 -33.03343 -31.64829 -30.33207 -29.61435 -28.21902 -27.86482 -27.10677 -26.08199 -24.34114 -22.93672 -21.81734 -20.38679 -19.53141 -18.40702 -18.25235 -17.53961 -17.40861 -17.13833 -16.91415 -16.57390 -16.55599 -16.28941 -16.13265 -15.77552 -15.35861 -14.91230 -14.85338 -14.45462 -14.08443 -14.01561 -13.97991 -13.72330 -13.62348 -13.37273 -13.31271 -13.27626 -13.03768 -12.79061 -12.68931 -12.56976 -12.43894 -12.06083 -11.88140 -11.81216 -11.55252 -11.32827 -11.18671 -11.18604 -10.98515 -10.55485 -10.45343 -9.78356 -9.47155 -9.02142 -8.52905 -6.24073 0.94208 1.23351 1.29395 1.44175 1.50273 1.52140 1.63684 2.02957 2.23387 2.66237 2.85262 2.90624 2.95859 3.46292 3.51485 3.65664 3.81968 3.91254 4.12447 4.16162 4.21204 4.23677 4.25657 4.30281 4.38486 4.40762 4.45316 4.52113 4.53850 4.58085 4.61868 4.66893 4.68792 4.76168 4.86118 4.88913 4.91083 5.02911 5.07481 5.17989 5.35616 5.43203 5.69450 5.82201 5.84082 6.09903 6.14808 6.38045 6.52838 6.92221 7.05814 8.59438 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017946 B = 0.002030 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.818376 B =13792.097215 C =14861.468464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.418 6.418 3 C 0.176 3.824 4 C -0.198 4.198 5 C -0.156 4.156 6 C 0.163 3.837 7 N -0.527 5.527 8 C 0.027 3.973 9 C 0.052 3.948 10 C 0.138 3.862 11 H 0.061 0.939 12 C -0.102 4.102 13 C -0.124 4.124 14 C 0.087 3.913 15 N -0.612 5.612 16 C 0.547 3.453 17 O -0.560 6.560 18 C -0.102 4.102 19 S -0.175 6.175 20 C -0.529 4.529 21 H 0.063 0.937 22 C 0.048 3.952 23 N -0.915 5.915 24 Si 0.913 3.087 25 H -0.262 1.262 26 H -0.258 1.258 27 H -0.239 1.239 28 H 0.094 0.906 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.060 0.940 34 H 0.117 0.883 35 H 0.019 0.981 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.021 0.979 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.112 0.888 44 H 0.081 0.919 45 H 0.086 0.914 46 H 0.110 0.890 47 H 0.109 0.891 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.826 4.933 10.179 33.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.338 6.338 3 C 0.101 3.899 4 C -0.199 4.199 5 C -0.157 4.157 6 C 0.036 3.964 7 N -0.251 5.251 8 C -0.122 4.122 9 C -0.077 4.077 10 C 0.035 3.965 11 H 0.079 0.921 12 C -0.140 4.140 13 C -0.162 4.162 14 C -0.034 4.034 15 N -0.346 5.346 16 C 0.335 3.665 17 O -0.439 6.439 18 C -0.253 4.253 19 S 0.051 5.949 20 C -0.676 4.676 21 H 0.081 0.919 22 C -0.158 4.158 23 N -0.553 5.553 24 Si 0.735 3.265 25 H -0.187 1.187 26 H -0.182 1.182 27 H -0.163 1.163 28 H 0.113 0.887 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.078 0.922 34 H 0.135 0.865 35 H 0.037 0.963 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.039 0.961 39 H 0.111 0.889 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.094 0.906 43 H 0.131 0.869 44 H 0.099 0.901 45 H 0.105 0.895 46 H 0.128 0.872 47 H 0.127 0.873 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -32.299 4.841 8.855 33.839 hybrid contribution 1.462 0.369 -0.395 1.559 sum -30.836 5.211 8.460 32.397 Atomic orbital electron populations 1.22990 0.78311 1.04125 1.01584 1.87930 1.22275 1.27814 1.95793 1.19284 0.82118 0.85342 1.03170 1.22388 0.93834 1.01706 1.01974 1.22346 0.93830 0.98377 1.01169 1.19096 0.84819 0.89882 1.02556 1.61924 1.14701 1.08089 1.40359 1.22407 1.00970 0.98185 0.90603 1.22387 0.86890 0.97902 1.00474 1.21639 0.79241 0.95560 1.00076 0.92054 1.22534 0.98477 1.01575 0.91372 1.22822 0.92018 0.99542 1.01782 1.22700 0.99678 1.01308 0.79762 1.48525 1.07010 1.69626 1.09488 1.19660 0.87190 0.75796 0.83814 1.90677 1.79745 1.50206 1.23223 1.23216 0.93589 1.06877 1.01620 1.84704 1.01868 1.95848 1.12434 1.22439 0.90779 1.57023 0.97401 0.91921 1.25525 0.93905 0.93083 1.03250 1.70009 0.99097 1.48797 1.37383 0.85892 0.80512 0.80096 0.80019 1.18683 1.18209 1.16277 0.88720 0.92456 0.92235 0.89129 0.88774 0.92244 0.86478 0.96270 0.91048 0.91175 0.96059 0.88922 0.89185 0.89204 0.90585 0.86926 0.90088 0.89537 0.87187 0.87280 0.91337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.46 16 2 O -0.42 -7.23 10.66 -148.98 -1.59 -8.82 16 3 C 0.18 2.43 6.41 70.18 0.45 2.88 16 4 C -0.20 -4.02 13.73 31.12 0.43 -3.59 16 5 C -0.16 -3.34 12.50 31.12 0.39 -2.95 16 6 C 0.16 3.17 5.45 84.50 0.46 3.63 16 7 N -0.53 -11.37 4.57 -933.62 -4.27 -15.64 16 8 C 0.03 0.62 9.19 127.69 1.17 1.79 16 9 C 0.05 1.22 4.38 86.31 0.38 1.60 16 10 C 0.14 3.15 2.85 45.34 0.13 3.28 16 11 H 0.06 1.62 6.18 -2.39 -0.01 1.60 16 12 C -0.10 -1.52 6.32 31.78 0.20 -1.32 16 13 C -0.12 -1.57 7.08 31.98 0.23 -1.34 16 14 C 0.09 1.57 6.65 86.85 0.58 2.15 16 15 N -0.61 -16.15 3.06 -788.06 -2.42 -18.56 16 16 C 0.55 19.89 7.58 87.66 0.66 20.55 16 17 O -0.56 -24.70 15.03 -3.04 -0.05 -24.75 16 18 C -0.10 -3.99 5.25 71.24 0.37 -3.62 16 19 S -0.18 -9.00 18.55 -56.49 -1.05 -10.05 16 20 C -0.53 -31.02 10.04 67.95 0.68 -30.33 16 21 H 0.06 3.87 8.03 -2.91 -0.02 3.84 16 22 C 0.05 2.83 5.50 84.86 0.47 3.30 16 23 N -0.91 -55.78 13.97 21.65 0.30 -55.48 16 24 Si 0.91 45.35 27.74 68.60 1.90 47.25 16 25 H -0.26 -12.70 7.11 99.48 0.71 -11.99 16 26 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 27 H -0.24 -11.91 6.74 99.48 0.67 -11.24 16 28 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.06 0.32 8.14 -2.38 -0.02 0.30 16 31 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.06 1.19 8.09 -2.38 -0.02 1.17 16 34 H 0.12 1.81 7.92 -2.39 -0.02 1.80 16 35 H 0.02 0.48 8.11 -2.39 -0.02 0.46 16 36 H 0.07 1.67 6.10 -2.38 -0.01 1.66 16 37 H 0.07 1.62 7.40 -2.39 -0.02 1.60 16 38 H 0.02 0.65 6.82 -2.39 -0.02 0.64 16 39 H 0.09 1.87 7.75 -2.39 -0.02 1.85 16 40 H 0.09 1.20 7.74 -2.38 -0.02 1.18 16 41 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.11 0.87 8.14 -2.38 -0.02 0.85 16 44 H 0.08 1.47 7.51 -2.39 -0.02 1.46 16 45 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.11 3.98 8.14 -2.40 -0.02 3.96 16 47 H 0.11 3.96 7.76 -2.40 -0.02 3.94 16 48 H 0.28 15.62 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -77.32 407.62 1.59 -75.74 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 0.90 Total: 12.83 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: 7.85 Total: -2.52 kcal Atomic # 7 Polarization: -83.30 SS G_CDS: -6.38 Total: -89.68 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: -1.63 Total: -33.57 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.90 Total: 47.25 kcal Atomic # 16 Polarization: -9.00 SS G_CDS: -1.05 Total: -10.05 kcal Total: -77.32 1.59 -75.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674435365.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.255 kcal (2) G-P(sol) polarization free energy of solvation -77.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds