Wall clock time and date at job start Sat Apr 11 2020 06:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99504 * 2 1 4 4 C 1.47205 * 109.47108 * 179.97438 * 3 2 1 5 5 C 3.40061 * 161.18465 * 0.02562 * 2 1 3 6 6 C 4.78784 * 168.18213 * 0.02562 * 2 1 3 7 7 N 1.46900 * 109.46567 * 168.70550 * 6 5 4 8 8 C 1.46902 * 111.00033 * 293.94849 * 7 6 5 9 9 C 1.46903 * 110.99726 * 169.99912 * 7 6 5 10 10 C 1.52995 * 109.47263 * 196.04834 * 9 7 6 11 11 H 1.09004 * 109.87303 * 305.03263 * 10 9 7 12 12 C 1.54326 * 110.01264 * 66.13340 * 10 9 7 13 13 C 1.55154 * 102.94430 * 141.68242 * 12 10 9 14 14 C 1.55133 * 101.48423 * 324.33377 * 13 12 10 15 15 N 1.47022 * 109.88373 * 184.01829 * 10 9 7 16 16 C 1.34780 * 125.64789 * 61.45332 * 15 10 9 17 17 O 1.21286 * 119.99811 * 354.86680 * 16 15 10 18 18 C 1.50697 * 120.00110 * 174.59555 * 16 15 10 19 19 S 1.80994 * 109.47233 * 180.27215 * 18 16 15 20 20 C 1.76206 * 100.00303 * 179.97438 * 19 18 16 21 21 H 1.08002 * 119.99730 * 0.02562 * 20 19 18 22 22 C 1.38793 * 120.00287 * 180.02562 * 20 19 18 23 23 N 1.31624 * 120.00119 * 179.97438 * 22 20 19 24 24 Si 1.86807 * 119.99852 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47147 * 90.00196 * 24 22 20 26 26 H 1.48502 * 109.46772 * 209.99921 * 24 22 20 27 27 H 1.48501 * 109.47212 * 329.99553 * 24 22 20 28 28 H 1.09000 * 109.46963 * 60.00421 * 1 2 3 29 29 H 1.09004 * 109.46697 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47522 * 299.99812 * 1 2 3 31 31 H 1.08999 * 109.47406 * 59.99628 * 3 2 1 32 32 H 1.08999 * 109.47158 * 299.99570 * 3 2 1 33 33 H 1.08996 * 109.47271 * 48.71017 * 6 5 4 34 34 H 1.08999 * 109.47115 * 288.70509 * 6 5 4 35 35 H 1.08994 * 109.47608 * 291.02738 * 8 7 6 36 36 H 1.09004 * 109.46746 * 51.03361 * 8 7 6 37 37 H 1.09001 * 109.46692 * 171.02977 * 8 7 6 38 38 H 1.09005 * 109.47079 * 76.04600 * 9 7 6 39 39 H 1.09004 * 109.47401 * 316.05184 * 9 7 6 40 40 H 1.09000 * 110.71921 * 260.04611 * 12 10 9 41 41 H 1.09003 * 110.71594 * 23.14032 * 12 10 9 42 42 H 1.08998 * 111.00442 * 82.57395 * 13 12 10 43 43 H 1.08999 * 111.00403 * 206.38626 * 13 12 10 44 44 H 1.08993 * 110.49496 * 278.44928 * 14 13 12 45 45 H 1.09003 * 110.33886 * 156.05784 * 14 13 12 46 46 H 1.08997 * 109.47237 * 300.27267 * 18 16 15 47 47 H 1.08997 * 109.47055 * 60.26963 * 18 16 15 48 48 H 0.97001 * 120.00372 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.4776 1.1894 0.0006 5 6 4.6479 1.0968 0.0005 6 6 6.1154 0.9806 0.0004 7 7 6.7106 2.2959 -0.2708 8 6 6.3956 2.7453 -1.6335 9 6 8.1622 2.2732 -0.0464 10 6 8.6848 3.7074 0.0566 11 1 8.3942 4.2722 -0.8292 12 6 8.1183 4.3864 1.3214 13 6 9.3176 5.2288 1.8305 14 6 10.5145 4.3073 1.4770 15 7 10.1494 3.6979 0.1853 16 6 11.0147 3.2079 -0.7246 17 8 10.5990 2.6387 -1.7116 18 6 12.4983 3.3726 -0.5185 19 16 13.3871 2.6215 -1.9048 20 6 15.0482 2.9509 -1.4180 21 1 15.2464 3.4765 -0.4955 22 6 16.1019 2.5350 -2.2199 23 7 17.3427 2.7816 -1.8565 24 14 15.7590 1.6267 -3.8158 25 1 15.6278 2.6059 -4.9245 26 1 16.8798 0.6969 -4.1067 27 1 14.4970 0.8550 -3.6849 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.6884 1.8464 0.8899 32 1 1.6885 1.8464 -0.8900 33 1 6.4240 0.2759 -0.7717 34 1 6.4516 0.6233 0.9738 35 1 6.9226 2.1194 -2.3535 36 1 5.3215 2.6681 -1.8023 37 1 6.7090 3.7822 -1.7555 38 1 8.6508 1.7673 -0.8792 39 1 8.3784 1.7403 0.8796 40 1 7.2750 5.0293 1.0690 41 1 7.8255 3.6411 2.0609 42 1 9.3813 6.1786 1.2995 43 1 9.2538 5.3889 2.9067 44 1 10.6407 3.5371 2.2377 45 1 11.4273 4.8942 1.3750 46 1 12.7419 4.4335 -0.4628 47 1 12.7927 2.8831 0.4098 48 1 18.0792 2.4906 -2.4167 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674435366.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:50 Heat of formation + Delta-G solvation = -17.026205 kcal Electronic energy + Delta-G solvation = -26349.724123 eV Core-core repulsion = 22532.943329 eV Total energy + Delta-G solvation = -3816.780794 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.18753 -38.42476 -37.98877 -36.94085 -33.75670 -32.44929 -31.87530 -30.79274 -29.25817 -28.59687 -27.49653 -26.40970 -25.62795 -25.42782 -23.31347 -22.07618 -20.89757 -19.06847 -17.77027 -17.55860 -17.06620 -16.90389 -16.43400 -16.37372 -15.66649 -15.55865 -15.33478 -15.01382 -14.85690 -14.40810 -13.93442 -13.91024 -13.66138 -13.40514 -13.21134 -12.99276 -12.93821 -12.80286 -12.67789 -12.35943 -12.11251 -12.05756 -11.88149 -11.65378 -11.36458 -11.24365 -11.01908 -10.95400 -10.82694 -10.61203 -10.60514 -10.52718 -9.86620 -9.84004 -9.51153 -9.01187 -8.74238 -8.51170 -8.45314 -6.92811 -6.29593 -4.01412 2.04641 2.40581 2.67052 2.91624 3.13023 3.32147 3.36854 3.49618 3.59769 4.02632 4.09211 4.31864 4.38922 4.44606 4.68088 4.69672 4.75687 4.79711 4.87477 4.91415 4.95611 5.01696 5.09570 5.15355 5.17175 5.18405 5.21829 5.25251 5.32895 5.39902 5.49514 5.51446 5.60055 5.66003 5.73707 5.78616 5.80714 5.81780 5.92317 6.01459 6.12120 6.37075 6.58254 6.69476 6.77817 7.30115 7.59776 7.93437 8.40895 8.43008 9.16638 10.79633 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017721 B = 0.001947 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.629281 B =14375.624142 C =15624.699905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.181 3.819 4 C -0.192 4.192 5 C -0.130 4.130 6 C 0.163 3.837 7 N -0.535 5.535 8 C 0.021 3.979 9 C 0.041 3.959 10 C 0.146 3.854 11 H 0.074 0.926 12 C -0.112 4.112 13 C -0.136 4.136 14 C 0.099 3.901 15 N -0.621 5.621 16 C 0.548 3.452 17 O -0.517 6.517 18 C -0.118 4.118 19 S -0.143 6.143 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.880 5.880 24 Si 0.856 3.144 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.236 1.236 28 H 0.044 0.956 29 H 0.089 0.911 30 H 0.045 0.955 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.100 0.900 35 H 0.034 0.966 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.082 0.918 44 H 0.069 0.931 45 H 0.080 0.920 46 H 0.096 0.904 47 H 0.096 0.904 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.163 1.649 8.831 31.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C 0.106 3.894 4 C -0.194 4.194 5 C -0.131 4.131 6 C 0.036 3.964 7 N -0.259 5.259 8 C -0.127 4.127 9 C -0.087 4.087 10 C 0.042 3.958 11 H 0.092 0.908 12 C -0.150 4.150 13 C -0.174 4.174 14 C -0.024 4.024 15 N -0.359 5.359 16 C 0.336 3.664 17 O -0.392 6.392 18 C -0.268 4.268 19 S 0.084 5.916 20 C -0.668 4.668 21 H 0.106 0.894 22 C -0.112 4.112 23 N -0.517 5.517 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.160 1.160 28 H 0.063 0.937 29 H 0.108 0.892 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.118 0.882 35 H 0.053 0.947 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.101 0.899 44 H 0.088 0.912 45 H 0.098 0.902 46 H 0.114 0.886 47 H 0.114 0.886 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -30.581 0.927 7.584 31.521 hybrid contribution 0.837 0.006 -0.047 0.838 sum -29.745 0.934 7.537 30.699 Atomic orbital electron populations 1.22794 0.80203 1.03247 1.00291 1.87973 1.20156 1.27091 1.95522 1.19033 0.83749 0.85256 1.01379 1.21581 0.92756 1.02492 1.02550 1.22108 0.93125 0.97514 1.00306 1.19059 0.83849 0.90905 1.02552 1.61913 1.11630 1.25398 1.26961 1.22472 1.01144 1.01182 0.87903 1.22574 0.86054 0.97567 1.02538 1.21407 0.79716 0.95465 0.99199 0.90793 1.22544 0.97352 0.98966 0.96105 1.22859 0.94423 0.98423 1.01719 1.22382 0.98716 0.96133 0.85176 1.48554 1.05785 1.61903 1.19627 1.20000 0.87570 0.77270 0.81555 1.90682 1.79082 1.40845 1.28600 1.23262 0.92970 1.05434 1.05181 1.84771 1.03210 1.75297 1.28363 1.22306 0.88610 1.43850 1.12081 0.89396 1.24699 0.94045 0.94640 0.97840 1.69933 0.98231 1.45121 1.38373 0.86743 0.80263 0.81132 0.83757 1.19219 1.19928 1.15961 0.93689 0.89240 0.93687 0.90863 0.90902 0.91841 0.88198 0.94704 0.91565 0.90984 0.91887 0.90565 0.90138 0.90390 0.90603 0.89917 0.91246 0.90173 0.88569 0.88604 0.91940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.39 -3.51 10.66 -35.23 -0.38 -3.89 16 3 C 0.18 1.39 6.41 34.37 0.22 1.61 16 4 C -0.19 -2.03 13.73 -37.12 -0.51 -2.54 16 5 C -0.13 -1.41 12.32 -37.12 -0.46 -1.87 16 6 C 0.16 1.61 5.45 -6.61 -0.04 1.57 16 7 N -0.53 -5.62 4.47 -246.44 -1.10 -6.73 16 8 C 0.02 0.22 9.23 60.07 0.55 0.78 16 9 C 0.04 0.48 4.36 -3.83 -0.02 0.47 16 10 C 0.15 1.70 2.94 -66.95 -0.20 1.51 16 11 H 0.07 0.95 6.72 -51.93 -0.35 0.60 16 12 C -0.11 -0.96 6.27 -24.90 -0.16 -1.12 16 13 C -0.14 -1.07 7.10 -24.46 -0.17 -1.25 16 14 C 0.10 1.01 6.75 -2.41 -0.02 1.00 16 15 N -0.62 -8.46 3.06 -162.88 -0.50 -8.96 16 16 C 0.55 9.90 7.68 -10.99 -0.08 9.82 16 17 O -0.52 -11.04 14.65 5.55 0.08 -10.96 16 18 C -0.12 -2.31 5.08 36.00 0.18 -2.13 16 19 S -0.14 -3.63 18.55 -107.50 -1.99 -5.62 16 20 C -0.52 -15.00 10.04 30.94 0.31 -14.69 16 21 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 22 C 0.10 2.82 5.50 -17.44 -0.10 2.72 16 23 N -0.88 -26.52 13.97 55.49 0.78 -25.75 16 24 Si 0.86 21.82 27.74 -169.99 -4.72 17.11 16 25 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 26 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 28 H 0.04 0.17 8.14 -51.93 -0.42 -0.26 16 29 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.63 8.12 -51.93 -0.42 0.21 16 34 H 0.10 0.86 7.86 -51.93 -0.41 0.45 16 35 H 0.03 0.40 8.01 -51.93 -0.42 -0.01 16 36 H 0.07 0.66 7.04 -51.93 -0.37 0.29 16 37 H 0.07 0.74 6.82 -51.93 -0.35 0.39 16 38 H 0.06 0.94 6.38 -51.93 -0.33 0.61 16 39 H 0.08 0.84 7.72 -51.93 -0.40 0.44 16 40 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.08 0.65 7.79 -51.93 -0.40 0.24 16 42 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.08 0.82 7.47 -51.93 -0.39 0.43 16 46 H 0.10 1.78 7.96 -51.92 -0.41 1.36 16 47 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 48 H 0.27 7.58 8.31 -40.82 -0.34 7.25 16 LS Contribution 407.58 15.07 6.14 6.14 Total: -1.00 -34.76 407.58 -9.11 -43.86 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -8.06 Total: -2.35 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: 0.64 Total: -2.85 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: -0.83 Total: -41.44 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -0.29 Total: -14.85 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.72 Total: 17.11 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.76 -9.11 -43.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674435366.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.836 kcal (2) G-P(sol) polarization free energy of solvation -34.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds