Wall clock time and date at job start Sat Apr 11 2020 06:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99504 * 2 1 4 4 C 1.47205 * 109.47108 * 179.97438 * 3 2 1 5 5 C 3.40061 * 161.18465 * 0.02562 * 2 1 3 6 6 C 4.78784 * 168.18213 * 0.02562 * 2 1 3 7 7 N 1.46900 * 109.46567 * 168.70550 * 6 5 4 8 8 C 1.46902 * 111.00033 * 293.94849 * 7 6 5 9 9 C 1.46903 * 110.99726 * 169.99912 * 7 6 5 10 10 C 1.52995 * 109.47263 * 196.04834 * 9 7 6 11 11 H 1.09004 * 109.87303 * 305.03263 * 10 9 7 12 12 C 1.54326 * 110.01264 * 66.13340 * 10 9 7 13 13 C 1.55154 * 102.94430 * 141.68242 * 12 10 9 14 14 C 1.55133 * 101.48423 * 324.33377 * 13 12 10 15 15 N 1.47022 * 109.88373 * 184.01829 * 10 9 7 16 16 C 1.34780 * 125.64789 * 61.45332 * 15 10 9 17 17 O 1.21286 * 119.99811 * 354.86680 * 16 15 10 18 18 C 1.50697 * 120.00110 * 174.59555 * 16 15 10 19 19 S 1.80994 * 109.47233 * 180.27215 * 18 16 15 20 20 C 1.76206 * 100.00303 * 179.97438 * 19 18 16 21 21 H 1.08002 * 119.99730 * 0.02562 * 20 19 18 22 22 C 1.38793 * 120.00287 * 180.02562 * 20 19 18 23 23 N 1.31624 * 120.00119 * 179.97438 * 22 20 19 24 24 Si 1.86807 * 119.99852 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47147 * 90.00196 * 24 22 20 26 26 H 1.48502 * 109.46772 * 209.99921 * 24 22 20 27 27 H 1.48501 * 109.47212 * 329.99553 * 24 22 20 28 28 H 1.09000 * 109.46963 * 60.00421 * 1 2 3 29 29 H 1.09004 * 109.46697 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47522 * 299.99812 * 1 2 3 31 31 H 1.08999 * 109.47406 * 59.99628 * 3 2 1 32 32 H 1.08999 * 109.47158 * 299.99570 * 3 2 1 33 33 H 1.08996 * 109.47271 * 48.71017 * 6 5 4 34 34 H 1.08999 * 109.47115 * 288.70509 * 6 5 4 35 35 H 1.08994 * 109.47608 * 291.02738 * 8 7 6 36 36 H 1.09004 * 109.46746 * 51.03361 * 8 7 6 37 37 H 1.09001 * 109.46692 * 171.02977 * 8 7 6 38 38 H 1.09005 * 109.47079 * 76.04600 * 9 7 6 39 39 H 1.09004 * 109.47401 * 316.05184 * 9 7 6 40 40 H 1.09000 * 110.71921 * 260.04611 * 12 10 9 41 41 H 1.09003 * 110.71594 * 23.14032 * 12 10 9 42 42 H 1.08998 * 111.00442 * 82.57395 * 13 12 10 43 43 H 1.08999 * 111.00403 * 206.38626 * 13 12 10 44 44 H 1.08993 * 110.49496 * 278.44928 * 14 13 12 45 45 H 1.09003 * 110.33886 * 156.05784 * 14 13 12 46 46 H 1.08997 * 109.47237 * 300.27267 * 18 16 15 47 47 H 1.08997 * 109.47055 * 60.26963 * 18 16 15 48 48 H 0.97001 * 120.00372 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.4776 1.1894 0.0006 5 6 4.6479 1.0968 0.0005 6 6 6.1154 0.9806 0.0004 7 7 6.7106 2.2959 -0.2708 8 6 6.3956 2.7453 -1.6335 9 6 8.1622 2.2732 -0.0464 10 6 8.6848 3.7074 0.0566 11 1 8.3942 4.2722 -0.8292 12 6 8.1183 4.3864 1.3214 13 6 9.3176 5.2288 1.8305 14 6 10.5145 4.3073 1.4770 15 7 10.1494 3.6979 0.1853 16 6 11.0147 3.2079 -0.7246 17 8 10.5990 2.6387 -1.7116 18 6 12.4983 3.3726 -0.5185 19 16 13.3871 2.6215 -1.9048 20 6 15.0482 2.9509 -1.4180 21 1 15.2464 3.4765 -0.4955 22 6 16.1019 2.5350 -2.2199 23 7 17.3427 2.7816 -1.8565 24 14 15.7590 1.6267 -3.8158 25 1 15.6278 2.6059 -4.9245 26 1 16.8798 0.6969 -4.1067 27 1 14.4970 0.8550 -3.6849 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.6884 1.8464 0.8899 32 1 1.6885 1.8464 -0.8900 33 1 6.4240 0.2759 -0.7717 34 1 6.4516 0.6233 0.9738 35 1 6.9226 2.1194 -2.3535 36 1 5.3215 2.6681 -1.8023 37 1 6.7090 3.7822 -1.7555 38 1 8.6508 1.7673 -0.8792 39 1 8.3784 1.7403 0.8796 40 1 7.2750 5.0293 1.0690 41 1 7.8255 3.6411 2.0609 42 1 9.3813 6.1786 1.2995 43 1 9.2538 5.3889 2.9067 44 1 10.6407 3.5371 2.2377 45 1 11.4273 4.8942 1.3750 46 1 12.7419 4.4335 -0.4628 47 1 12.7927 2.8831 0.4098 48 1 18.0792 2.4906 -2.4167 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674435366.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:49 Heat of formation + Delta-G solvation = -40.345624 kcal Electronic energy + Delta-G solvation = -26350.735329 eV Core-core repulsion = 22532.943329 eV Total energy + Delta-G solvation = -3817.792000 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.32046 -39.13625 -38.91018 -37.96345 -34.68932 -34.53466 -33.02297 -31.63723 -30.32006 -29.62768 -28.19345 -27.86455 -27.08910 -26.09156 -24.31596 -22.93025 -21.81483 -20.40698 -19.51955 -18.41165 -18.20753 -17.56833 -17.38111 -17.12686 -16.91607 -16.56539 -16.54820 -16.28505 -16.10779 -15.79887 -15.34629 -14.91074 -14.83414 -14.45263 -14.10239 -14.05579 -13.98839 -13.65821 -13.61223 -13.38578 -13.28928 -13.26942 -13.03355 -12.78218 -12.70210 -12.54791 -12.47287 -12.04245 -11.87792 -11.78651 -11.55553 -11.31706 -11.22568 -11.18735 -10.95429 -10.55341 -10.45650 -9.79841 -9.45616 -9.01988 -8.52920 -6.24060 0.94544 1.28397 1.29556 1.44191 1.50466 1.52151 1.63302 2.02345 2.23339 2.63228 2.70216 2.85359 3.19000 3.47424 3.49099 3.66302 3.83414 3.92814 4.13785 4.16386 4.23692 4.23789 4.25479 4.30770 4.39597 4.42402 4.44394 4.50764 4.54325 4.59228 4.61907 4.68129 4.71109 4.78542 4.87767 4.88165 4.91140 5.04216 5.07301 5.19112 5.36886 5.44298 5.69424 5.81465 5.85628 6.09876 6.13092 6.38539 6.52569 6.92268 7.06375 8.59473 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017721 B = 0.001947 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.629281 B =14375.624142 C =15624.699905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.420 6.420 3 C 0.176 3.824 4 C -0.197 4.197 5 C -0.155 4.155 6 C 0.163 3.837 7 N -0.526 5.526 8 C 0.025 3.975 9 C 0.050 3.950 10 C 0.142 3.858 11 H 0.061 0.939 12 C -0.101 4.101 13 C -0.124 4.124 14 C 0.087 3.913 15 N -0.612 5.612 16 C 0.547 3.453 17 O -0.559 6.559 18 C -0.102 4.102 19 S -0.175 6.175 20 C -0.529 4.529 21 H 0.062 0.938 22 C 0.048 3.952 23 N -0.915 5.915 24 Si 0.913 3.087 25 H -0.263 1.263 26 H -0.258 1.258 27 H -0.238 1.238 28 H 0.057 0.943 29 H 0.095 0.905 30 H 0.059 0.941 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.058 0.942 34 H 0.114 0.886 35 H 0.017 0.983 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.026 0.974 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.111 0.889 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.109 0.891 47 H 0.109 0.891 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.546 2.304 10.149 34.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.340 6.340 3 C 0.101 3.899 4 C -0.198 4.198 5 C -0.156 4.156 6 C 0.037 3.963 7 N -0.250 5.250 8 C -0.123 4.123 9 C -0.079 4.079 10 C 0.038 3.962 11 H 0.079 0.921 12 C -0.138 4.138 13 C -0.162 4.162 14 C -0.035 4.035 15 N -0.347 5.347 16 C 0.335 3.665 17 O -0.437 6.437 18 C -0.253 4.253 19 S 0.052 5.948 20 C -0.676 4.676 21 H 0.081 0.919 22 C -0.157 4.157 23 N -0.553 5.553 24 Si 0.735 3.265 25 H -0.187 1.187 26 H -0.182 1.182 27 H -0.162 1.162 28 H 0.076 0.924 29 H 0.113 0.887 30 H 0.078 0.922 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.076 0.924 34 H 0.132 0.868 35 H 0.036 0.964 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.045 0.955 39 H 0.105 0.895 40 H 0.110 0.890 41 H 0.106 0.894 42 H 0.096 0.904 43 H 0.129 0.871 44 H 0.103 0.897 45 H 0.099 0.901 46 H 0.127 0.873 47 H 0.128 0.872 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -32.989 1.608 8.951 34.220 hybrid contribution 1.441 -0.132 -0.326 1.484 sum -31.548 1.476 8.624 32.739 Atomic orbital electron populations 1.22996 0.78268 1.04157 1.01634 1.87916 1.22360 1.27924 1.95813 1.19298 0.82128 0.85252 1.03220 1.22393 0.93887 1.01730 1.01832 1.22350 0.93611 0.98363 1.01282 1.19098 0.83692 0.90394 1.03147 1.61945 1.10606 1.25806 1.26627 1.22436 1.01303 1.00927 0.87650 1.22429 0.86510 0.97428 1.01510 1.21597 0.78394 0.95556 1.00651 0.92071 1.22517 0.97780 0.99159 0.94387 1.22856 0.92319 0.97543 1.03470 1.22748 1.00077 0.97069 0.83610 1.48525 1.06347 1.60086 1.19737 1.19654 0.87244 0.77625 0.81961 1.90671 1.79451 1.43059 1.30543 1.23212 0.93686 1.05603 1.02820 1.84698 1.01798 1.76446 1.31896 1.22439 0.90714 1.43286 1.11196 0.91944 1.25521 0.93904 0.95420 1.00889 1.70007 0.99138 1.46303 1.39872 0.85893 0.80369 0.80282 0.79979 1.18730 1.18209 1.16231 0.92429 0.88658 0.92221 0.88779 0.89086 0.92365 0.86779 0.96432 0.90850 0.90737 0.95529 0.89514 0.88981 0.89387 0.90436 0.87075 0.89676 0.90055 0.87328 0.87232 0.91337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 11.01 113.37 1.25 1.45 16 2 O -0.42 -7.06 10.66 -148.98 -1.59 -8.65 16 3 C 0.18 2.40 6.41 70.18 0.45 2.85 16 4 C -0.20 -3.95 13.73 31.13 0.43 -3.52 16 5 C -0.16 -3.27 12.32 31.13 0.38 -2.88 16 6 C 0.16 3.14 5.45 84.50 0.46 3.60 16 7 N -0.53 -10.68 4.47 -933.61 -4.18 -14.85 16 8 C 0.03 0.53 9.23 127.69 1.18 1.71 16 9 C 0.05 1.15 4.36 86.30 0.38 1.53 16 10 C 0.14 3.11 2.94 45.34 0.13 3.24 16 11 H 0.06 1.53 6.72 -2.38 -0.02 1.51 16 12 C -0.10 -1.41 6.27 31.78 0.20 -1.21 16 13 C -0.12 -1.49 7.10 32.06 0.23 -1.26 16 14 C 0.09 1.54 6.75 86.93 0.59 2.12 16 15 N -0.61 -15.87 3.06 -787.62 -2.41 -18.28 16 16 C 0.55 19.68 7.68 87.66 0.67 20.35 16 17 O -0.56 -24.33 14.65 -3.05 -0.04 -24.37 16 18 C -0.10 -3.98 5.08 71.23 0.36 -3.62 16 19 S -0.17 -8.96 18.55 -56.49 -1.05 -10.01 16 20 C -0.53 -30.98 10.04 67.95 0.68 -30.29 16 21 H 0.06 3.85 8.03 -2.91 -0.02 3.83 16 22 C 0.05 2.84 5.50 84.86 0.47 3.31 16 23 N -0.92 -55.79 13.97 21.65 0.30 -55.49 16 24 Si 0.91 45.30 27.74 68.60 1.90 47.20 16 25 H -0.26 -12.73 7.11 99.48 0.71 -12.03 16 26 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 27 H -0.24 -11.86 6.74 99.48 0.67 -11.19 16 28 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.06 1.18 8.12 -2.39 -0.02 1.16 16 34 H 0.11 1.83 7.86 -2.39 -0.02 1.81 16 35 H 0.02 0.42 8.01 -2.39 -0.02 0.40 16 36 H 0.07 1.43 7.04 -2.38 -0.02 1.41 16 37 H 0.07 1.51 6.82 -2.39 -0.02 1.50 16 38 H 0.03 0.82 6.38 -2.38 -0.02 0.81 16 39 H 0.09 1.79 7.72 -2.39 -0.02 1.77 16 40 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.09 1.12 7.79 -2.39 -0.02 1.10 16 42 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.08 1.46 7.47 -2.39 -0.02 1.44 16 46 H 0.11 3.94 7.96 -2.40 -0.02 3.92 16 47 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 48 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -76.82 407.58 1.69 -75.13 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: 0.90 Total: 11.96 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: 7.86 Total: -2.63 kcal Atomic # 7 Polarization: -82.34 SS G_CDS: -6.29 Total: -88.63 kcal Atomic # 8 Polarization: -31.39 SS G_CDS: -1.63 Total: -33.02 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.90 Total: 47.20 kcal Atomic # 16 Polarization: -8.96 SS G_CDS: -1.05 Total: -10.01 kcal Total: -76.82 1.69 -75.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674435366.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.786 kcal (2) G-P(sol) polarization free energy of solvation -76.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds