Wall clock time and date at job start Sat Apr 11 2020 06:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 5 5 O 1.21288 * 120.00038 * 239.99878 * 4 2 1 6 6 N 1.34777 * 120.00369 * 59.99719 * 4 2 1 7 7 C 1.46505 * 120.00115 * 180.02562 * 6 4 2 8 8 H 1.08997 * 112.84723 * 336.19915 * 7 6 4 9 9 C 1.53777 * 113.61236 * 107.50258 * 7 6 4 10 10 C 1.53781 * 87.08064 * 89.11669 * 9 7 6 11 11 H 1.09000 * 113.60890 * 270.87794 * 10 9 7 12 12 C 1.53000 * 113.68949 * 139.99273 * 10 9 7 13 13 N 1.46504 * 109.47494 * 87.46247 * 12 10 9 14 14 C 1.34772 * 120.00109 * 179.97438 * 13 12 10 15 15 O 1.21284 * 119.99930 * 359.97438 * 14 13 12 16 16 C 1.50700 * 120.00327 * 180.02562 * 14 13 12 17 17 S 1.80992 * 109.47271 * 179.97438 * 16 14 13 18 18 C 1.76205 * 99.99973 * 179.97438 * 17 16 14 19 19 H 1.08003 * 119.99634 * 0.02562 * 18 17 16 20 20 C 1.38798 * 120.00262 * 180.02562 * 18 17 16 21 21 N 1.31629 * 119.99860 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99986 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47150 * 90.00136 * 22 20 18 24 24 H 1.48502 * 109.47170 * 210.00069 * 22 20 18 25 25 H 1.48491 * 109.47377 * 330.00010 * 22 20 18 26 26 C 1.53777 * 113.61137 * 204.99970 * 7 6 4 27 27 C 1.52997 * 109.47127 * 120.00132 * 2 1 3 28 28 C 1.52998 * 117.50113 * 248.74799 * 27 2 1 29 29 C 1.52999 * 117.49892 * 180.08921 * 27 2 1 30 30 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 32 32 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 33 33 H 0.96995 * 119.99691 * 359.97438 * 6 4 2 34 34 H 1.09001 * 113.61017 * 203.66177 * 9 7 6 35 35 H 1.09002 * 113.61931 * 334.56364 * 9 7 6 36 36 H 1.09005 * 109.47105 * 207.46197 * 12 10 9 37 37 H 1.09006 * 109.47144 * 327.45902 * 12 10 9 38 38 H 0.96996 * 119.99568 * 359.97438 * 13 12 10 39 39 H 1.09005 * 109.46705 * 300.00094 * 16 14 13 40 40 H 1.09001 * 109.46739 * 59.99616 * 16 14 13 41 41 H 0.97007 * 120.00081 * 180.02562 * 21 20 18 42 42 H 1.09002 * 113.62036 * 25.43234 * 26 7 6 43 43 H 1.09004 * 113.61507 * 156.33357 * 26 7 6 44 44 H 1.09000 * 115.55088 * 34.42152 * 27 2 1 45 45 H 1.09003 * 117.49363 * 0.02562 * 28 27 2 46 46 H 1.08997 * 117.50131 * 145.02057 * 28 27 2 47 47 H 1.09003 * 117.49621 * 214.98130 * 29 27 2 48 48 H 1.09005 * 117.49771 * 359.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.7297 -1.6964 -1.1193 6 7 1.7068 -0.2498 -2.4546 7 6 2.1948 -0.9406 -3.6508 8 1 3.0999 -1.5191 -3.4659 9 6 1.1028 -1.7240 -4.3982 10 6 0.8295 -0.4341 -5.1897 11 1 0.0931 0.2183 -4.7203 12 6 0.5515 -0.6717 -6.6753 13 7 -0.8779 -0.9268 -6.8701 14 6 -1.3577 -1.1641 -8.1070 15 8 -0.6062 -1.1658 -9.0589 16 6 -2.8282 -1.4260 -8.3075 17 16 -3.1570 -1.7057 -10.0652 18 6 -4.8970 -1.9788 -10.0112 19 1 -5.4205 -1.9409 -9.0673 20 6 -5.5947 -2.2427 -11.1817 21 7 -4.9565 -2.2894 -12.3320 22 14 -7.4391 -2.5329 -11.1243 23 1 -8.1491 -1.2387 -11.2863 24 1 -7.8298 -3.4528 -12.2227 25 1 -7.8046 -3.1379 -9.8184 26 6 2.2845 -0.0359 -4.8911 27 6 2.0401 -0.7213 1.2492 28 6 2.7393 0.1230 2.3165 29 6 3.5550 -0.8263 1.4353 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.1489 0.5386 -2.5435 34 1 1.4909 -2.5379 -5.0105 35 1 0.2722 -2.0303 -3.7622 36 1 0.8441 0.2102 -7.2453 37 1 1.1245 -1.5329 -7.0190 38 1 -1.4790 -0.9251 -6.1088 39 1 -3.1210 -2.3079 -7.7378 40 1 -3.4008 -0.5646 -7.9636 41 1 -5.4442 -2.4734 -13.1501 42 1 2.4080 1.0206 -4.6530 43 1 2.9957 -0.3884 -5.6381 44 1 1.4320 -1.5595 1.5893 45 1 2.8356 1.1924 2.1288 46 1 2.5916 -0.1600 3.3587 47 1 3.9436 -1.7335 1.8981 48 1 4.1884 -0.3819 0.6675 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001679048029.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:34 Heat of formation + Delta-G solvation = -67.674987 kcal Electronic energy + Delta-G solvation = -26002.049617 eV Core-core repulsion = 22183.072527 eV Total energy + Delta-G solvation = -3818.977090 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.51426 -40.62668 -39.66462 -37.81866 -35.74562 -34.58387 -34.45912 -32.78813 -31.24615 -28.32570 -27.58287 -26.66243 -25.72820 -23.84061 -23.18631 -22.64034 -21.79767 -20.78576 -20.28394 -19.72198 -18.18394 -17.74200 -17.33518 -17.02772 -16.87453 -16.69738 -16.42141 -15.96460 -15.77560 -15.55997 -15.45757 -14.95063 -14.81319 -14.53919 -14.47301 -13.89905 -13.63594 -13.43914 -13.37066 -13.20858 -13.16127 -12.91033 -12.85511 -12.66308 -12.61567 -12.36429 -12.04238 -11.91872 -11.74887 -11.61738 -11.34913 -11.25313 -11.13879 -10.96886 -10.88162 -10.56502 -10.26880 -10.09042 -9.97920 -8.66320 -8.34314 -6.12472 1.27977 1.42848 1.48017 1.58316 1.63618 1.66977 2.12071 2.26947 2.33081 2.99918 3.00316 3.32357 3.50150 3.58991 3.60474 3.77542 3.83712 3.91874 3.94478 4.04481 4.18713 4.28182 4.30619 4.33520 4.38314 4.51945 4.57924 4.59636 4.69346 4.81685 4.82106 4.85868 4.87208 4.91991 5.02674 5.05923 5.08158 5.12781 5.22449 5.23893 5.26858 5.38070 5.42123 5.49180 5.67580 6.20102 6.53939 6.60222 7.07024 7.27687 7.31950 8.74907 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021933 B = 0.001601 C = 0.001518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.296227 B =17485.728262 C =18436.177922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.074 4.074 3 H 0.118 0.882 4 C 0.514 3.486 5 O -0.575 6.575 6 N -0.701 5.701 7 C 0.118 3.882 8 H 0.082 0.918 9 C -0.146 4.146 10 C -0.107 4.107 11 H 0.119 0.881 12 C 0.129 3.871 13 N -0.710 5.710 14 C 0.531 3.469 15 O -0.569 6.569 16 C -0.130 4.130 17 S -0.154 6.154 18 C -0.547 4.547 19 H 0.083 0.917 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 0.999 3.001 23 H -0.267 1.267 24 H -0.278 1.278 25 H -0.258 1.258 26 C -0.124 4.124 27 C -0.146 4.146 28 C -0.162 4.162 29 C -0.176 4.176 30 H 0.049 0.951 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.415 0.585 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.416 0.584 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.271 0.729 42 H 0.094 0.906 43 H 0.099 0.901 44 H 0.098 0.902 45 H 0.108 0.892 46 H 0.103 0.897 47 H 0.084 0.916 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.885 9.506 31.284 35.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.095 4.095 3 H 0.136 0.864 4 C 0.301 3.699 5 O -0.454 6.454 6 N -0.353 5.353 7 C 0.012 3.988 8 H 0.100 0.900 9 C -0.185 4.185 10 C -0.125 4.125 11 H 0.137 0.863 12 C 0.006 3.994 13 N -0.364 5.364 14 C 0.317 3.683 15 O -0.447 6.447 16 C -0.281 4.281 17 S 0.073 5.927 18 C -0.695 4.695 19 H 0.101 0.899 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.820 3.180 23 H -0.192 1.192 24 H -0.204 1.204 25 H -0.182 1.182 26 C -0.162 4.162 27 C -0.165 4.165 28 C -0.199 4.199 29 C -0.213 4.213 30 H 0.068 0.932 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.252 0.748 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.253 0.747 39 H 0.126 0.874 40 H 0.129 0.871 41 H 0.080 0.920 42 H 0.113 0.887 43 H 0.117 0.883 44 H 0.116 0.884 45 H 0.126 0.874 46 H 0.122 0.878 47 H 0.103 0.897 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 14.649 8.783 29.629 34.200 hybrid contribution -2.081 -0.308 0.705 2.218 sum 12.568 8.475 30.334 33.911 Atomic orbital electron populations 1.21762 0.90946 1.02611 1.04298 1.20932 0.98596 1.00250 0.89722 0.86441 1.21197 0.79074 0.84124 0.85477 1.90704 1.39366 1.28019 1.87268 1.45615 1.53403 1.31982 1.04288 1.21725 0.97379 0.95071 0.84578 0.89956 1.23502 0.99322 0.97050 0.98623 1.22808 0.98835 0.98503 0.92397 0.86316 1.21430 0.80329 1.00754 0.96904 1.45739 1.10373 1.72407 1.07844 1.20076 0.89244 0.75617 0.83384 1.90693 1.60035 1.51855 1.42147 1.23375 0.95937 1.06287 1.02479 1.85588 1.10228 1.92997 1.03861 1.23216 0.92917 1.56187 0.97167 0.89865 1.26126 1.05011 0.94038 0.93944 1.70187 1.38538 1.46975 0.99083 0.84951 0.75992 0.78503 0.78518 1.19224 1.20370 1.18214 1.23255 0.95780 1.01105 0.96105 1.22032 0.95480 1.02075 0.96907 1.23175 1.02560 0.97847 0.96309 1.22747 0.93952 1.01778 1.02842 0.93219 0.89855 0.90316 0.74756 0.89770 0.91052 0.92024 0.92678 0.74723 0.87386 0.87080 0.92007 0.88732 0.88279 0.88358 0.87381 0.87849 0.89709 0.90125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.79 9.07 71.98 0.65 -0.13 16 2 C -0.07 -0.67 2.88 -11.54 -0.03 -0.70 16 3 H 0.12 0.59 7.90 -2.39 -0.02 0.57 16 4 C 0.51 7.71 7.03 87.66 0.62 8.33 16 5 O -0.57 -14.07 14.69 -3.05 -0.04 -14.12 16 6 N -0.70 -6.97 5.16 -440.04 -2.27 -9.24 16 7 C 0.12 1.50 4.32 45.51 0.20 1.69 16 8 H 0.08 1.45 7.46 -2.39 -0.02 1.43 16 9 C -0.15 -1.95 7.43 31.12 0.23 -1.72 16 10 C -0.11 -1.17 3.63 -10.27 -0.04 -1.20 16 11 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 12 C 0.13 2.53 5.51 86.38 0.48 3.00 16 13 N -0.71 -16.44 5.56 -463.04 -2.57 -19.01 16 14 C 0.53 19.10 7.85 87.66 0.69 19.78 16 15 O -0.57 -26.17 15.86 -3.04 -0.05 -26.21 16 16 C -0.13 -5.03 6.16 71.24 0.44 -4.59 16 17 S -0.15 -8.53 20.57 -56.49 -1.16 -9.69 16 18 C -0.55 -31.12 9.50 67.95 0.65 -30.47 16 19 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 20 C 0.01 0.77 5.49 84.86 0.47 1.23 16 21 N -0.91 -55.95 13.22 21.65 0.29 -55.67 16 22 Si 1.00 43.33 29.55 68.60 2.03 45.36 16 23 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 24 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 25 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 26 C -0.12 -1.17 7.39 31.12 0.23 -0.94 16 27 C -0.15 -1.79 4.72 -10.80 -0.05 -1.84 16 28 C -0.16 -1.45 10.18 30.62 0.31 -1.14 16 29 C -0.18 -2.55 8.98 30.62 0.27 -2.27 16 30 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.08 0.18 7.56 -2.39 -0.02 0.17 16 33 H 0.42 1.59 8.12 -92.71 -0.75 0.84 16 34 H 0.08 1.32 7.90 -2.39 -0.02 1.30 16 35 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 37 H 0.05 1.26 7.85 -2.38 -0.02 1.24 16 38 H 0.42 6.66 8.47 -92.71 -0.79 5.87 16 39 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 40 H 0.11 3.82 8.14 -2.40 -0.02 3.80 16 41 H 0.27 15.43 8.31 -92.70 -0.77 14.66 16 42 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.10 1.01 8.10 -2.38 -0.02 0.99 16 44 H 0.10 1.34 8.11 -2.39 -0.02 1.32 16 45 H 0.11 0.65 8.05 -2.39 -0.02 0.63 16 46 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 48 H 0.08 1.32 8.10 -2.38 -0.02 1.30 16 Total: -1.00 -82.94 411.24 0.75 -82.19 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -0.57 Total: 17.36 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: 5.11 Total: -10.97 kcal Atomic # 7 Polarization: -79.36 SS G_CDS: -4.55 Total: -83.91 kcal Atomic # 8 Polarization: -40.24 SS G_CDS: -0.09 Total: -40.33 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 16 Polarization: -8.53 SS G_CDS: -1.16 Total: -9.69 kcal Total: -82.94 0.75 -82.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001679048029.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.517 kcal (2) G-P(sol) polarization free energy of solvation -82.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds