Wall clock time and date at job start Sat Apr 11 2020 06:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.46988 * 2 1 4 4 C 1.50707 * 109.46759 * 119.99616 * 2 1 3 5 5 O 1.21278 * 119.99582 * 120.00284 * 4 2 1 6 6 N 1.34777 * 120.00059 * 299.99887 * 4 2 1 7 7 C 1.46498 * 120.00030 * 180.02562 * 6 4 2 8 8 H 1.09006 * 112.85056 * 23.79814 * 7 6 4 9 9 C 1.53781 * 113.61650 * 154.99967 * 7 6 4 10 10 C 1.53785 * 87.07896 * 89.11524 * 9 7 6 11 11 H 1.09002 * 113.61186 * 270.80050 * 10 9 7 12 12 C 1.52997 * 113.61646 * 139.98451 * 10 9 7 13 13 N 1.46499 * 109.47555 * 176.52802 * 12 10 9 14 14 C 1.34777 * 120.00199 * 180.02562 * 13 12 10 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 12 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 12 17 17 S 1.80999 * 109.46903 * 179.72354 * 16 14 13 18 18 C 1.76200 * 99.99730 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00351 * 0.02562 * 18 17 16 20 20 C 1.38796 * 120.00095 * 179.97438 * 18 17 16 21 21 N 1.31634 * 119.99941 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00384 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47035 * 59.99524 * 22 20 18 24 24 H 1.48499 * 109.47381 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46580 * 299.99884 * 22 20 18 26 26 C 1.53777 * 87.17707 * 25.38772 * 10 9 7 27 27 C 1.52992 * 109.47130 * 239.99607 * 2 1 3 28 28 C 1.53000 * 117.49845 * 128.74809 * 27 2 1 29 29 C 1.52998 * 117.50013 * 60.09276 * 27 2 1 30 30 H 1.09001 * 109.47097 * 60.00448 * 1 2 3 31 31 H 1.08996 * 109.46988 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47123 * 300.00482 * 1 2 3 33 33 H 0.97000 * 120.00041 * 0.02562 * 6 4 2 34 34 H 1.08994 * 113.61430 * 334.56973 * 9 7 6 35 35 H 1.08995 * 113.61157 * 203.65951 * 9 7 6 36 36 H 1.08998 * 109.47382 * 56.52364 * 12 10 9 37 37 H 1.09002 * 109.47216 * 296.52800 * 12 10 9 38 38 H 0.97000 * 119.99484 * 359.97438 * 13 12 10 39 39 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 40 40 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 41 41 H 0.97002 * 120.00288 * 179.97438 * 21 20 18 42 42 H 1.09002 * 113.61320 * 89.15693 * 26 10 9 43 43 H 1.08998 * 113.61710 * 220.06313 * 26 10 9 44 44 H 1.08998 * 115.54856 * 274.41618 * 27 2 1 45 45 H 1.08995 * 117.49933 * 0.02562 * 28 27 2 46 46 H 1.09006 * 117.49790 * 145.02014 * 28 27 2 47 47 H 1.09011 * 117.49697 * 214.97986 * 29 27 2 48 48 H 1.08998 * 117.49763 * 359.96671 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 2.7296 -1.6964 1.1193 6 7 1.7067 -0.2498 2.4547 7 6 2.1954 -0.9400 3.6509 8 1 3.1009 -1.5180 3.4659 9 6 2.2848 -0.0351 4.8910 10 6 0.8300 -0.4342 5.1900 11 1 0.0932 0.2186 4.7219 12 6 0.5531 -0.6736 6.6755 13 7 -0.8698 -0.9656 6.8662 14 6 -1.3477 -1.2108 8.1023 15 8 -0.5996 -1.1902 9.0567 16 6 -2.8102 -1.5173 8.2976 17 16 -3.1367 -1.8062 10.0544 18 6 -4.8675 -2.1306 9.9945 19 1 -5.3886 -2.1093 9.0488 20 6 -5.5611 -2.4148 11.1627 21 7 -4.9258 -2.4423 12.3152 22 14 -7.3959 -2.7594 11.0993 23 1 -7.6480 -3.9410 10.2359 24 1 -7.8962 -3.0319 12.4707 25 1 -8.1023 -1.5786 10.5408 26 6 1.1013 -1.7242 4.3982 27 6 2.0400 -0.7213 -1.2491 28 6 3.0764 0.0038 -2.1100 29 6 1.6376 -0.1484 -2.6095 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.1487 0.5387 2.5436 34 1 2.4074 1.0214 4.6526 35 1 2.9963 -0.3870 5.6379 36 1 0.8203 0.2177 7.2432 37 1 1.1472 -1.5182 7.0244 38 1 -1.4681 -0.9817 6.1028 39 1 -3.4076 -0.6740 7.9509 40 1 -3.0740 -2.4081 7.7277 41 1 -5.4105 -2.6405 13.1317 42 1 1.4888 -2.5388 5.0101 43 1 0.2701 -2.0294 3.7625 44 1 2.1253 -1.8046 -1.1645 45 1 3.3951 0.9946 -1.7862 46 1 3.8432 -0.6026 -2.5921 47 1 1.4583 -0.8550 -3.4201 48 1 1.0090 0.7420 -2.6146 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001679048030.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:37 Heat of formation + Delta-G solvation = -44.321359 kcal Electronic energy + Delta-G solvation = -25926.585906 eV Core-core repulsion = 22108.621505 eV Total energy + Delta-G solvation = -3817.964400 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.88160 -39.56416 -38.70342 -37.48095 -34.69259 -33.64199 -32.43084 -32.14702 -29.84355 -27.26505 -26.10297 -25.62804 -25.43729 -23.10017 -22.71915 -21.98323 -20.46572 -20.10650 -19.53349 -17.95320 -17.75652 -16.66846 -16.28093 -16.07144 -15.80483 -15.50657 -15.33999 -14.88957 -14.80745 -14.66166 -14.10189 -13.99524 -13.95054 -13.52386 -13.26708 -12.95502 -12.85955 -12.74689 -12.59258 -12.53885 -12.27922 -11.91496 -11.73508 -11.46681 -11.30264 -11.04936 -11.04311 -11.01600 -10.82247 -10.76455 -10.59178 -10.49874 -10.09099 -9.82565 -9.44594 -9.37814 -9.06619 -8.86859 -8.24245 -6.50283 -6.21736 -3.92493 2.23610 2.64861 3.03291 3.10604 3.23092 3.27265 3.30859 3.35885 3.69294 4.06316 4.08325 4.16021 4.20319 4.25141 4.40002 4.46141 4.48481 4.58197 4.71211 4.87184 4.91030 4.96099 5.13244 5.13470 5.15233 5.20863 5.27236 5.31870 5.35517 5.42287 5.42661 5.46739 5.56065 5.61840 5.63878 5.66087 5.74114 5.79102 5.84832 5.89489 5.93302 6.13405 6.22244 6.62845 7.07077 7.58844 7.71160 7.83038 8.34652 8.61949 9.23348 10.85617 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020135 B = 0.001605 C = 0.001511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.295300 B =17444.773225 C =18524.381774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.080 4.080 3 H 0.097 0.903 4 C 0.522 3.478 5 O -0.534 6.534 6 N -0.713 5.713 7 C 0.118 3.882 8 H 0.104 0.896 9 C -0.135 4.135 10 C -0.123 4.123 11 H 0.094 0.906 12 C 0.131 3.869 13 N -0.738 5.738 14 C 0.530 3.470 15 O -0.518 6.518 16 C -0.153 4.153 17 S -0.060 6.060 18 C -0.537 4.537 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C -0.145 4.145 27 C -0.136 4.136 28 C -0.178 4.178 29 C -0.178 4.178 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.400 0.600 34 H 0.076 0.924 35 H 0.100 0.900 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.397 0.603 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.269 0.731 42 H 0.095 0.905 43 H 0.072 0.928 44 H 0.116 0.884 45 H 0.093 0.907 46 H 0.095 0.905 47 H 0.095 0.905 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.975 8.283 -28.907 33.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.101 4.101 3 H 0.115 0.885 4 C 0.309 3.691 5 O -0.409 6.409 6 N -0.364 5.364 7 C 0.012 3.988 8 H 0.122 0.878 9 C -0.174 4.174 10 C -0.142 4.142 11 H 0.113 0.887 12 C 0.007 3.993 13 N -0.392 5.392 14 C 0.316 3.684 15 O -0.393 6.393 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.685 4.685 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.200 1.200 26 C -0.184 4.184 27 C -0.155 4.155 28 C -0.215 4.215 29 C -0.215 4.215 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.235 0.765 34 H 0.094 0.906 35 H 0.119 0.881 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.231 0.769 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.079 0.921 42 H 0.113 0.887 43 H 0.091 0.909 44 H 0.134 0.866 45 H 0.111 0.889 46 H 0.113 0.887 47 H 0.114 0.886 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 15.744 7.566 -27.180 32.309 hybrid contribution -2.648 0.185 -1.419 3.010 sum 13.095 7.751 -28.599 32.396 Atomic orbital electron populations 1.21768 0.92327 1.03191 1.02735 1.20869 0.97548 0.99926 0.91778 0.88528 1.20569 0.79672 0.84470 0.84416 1.90704 1.37459 1.26133 1.86630 1.45703 1.53734 1.31899 1.05100 1.21892 0.98256 0.94749 0.83867 0.87821 1.23295 0.96688 1.00280 0.97091 1.22856 0.97555 0.98426 0.95338 0.88738 1.21264 0.82410 1.01296 0.94319 1.45981 1.09635 1.74408 1.09205 1.20313 0.90080 0.75683 0.82275 1.90703 1.59148 1.49488 1.39939 1.23530 0.94287 1.04421 1.08177 1.85396 1.10106 1.91542 0.96319 1.22832 0.93564 1.55700 0.96414 0.90991 1.24987 0.99292 0.94723 0.94527 1.70009 1.36457 1.45629 0.98184 0.86227 0.82971 0.78887 0.77429 1.19944 1.20791 1.19957 1.23547 0.99246 0.96970 0.98614 1.22046 1.03595 1.00168 0.89689 1.23025 0.92615 1.01834 1.03986 1.22993 0.98143 1.03259 0.97065 0.91156 0.91719 0.92019 0.76494 0.90565 0.88139 0.91548 0.91408 0.76939 0.89301 0.89272 0.92123 0.88689 0.90915 0.86575 0.88891 0.88692 0.88612 0.88694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.60 8.93 37.16 0.33 -0.27 16 2 C -0.08 -0.44 2.88 -91.77 -0.26 -0.71 16 3 H 0.10 0.39 7.90 -51.93 -0.41 -0.02 16 4 C 0.52 4.28 7.15 -10.98 -0.08 4.20 16 5 O -0.53 -6.62 15.25 5.56 0.08 -6.53 16 6 N -0.71 -4.34 5.15 -52.92 -0.27 -4.61 16 7 C 0.12 0.83 4.33 -67.02 -0.29 0.54 16 8 H 0.10 0.91 7.47 -51.93 -0.39 0.52 16 9 C -0.13 -0.79 7.39 -25.92 -0.19 -0.98 16 10 C -0.12 -0.84 3.62 -89.81 -0.33 -1.16 16 11 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 12 C 0.13 1.39 5.50 -4.04 -0.02 1.37 16 13 N -0.74 -9.35 5.56 -60.29 -0.33 -9.68 16 14 C 0.53 9.76 7.85 -10.98 -0.09 9.68 16 15 O -0.52 -11.74 15.86 5.55 0.09 -11.65 16 16 C -0.15 -3.07 6.16 36.01 0.22 -2.85 16 17 S -0.06 -1.63 20.57 -107.50 -2.21 -3.85 16 18 C -0.54 -15.28 9.50 30.94 0.29 -14.99 16 19 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.15 13.22 55.49 0.73 -25.42 16 22 Si 0.92 21.34 29.55 -169.99 -5.02 16.32 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 26 C -0.15 -1.08 7.44 -25.83 -0.19 -1.27 16 27 C -0.14 -0.91 4.75 -90.62 -0.43 -1.34 16 28 C -0.18 -1.02 10.18 -26.70 -0.27 -1.29 16 29 C -0.18 -0.88 9.74 -26.70 -0.26 -1.14 16 30 H 0.07 0.23 7.29 -51.93 -0.38 -0.14 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.18 7.56 -51.93 -0.39 -0.21 16 33 H 0.40 1.47 8.12 -40.82 -0.33 1.14 16 34 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.10 0.59 8.10 -51.93 -0.42 0.17 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.79 7.88 -51.93 -0.41 0.39 16 38 H 0.40 3.88 8.47 -40.82 -0.35 3.53 16 39 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 40 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 41 H 0.27 7.54 8.31 -40.82 -0.34 7.21 16 42 H 0.09 0.77 7.92 -51.93 -0.41 0.35 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.12 1.00 7.47 -51.93 -0.39 0.62 16 45 H 0.09 0.46 8.05 -51.93 -0.42 0.04 16 46 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.10 0.44 8.14 -51.92 -0.42 0.02 16 48 H 0.09 0.37 7.61 -51.93 -0.40 -0.02 16 LS Contribution 410.63 15.07 6.19 6.19 Total: -1.00 -36.49 410.63 -10.45 -46.94 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -8.04 Total: 0.49 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -1.66 Total: -8.20 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: 0.13 Total: -39.71 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: 0.17 Total: -18.18 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -36.49 -10.45 -46.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001679048030.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.614 kcal (2) G-P(sol) polarization free energy of solvation -36.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds