Wall clock time and date at job start Sat Apr 11 2020 06:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.46988 * 2 1 4 4 C 1.50707 * 109.46759 * 119.99616 * 2 1 3 5 5 O 1.21278 * 119.99582 * 120.00284 * 4 2 1 6 6 N 1.34777 * 120.00059 * 299.99887 * 4 2 1 7 7 C 1.46498 * 120.00030 * 180.02562 * 6 4 2 8 8 H 1.09006 * 112.85056 * 23.79814 * 7 6 4 9 9 C 1.53781 * 113.61650 * 154.99967 * 7 6 4 10 10 C 1.53785 * 87.07896 * 89.11524 * 9 7 6 11 11 H 1.09002 * 113.61186 * 270.80050 * 10 9 7 12 12 C 1.52997 * 113.61646 * 139.98451 * 10 9 7 13 13 N 1.46499 * 109.47555 * 176.52802 * 12 10 9 14 14 C 1.34777 * 120.00199 * 180.02562 * 13 12 10 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 12 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 12 17 17 S 1.80999 * 109.46903 * 179.72354 * 16 14 13 18 18 C 1.76200 * 99.99730 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00351 * 0.02562 * 18 17 16 20 20 C 1.38796 * 120.00095 * 179.97438 * 18 17 16 21 21 N 1.31634 * 119.99941 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00384 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47035 * 59.99524 * 22 20 18 24 24 H 1.48499 * 109.47381 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46580 * 299.99884 * 22 20 18 26 26 C 1.53777 * 87.17707 * 25.38772 * 10 9 7 27 27 C 1.52992 * 109.47130 * 239.99607 * 2 1 3 28 28 C 1.53000 * 117.49845 * 128.74809 * 27 2 1 29 29 C 1.52998 * 117.50013 * 60.09276 * 27 2 1 30 30 H 1.09001 * 109.47097 * 60.00448 * 1 2 3 31 31 H 1.08996 * 109.46988 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47123 * 300.00482 * 1 2 3 33 33 H 0.97000 * 120.00041 * 0.02562 * 6 4 2 34 34 H 1.08994 * 113.61430 * 334.56973 * 9 7 6 35 35 H 1.08995 * 113.61157 * 203.65951 * 9 7 6 36 36 H 1.08998 * 109.47382 * 56.52364 * 12 10 9 37 37 H 1.09002 * 109.47216 * 296.52800 * 12 10 9 38 38 H 0.97000 * 119.99484 * 359.97438 * 13 12 10 39 39 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 40 40 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 41 41 H 0.97002 * 120.00288 * 179.97438 * 21 20 18 42 42 H 1.09002 * 113.61320 * 89.15693 * 26 10 9 43 43 H 1.08998 * 113.61710 * 220.06313 * 26 10 9 44 44 H 1.08998 * 115.54856 * 274.41618 * 27 2 1 45 45 H 1.08995 * 117.49933 * 0.02562 * 28 27 2 46 46 H 1.09006 * 117.49790 * 145.02014 * 28 27 2 47 47 H 1.09011 * 117.49697 * 214.97986 * 29 27 2 48 48 H 1.08998 * 117.49763 * 359.96671 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 2.7296 -1.6964 1.1193 6 7 1.7067 -0.2498 2.4547 7 6 2.1954 -0.9400 3.6509 8 1 3.1009 -1.5180 3.4659 9 6 2.2848 -0.0351 4.8910 10 6 0.8300 -0.4342 5.1900 11 1 0.0932 0.2186 4.7219 12 6 0.5531 -0.6736 6.6755 13 7 -0.8698 -0.9656 6.8662 14 6 -1.3477 -1.2108 8.1023 15 8 -0.5996 -1.1902 9.0567 16 6 -2.8102 -1.5173 8.2976 17 16 -3.1367 -1.8062 10.0544 18 6 -4.8675 -2.1306 9.9945 19 1 -5.3886 -2.1093 9.0488 20 6 -5.5611 -2.4148 11.1627 21 7 -4.9258 -2.4423 12.3152 22 14 -7.3959 -2.7594 11.0993 23 1 -7.6480 -3.9410 10.2359 24 1 -7.8962 -3.0319 12.4707 25 1 -8.1023 -1.5786 10.5408 26 6 1.1013 -1.7242 4.3982 27 6 2.0400 -0.7213 -1.2491 28 6 3.0764 0.0038 -2.1100 29 6 1.6376 -0.1484 -2.6095 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.1487 0.5387 2.5436 34 1 2.4074 1.0214 4.6526 35 1 2.9963 -0.3870 5.6379 36 1 0.8203 0.2177 7.2432 37 1 1.1472 -1.5182 7.0244 38 1 -1.4681 -0.9817 6.1028 39 1 -3.4076 -0.6740 7.9509 40 1 -3.0740 -2.4081 7.7277 41 1 -5.4105 -2.6405 13.1317 42 1 1.4888 -2.5388 5.0101 43 1 0.2701 -2.0294 3.7625 44 1 2.1253 -1.8046 -1.1645 45 1 3.3951 0.9946 -1.7862 46 1 3.8432 -0.6026 -2.5921 47 1 1.4583 -0.8550 -3.4201 48 1 1.0090 0.7420 -2.6146 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001679048030.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:37 Heat of formation + Delta-G solvation = -69.474504 kcal Electronic energy + Delta-G solvation = -25927.676628 eV Core-core repulsion = 22108.621505 eV Total energy + Delta-G solvation = -3819.055123 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.51653 -40.62149 -39.64706 -38.03291 -35.75793 -34.58003 -34.41904 -32.66764 -31.23702 -28.32061 -27.57959 -26.66871 -26.02936 -23.82467 -23.13059 -22.57957 -21.78366 -20.61886 -20.29513 -19.72533 -18.43950 -17.76883 -17.39259 -17.04229 -16.87094 -16.69499 -16.28482 -16.09996 -15.82181 -15.44842 -15.39483 -14.91903 -14.69727 -14.54744 -14.46294 -13.93520 -13.88054 -13.48657 -13.38852 -13.16369 -13.14349 -12.98307 -12.86364 -12.77928 -12.63125 -12.29549 -11.99266 -11.85749 -11.75954 -11.62782 -11.30376 -11.23832 -11.12322 -10.94225 -10.88073 -10.70646 -10.27120 -10.09809 -10.00397 -8.66171 -8.33876 -6.12210 1.27973 1.44383 1.47848 1.57540 1.62630 1.63801 2.12039 2.27320 2.33135 2.93027 3.00169 3.32500 3.49671 3.58681 3.65495 3.67694 3.82595 3.88649 4.00345 4.04650 4.13993 4.30220 4.32675 4.34698 4.47377 4.50753 4.52090 4.60027 4.68714 4.78701 4.81575 4.85826 4.86369 4.91115 4.99506 5.04992 5.07413 5.12682 5.22818 5.26374 5.31581 5.37673 5.42030 5.49060 5.66097 6.20091 6.54067 6.57021 7.07240 7.27779 7.27853 8.75058 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020135 B = 0.001605 C = 0.001511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.295300 B =17444.773225 C =18524.381774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.072 4.072 3 H 0.119 0.881 4 C 0.517 3.483 5 O -0.584 6.584 6 N -0.698 5.698 7 C 0.117 3.883 8 H 0.082 0.918 9 C -0.123 4.123 10 C -0.107 4.107 11 H 0.119 0.881 12 C 0.129 3.871 13 N -0.710 5.710 14 C 0.531 3.469 15 O -0.569 6.569 16 C -0.130 4.130 17 S -0.154 6.154 18 C -0.548 4.548 19 H 0.083 0.917 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 0.998 3.002 23 H -0.263 1.263 24 H -0.279 1.279 25 H -0.261 1.261 26 C -0.146 4.146 27 C -0.155 4.155 28 C -0.184 4.184 29 C -0.162 4.162 30 H 0.083 0.917 31 H 0.048 0.952 32 H 0.079 0.921 33 H 0.416 0.584 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.062 0.938 37 H 0.055 0.945 38 H 0.416 0.584 39 H 0.111 0.889 40 H 0.108 0.892 41 H 0.271 0.729 42 H 0.084 0.916 43 H 0.071 0.929 44 H 0.086 0.914 45 H 0.104 0.896 46 H 0.088 0.912 47 H 0.096 0.904 48 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.316 10.126 -31.365 35.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.093 4.093 3 H 0.137 0.863 4 C 0.305 3.695 5 O -0.464 6.464 6 N -0.350 5.350 7 C 0.011 3.989 8 H 0.100 0.900 9 C -0.162 4.162 10 C -0.125 4.125 11 H 0.137 0.863 12 C 0.006 3.994 13 N -0.364 5.364 14 C 0.317 3.683 15 O -0.447 6.447 16 C -0.281 4.281 17 S 0.074 5.926 18 C -0.696 4.696 19 H 0.101 0.899 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.820 3.180 23 H -0.187 1.187 24 H -0.204 1.204 25 H -0.186 1.186 26 C -0.185 4.185 27 C -0.173 4.173 28 C -0.221 4.221 29 C -0.199 4.199 30 H 0.102 0.898 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.254 0.746 34 H 0.114 0.886 35 H 0.118 0.882 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.253 0.747 39 H 0.129 0.871 40 H 0.126 0.874 41 H 0.080 0.920 42 H 0.102 0.898 43 H 0.090 0.910 44 H 0.104 0.896 45 H 0.122 0.878 46 H 0.106 0.894 47 H 0.115 0.885 48 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 14.068 9.449 -29.699 34.194 hybrid contribution -2.011 -0.396 -0.761 2.187 sum 12.057 9.053 -30.460 33.987 Atomic orbital electron populations 1.21783 0.90988 1.02636 1.04312 1.20878 0.98460 1.00281 0.89659 0.86275 1.21129 0.78844 0.83885 0.85605 1.90688 1.39860 1.28479 1.87349 1.45586 1.53236 1.31974 1.04231 1.21792 0.97403 0.95146 0.84574 0.89983 1.23248 0.95791 1.01119 0.96010 1.22810 0.98851 0.98462 0.92407 0.86269 1.21426 0.80520 1.00561 0.96919 1.45734 1.10953 1.71891 1.07783 1.20076 0.89101 0.75740 0.83399 1.90693 1.59914 1.52171 1.41943 1.23376 0.96069 1.06136 1.02503 1.85585 1.11113 1.92049 1.03899 1.23185 0.93627 1.55627 0.97151 0.89860 1.26126 1.04894 0.94144 0.93930 1.70181 1.38723 1.46797 0.99067 0.85008 0.75985 0.79313 0.77717 1.18726 1.20427 1.18566 1.23530 0.99282 0.97083 0.98620 1.21992 1.05185 0.98873 0.91278 1.23108 0.92977 1.02101 1.03892 1.23064 0.97588 1.03525 0.95723 0.89771 0.93325 0.90252 0.74606 0.88635 0.88237 0.92004 0.92678 0.74727 0.87092 0.87381 0.92005 0.89754 0.90994 0.89558 0.87754 0.89390 0.88532 0.86871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 8.93 71.98 0.64 -0.16 16 2 C -0.07 -0.67 2.88 -11.54 -0.03 -0.70 16 3 H 0.12 0.59 7.90 -2.39 -0.02 0.57 16 4 C 0.52 8.04 7.15 87.66 0.63 8.67 16 5 O -0.58 -14.99 15.25 -3.02 -0.05 -15.04 16 6 N -0.70 -7.05 5.15 -439.74 -2.27 -9.31 16 7 C 0.12 1.49 4.33 45.58 0.20 1.69 16 8 H 0.08 1.47 7.47 -2.38 -0.02 1.45 16 9 C -0.12 -1.15 7.39 31.12 0.23 -0.92 16 10 C -0.11 -1.16 3.62 -10.27 -0.04 -1.19 16 11 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 12 C 0.13 2.51 5.50 86.38 0.47 2.99 16 13 N -0.71 -16.40 5.56 -463.06 -2.57 -18.97 16 14 C 0.53 19.08 7.85 87.66 0.69 19.76 16 15 O -0.57 -26.14 15.86 -3.04 -0.05 -26.18 16 16 C -0.13 -5.03 6.16 71.24 0.44 -4.59 16 17 S -0.15 -8.51 20.57 -56.49 -1.16 -9.67 16 18 C -0.55 -31.17 9.50 67.95 0.65 -30.53 16 19 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 20 C 0.01 0.79 5.49 84.86 0.47 1.25 16 21 N -0.91 -55.95 13.22 21.65 0.29 -55.66 16 22 Si 1.00 43.29 29.55 68.60 2.03 45.31 16 23 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 24 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 25 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 26 C -0.15 -1.95 7.44 31.18 0.23 -1.72 16 27 C -0.15 -1.98 4.75 -10.80 -0.05 -2.03 16 28 C -0.18 -1.95 10.18 30.62 0.31 -1.64 16 29 C -0.16 -1.34 9.74 30.61 0.30 -1.05 16 30 H 0.08 0.28 7.29 -2.39 -0.02 0.26 16 31 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.08 0.18 7.56 -2.38 -0.02 0.16 16 33 H 0.42 1.55 8.12 -92.71 -0.75 0.79 16 34 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.10 1.01 8.10 -2.39 -0.02 0.99 16 36 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.05 1.26 7.88 -2.39 -0.02 1.24 16 38 H 0.42 6.65 8.47 -92.71 -0.79 5.86 16 39 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 40 H 0.11 3.79 8.14 -2.40 -0.02 3.77 16 41 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 42 H 0.08 1.33 7.92 -2.39 -0.02 1.31 16 43 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.09 1.62 7.47 -2.39 -0.02 1.61 16 45 H 0.10 0.85 8.05 -2.39 -0.02 0.83 16 46 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 47 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 48 H 0.11 0.53 7.61 -2.39 -0.02 0.52 16 Total: -1.00 -83.69 410.63 0.78 -82.91 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -0.57 Total: 16.80 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: 5.13 Total: -10.18 kcal Atomic # 7 Polarization: -79.39 SS G_CDS: -4.55 Total: -83.95 kcal Atomic # 8 Polarization: -41.13 SS G_CDS: -0.09 Total: -41.22 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: -8.51 SS G_CDS: -1.16 Total: -9.67 kcal Total: -83.69 0.78 -82.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001679048030.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.433 kcal (2) G-P(sol) polarization free energy of solvation -83.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds