Wall clock time and date at job start Sat Apr 11 2020 06:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21279 * 119.99543 * 2 1 4 4 N 1.34770 * 119.99972 * 179.97438 * 2 1 3 5 5 C 1.47421 * 125.65197 * 4.81112 * 4 2 1 6 6 C 1.54905 * 104.83607 * 204.17700 * 5 4 2 7 7 C 1.55157 * 101.58191 * 322.99108 * 6 5 4 8 8 C 1.47024 * 125.64733 * 184.86615 * 4 2 1 9 9 H 1.09004 * 110.01083 * 59.40247 * 8 4 2 10 10 C 1.52990 * 109.88287 * 298.31203 * 8 4 2 11 11 H 1.09005 * 109.59055 * 54.46049 * 10 8 4 12 12 C 1.53190 * 109.70540 * 294.10670 * 10 8 4 13 13 C 1.53043 * 109.31467 * 185.51144 * 12 10 8 14 14 C 1.53031 * 109.54228 * 61.36122 * 13 12 10 15 15 C 1.53195 * 109.31226 * 298.63994 * 14 13 12 16 16 N 1.46923 * 109.58852 * 174.74134 * 10 8 4 17 17 C 1.34777 * 120.63073 * 353.51874 * 16 10 8 18 18 O 1.21285 * 119.99881 * 2.00415 * 17 16 10 19 19 C 1.50700 * 120.00085 * 182.00068 * 17 16 10 20 20 S 1.81000 * 109.47309 * 179.97438 * 19 17 16 21 21 C 1.76199 * 100.00372 * 180.02562 * 20 19 17 22 22 H 1.08001 * 119.99455 * 359.97438 * 21 20 19 23 23 C 1.38789 * 119.99972 * 180.02562 * 21 20 19 24 24 N 1.31628 * 120.00401 * 0.02562 * 23 21 20 25 25 Si 1.86809 * 119.99858 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46686 * 60.00379 * 25 23 21 27 27 H 1.48502 * 109.46765 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47208 * 300.00224 * 25 23 21 29 29 H 1.09000 * 109.46676 * 270.00335 * 1 2 3 30 30 H 1.08992 * 109.47106 * 29.99904 * 1 2 3 31 31 H 1.09001 * 109.46886 * 150.00221 * 1 2 3 32 32 H 1.09003 * 110.36694 * 85.33387 * 5 4 2 33 33 H 1.09006 * 110.45899 * 323.06632 * 5 4 2 34 34 H 1.09002 * 111.00892 * 204.91592 * 6 5 4 35 35 H 1.09000 * 111.03916 * 81.07928 * 6 5 4 36 36 H 1.09004 * 110.71983 * 277.14383 * 7 6 5 37 37 H 1.08995 * 110.72496 * 153.86487 * 7 6 5 38 38 H 1.09008 * 109.49403 * 305.45507 * 12 10 8 39 39 H 1.08997 * 109.49907 * 65.55162 * 12 10 8 40 40 H 1.09007 * 109.45640 * 301.34172 * 13 12 10 41 41 H 1.09000 * 109.44748 * 181.38120 * 13 12 10 42 42 H 1.08998 * 109.50413 * 178.68573 * 14 13 12 43 43 H 1.09000 * 109.49981 * 58.58715 * 14 13 12 44 44 H 1.09004 * 109.58531 * 294.84244 * 15 14 13 45 45 H 1.09007 * 109.58468 * 174.42549 * 15 14 13 46 46 H 1.08997 * 109.47284 * 299.99959 * 19 17 16 47 47 H 1.09004 * 109.47313 * 59.99916 * 19 17 16 48 48 H 0.97007 * 120.00382 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.5768 -2.5082 -0.0993 6 6 2.6118 -3.4590 0.5519 7 6 3.9507 -2.8256 0.0898 8 6 3.6403 -1.3139 0.1019 9 1 3.9961 -0.8699 1.0317 10 6 4.3157 -0.6344 -1.0908 11 1 3.9843 0.4019 -1.1569 12 6 3.9500 -1.3737 -2.3817 13 6 4.7368 -0.7735 -3.5491 14 6 6.2364 -0.9496 -3.3000 15 6 6.6281 -0.2054 -2.0194 16 7 5.7744 -0.6749 -0.9197 17 6 6.3191 -1.1336 0.2246 18 8 5.6049 -1.5520 1.1111 19 6 7.8155 -1.1269 0.4025 20 16 8.2326 -1.7986 2.0307 21 6 9.9893 -1.6755 1.9717 22 1 10.4732 -1.2741 1.0936 23 6 10.7511 -2.0953 3.0532 24 7 10.1613 -2.5859 4.1229 25 14 12.6136 -1.9654 2.9904 26 1 13.0047 -0.5447 2.8060 27 1 13.1884 -2.4756 4.2610 28 1 13.1280 -2.7720 1.8546 29 1 -0.3633 0.0001 1.0277 30 1 -0.3633 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 1.4197 -2.7766 -1.1441 33 1 0.6338 -2.5428 0.4463 34 1 2.5064 -4.4736 0.1677 35 1 2.5272 -3.4443 1.6385 36 1 4.2079 -3.1583 -0.9159 37 1 4.7510 -3.0606 0.7914 38 1 4.2000 -2.4298 -2.2793 39 1 2.8817 -1.2689 -2.5708 40 1 4.5052 0.2882 -3.6353 41 1 4.4600 -1.2818 -4.4727 42 1 6.7955 -0.5428 -4.1426 43 1 6.4648 -2.0096 -3.1889 44 1 6.4852 0.8659 -2.1612 45 1 7.6727 -0.4087 -1.7837 46 1 8.2763 -1.7393 -0.3725 47 1 8.1859 -0.1045 0.3259 48 1 10.6937 -2.8789 4.8790 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688079737.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:51 Heat of formation + Delta-G solvation = -39.503240 kcal Electronic energy + Delta-G solvation = -29235.393592 eV Core-core repulsion = 25417.638121 eV Total energy + Delta-G solvation = -3817.755471 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.13510 -39.34921 -37.27568 -37.05806 -33.00004 -32.50283 -32.40885 -31.58602 -29.53225 -29.05249 -27.75937 -25.51324 -24.87778 -23.92329 -22.57596 -21.42001 -20.78989 -19.25244 -18.64505 -17.56717 -17.27247 -16.45505 -16.11834 -15.64312 -15.34397 -15.01568 -14.80525 -14.77787 -14.36209 -14.21403 -14.10625 -13.73465 -13.58276 -13.12155 -13.02097 -12.94274 -12.68122 -12.56065 -12.45502 -12.32543 -12.04483 -11.89982 -11.73752 -11.28314 -11.06138 -11.04478 -10.95513 -10.89344 -10.77006 -10.66062 -10.52156 -10.18022 -9.83574 -9.78866 -9.05978 -9.03326 -8.40542 -8.24628 -8.21886 -6.49289 -6.21641 -3.91758 2.60812 2.80103 3.00908 3.13194 3.23464 3.27720 3.31303 3.64485 4.20632 4.43122 4.55507 4.62623 4.69782 4.72406 4.89906 4.94582 4.98842 5.06138 5.10997 5.13669 5.16463 5.21765 5.25573 5.32909 5.44188 5.52458 5.55597 5.59654 5.64070 5.69439 5.73971 5.81456 5.85069 5.88715 5.91306 5.93874 6.01134 6.11991 6.16504 6.21133 6.23974 6.53272 6.73932 6.82028 7.57107 7.59098 7.62137 8.17009 8.35009 8.61304 9.23878 10.85629 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015786 B = 0.003251 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.307902 B = 8609.624488 C = 9476.415015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.521 3.479 3 O -0.547 6.547 4 N -0.616 5.616 5 C 0.099 3.901 6 C -0.135 4.135 7 C -0.133 4.133 8 C 0.136 3.864 9 H 0.122 0.878 10 C 0.139 3.861 11 H 0.084 0.916 12 C -0.132 4.132 13 C -0.118 4.118 14 C -0.134 4.134 15 C 0.108 3.892 16 N -0.609 5.609 17 C 0.528 3.472 18 O -0.504 6.504 19 C -0.151 4.151 20 S -0.059 6.059 21 C -0.535 4.535 22 H 0.071 0.929 23 C 0.075 3.925 24 N -0.868 5.868 25 Si 0.917 3.083 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.120 0.880 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.066 0.934 45 H 0.091 0.909 46 H 0.087 0.913 47 H 0.088 0.912 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.572 0.136 -15.437 23.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.310 3.690 3 O -0.424 6.424 4 N -0.352 5.352 5 C -0.024 4.024 6 C -0.173 4.173 7 C -0.170 4.170 8 C 0.035 3.965 9 H 0.139 0.861 10 C 0.034 3.966 11 H 0.102 0.898 12 C -0.170 4.170 13 C -0.156 4.156 14 C -0.173 4.173 15 C -0.015 4.015 16 N -0.345 5.345 17 C 0.317 3.683 18 O -0.380 6.380 19 C -0.301 4.301 20 S 0.168 5.832 21 C -0.684 4.684 22 H 0.089 0.911 23 C -0.135 4.135 24 N -0.503 5.503 25 Si 0.743 3.257 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.200 1.200 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.137 0.863 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.092 0.908 43 H 0.087 0.913 44 H 0.085 0.915 45 H 0.109 0.891 46 H 0.105 0.895 47 H 0.106 0.894 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.313 0.087 -13.936 23.012 hybrid contribution 1.971 0.552 -1.278 2.413 sum -16.341 0.639 -15.214 22.336 Atomic orbital electron populations 1.21893 0.92067 1.04404 1.04584 1.20438 0.90147 0.82358 0.76015 1.90716 1.70667 1.30756 1.50309 1.48940 1.08382 1.05636 1.72279 1.22334 0.97158 0.82568 1.00314 1.22790 0.95078 0.98076 1.01324 1.23326 0.98445 0.92339 1.02861 1.22572 0.77426 0.97301 0.99245 0.86052 1.21566 0.79617 1.00570 0.94809 0.89823 1.22077 0.99783 1.00690 0.94483 1.21498 0.95040 1.01118 0.97902 1.21915 0.96457 1.01469 0.97424 1.21729 0.95333 0.98285 0.86158 1.48052 1.05738 1.65028 1.15655 1.20275 0.90185 0.76445 0.81379 1.90537 1.60737 1.44887 1.41874 1.23577 0.93894 1.05231 1.07420 1.85286 1.06318 1.81036 1.10564 1.22817 0.91349 1.49042 1.05151 0.91063 1.24969 0.99449 0.94526 0.94535 1.70002 1.36084 1.39221 1.05000 0.86249 0.83161 0.78651 0.77595 1.19943 1.20825 1.19955 0.89001 0.89183 0.90457 0.91759 0.90903 0.90374 0.90479 0.91319 0.86265 0.90762 0.91550 0.91988 0.91926 0.90799 0.91307 0.91545 0.89105 0.89462 0.89410 0.92158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 9.72 36.01 0.35 -1.03 16 2 C 0.52 6.80 7.77 -10.98 -0.09 6.71 16 3 O -0.55 -9.53 15.90 5.56 0.09 -9.44 16 4 N -0.62 -7.56 2.71 -163.02 -0.44 -8.00 16 5 C 0.10 0.88 6.34 -2.53 -0.02 0.87 16 6 C -0.13 -1.39 7.08 -24.58 -0.17 -1.56 16 7 C -0.13 -1.79 5.09 -24.90 -0.13 -1.92 16 8 C 0.14 2.00 2.05 -66.96 -0.14 1.87 16 9 H 0.12 2.32 5.82 -52.18 -0.30 2.02 16 10 C 0.14 1.94 2.66 -67.61 -0.18 1.76 16 11 H 0.08 1.36 6.56 -51.93 -0.34 1.01 16 12 C -0.13 -1.45 4.97 -26.61 -0.13 -1.58 16 13 C -0.12 -1.12 5.88 -26.69 -0.16 -1.28 16 14 C -0.13 -1.29 6.08 -26.61 -0.16 -1.45 16 15 C 0.11 1.27 6.34 -3.71 -0.02 1.25 16 16 N -0.61 -8.97 2.95 -165.22 -0.49 -9.46 16 17 C 0.53 9.64 7.24 -10.99 -0.08 9.56 16 18 O -0.50 -10.23 8.75 5.55 0.05 -10.18 16 19 C -0.15 -3.01 4.51 36.01 0.16 -2.84 16 20 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 21 C -0.54 -15.09 9.50 30.94 0.29 -14.80 16 22 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 23 C 0.07 2.11 5.49 -17.44 -0.10 2.01 16 24 N -0.87 -25.93 13.22 55.49 0.73 -25.19 16 25 Si 0.92 21.32 29.55 -169.99 -5.02 16.29 16 26 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 29 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.45 7.00 -51.93 -0.36 0.08 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.50 7.36 -51.93 -0.38 0.12 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 0.86 5.22 -51.93 -0.27 0.59 16 37 H 0.12 2.04 5.59 -51.89 -0.29 1.75 16 38 H 0.07 0.82 5.55 -51.92 -0.29 0.54 16 39 H 0.07 0.70 7.97 -51.93 -0.41 0.28 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.09 1.06 5.94 -51.93 -0.31 0.75 16 46 H 0.09 1.61 7.61 -51.92 -0.39 1.22 16 47 H 0.09 1.68 8.02 -51.91 -0.42 1.27 16 48 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 375.87 15.07 5.66 5.66 Total: -1.00 -33.95 375.87 -9.74 -43.69 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -7.54 Total: 2.83 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -0.56 Total: -2.43 kcal Atomic # 7 Polarization: -42.46 SS G_CDS: -0.19 Total: -42.66 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: 0.14 Total: -19.62 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.95 -9.74 -43.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688079737.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.187 kcal (2) G-P(sol) polarization free energy of solvation -33.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds