Wall clock time and date at job start Sat Apr 11 2020 06:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21279 * 119.99543 * 2 1 4 4 N 1.34770 * 119.99972 * 179.97438 * 2 1 3 5 5 C 1.47421 * 125.65197 * 4.81112 * 4 2 1 6 6 C 1.54905 * 104.83607 * 204.17700 * 5 4 2 7 7 C 1.55157 * 101.58191 * 322.99108 * 6 5 4 8 8 C 1.47024 * 125.64733 * 184.86615 * 4 2 1 9 9 H 1.09004 * 110.01083 * 59.40247 * 8 4 2 10 10 C 1.52990 * 109.88287 * 298.31203 * 8 4 2 11 11 H 1.09005 * 109.59055 * 54.46049 * 10 8 4 12 12 C 1.53190 * 109.70540 * 294.10670 * 10 8 4 13 13 C 1.53043 * 109.31467 * 185.51144 * 12 10 8 14 14 C 1.53031 * 109.54228 * 61.36122 * 13 12 10 15 15 C 1.53195 * 109.31226 * 298.63994 * 14 13 12 16 16 N 1.46923 * 109.58852 * 174.74134 * 10 8 4 17 17 C 1.34777 * 120.63073 * 353.51874 * 16 10 8 18 18 O 1.21285 * 119.99881 * 2.00415 * 17 16 10 19 19 C 1.50700 * 120.00085 * 182.00068 * 17 16 10 20 20 S 1.81000 * 109.47309 * 179.97438 * 19 17 16 21 21 C 1.76199 * 100.00372 * 180.02562 * 20 19 17 22 22 H 1.08001 * 119.99455 * 359.97438 * 21 20 19 23 23 C 1.38789 * 119.99972 * 180.02562 * 21 20 19 24 24 N 1.31628 * 120.00401 * 0.02562 * 23 21 20 25 25 Si 1.86809 * 119.99858 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46686 * 60.00379 * 25 23 21 27 27 H 1.48502 * 109.46765 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47208 * 300.00224 * 25 23 21 29 29 H 1.09000 * 109.46676 * 270.00335 * 1 2 3 30 30 H 1.08992 * 109.47106 * 29.99904 * 1 2 3 31 31 H 1.09001 * 109.46886 * 150.00221 * 1 2 3 32 32 H 1.09003 * 110.36694 * 85.33387 * 5 4 2 33 33 H 1.09006 * 110.45899 * 323.06632 * 5 4 2 34 34 H 1.09002 * 111.00892 * 204.91592 * 6 5 4 35 35 H 1.09000 * 111.03916 * 81.07928 * 6 5 4 36 36 H 1.09004 * 110.71983 * 277.14383 * 7 6 5 37 37 H 1.08995 * 110.72496 * 153.86487 * 7 6 5 38 38 H 1.09008 * 109.49403 * 305.45507 * 12 10 8 39 39 H 1.08997 * 109.49907 * 65.55162 * 12 10 8 40 40 H 1.09007 * 109.45640 * 301.34172 * 13 12 10 41 41 H 1.09000 * 109.44748 * 181.38120 * 13 12 10 42 42 H 1.08998 * 109.50413 * 178.68573 * 14 13 12 43 43 H 1.09000 * 109.49981 * 58.58715 * 14 13 12 44 44 H 1.09004 * 109.58531 * 294.84244 * 15 14 13 45 45 H 1.09007 * 109.58468 * 174.42549 * 15 14 13 46 46 H 1.08997 * 109.47284 * 299.99959 * 19 17 16 47 47 H 1.09004 * 109.47313 * 59.99916 * 19 17 16 48 48 H 0.97007 * 120.00382 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.5768 -2.5082 -0.0993 6 6 2.6118 -3.4590 0.5519 7 6 3.9507 -2.8256 0.0898 8 6 3.6403 -1.3139 0.1019 9 1 3.9961 -0.8699 1.0317 10 6 4.3157 -0.6344 -1.0908 11 1 3.9843 0.4019 -1.1569 12 6 3.9500 -1.3737 -2.3817 13 6 4.7368 -0.7735 -3.5491 14 6 6.2364 -0.9496 -3.3000 15 6 6.6281 -0.2054 -2.0194 16 7 5.7744 -0.6749 -0.9197 17 6 6.3191 -1.1336 0.2246 18 8 5.6049 -1.5520 1.1111 19 6 7.8155 -1.1269 0.4025 20 16 8.2326 -1.7986 2.0307 21 6 9.9893 -1.6755 1.9717 22 1 10.4732 -1.2741 1.0936 23 6 10.7511 -2.0953 3.0532 24 7 10.1613 -2.5859 4.1229 25 14 12.6136 -1.9654 2.9904 26 1 13.0047 -0.5447 2.8060 27 1 13.1884 -2.4756 4.2610 28 1 13.1280 -2.7720 1.8546 29 1 -0.3633 0.0001 1.0277 30 1 -0.3633 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 1.4197 -2.7766 -1.1441 33 1 0.6338 -2.5428 0.4463 34 1 2.5064 -4.4736 0.1677 35 1 2.5272 -3.4443 1.6385 36 1 4.2079 -3.1583 -0.9159 37 1 4.7510 -3.0606 0.7914 38 1 4.2000 -2.4298 -2.2793 39 1 2.8817 -1.2689 -2.5708 40 1 4.5052 0.2882 -3.6353 41 1 4.4600 -1.2818 -4.4727 42 1 6.7955 -0.5428 -4.1426 43 1 6.4648 -2.0096 -3.1889 44 1 6.4852 0.8659 -2.1612 45 1 7.6727 -0.4087 -1.7837 46 1 8.2763 -1.7393 -0.3725 47 1 8.1859 -0.1045 0.3259 48 1 10.6937 -2.8789 4.8790 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688079737.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:50 Heat of formation + Delta-G solvation = -61.110178 kcal Electronic energy + Delta-G solvation = -29236.330539 eV Core-core repulsion = 25417.638121 eV Total energy + Delta-G solvation = -3818.692418 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.29173 -40.48304 -38.47492 -38.09958 -34.59144 -34.14297 -33.48400 -32.56794 -30.54646 -30.27395 -28.75786 -27.66314 -25.95757 -24.88240 -23.56203 -22.34874 -21.96623 -20.23651 -20.09838 -19.31582 -18.40293 -17.46748 -17.22632 -16.94542 -16.88039 -16.64069 -16.05120 -16.00835 -15.60916 -15.29461 -15.13631 -14.94540 -14.61446 -14.44872 -14.30168 -14.17137 -13.83513 -13.65542 -13.35602 -13.22563 -13.16424 -13.07433 -12.88754 -12.85687 -12.68082 -12.61385 -12.13720 -11.90912 -11.81411 -11.72430 -11.59309 -11.50636 -11.22773 -11.12435 -10.92875 -10.29391 -10.26672 -9.58336 -9.40151 -8.65253 -8.34975 -6.12099 1.24708 1.42542 1.44096 1.53618 1.56689 1.63547 1.90601 2.26176 2.32253 2.98991 3.24990 3.50473 3.57852 3.71567 3.83246 3.86402 3.93570 4.03346 4.08471 4.15349 4.24829 4.28278 4.30048 4.44270 4.46963 4.51208 4.55699 4.61509 4.62920 4.68385 4.79405 4.88757 4.93526 5.01655 5.04084 5.06277 5.09830 5.12155 5.16555 5.22083 5.35234 5.40760 5.48917 5.57432 5.66005 6.18806 6.33112 6.63566 7.06347 7.14839 7.24374 8.73746 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015786 B = 0.003251 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.307902 B = 8609.624488 C = 9476.415015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.510 3.490 3 O -0.603 6.603 4 N -0.616 5.616 5 C 0.100 3.900 6 C -0.131 4.131 7 C -0.127 4.127 8 C 0.138 3.862 9 H 0.066 0.934 10 C 0.142 3.858 11 H 0.059 0.941 12 C -0.122 4.122 13 C -0.115 4.115 14 C -0.127 4.127 15 C 0.097 3.903 16 N -0.601 5.601 17 C 0.521 3.479 18 O -0.530 6.530 19 C -0.124 4.124 20 S -0.139 6.139 21 C -0.549 4.549 22 H 0.080 0.920 23 C 0.016 3.984 24 N -0.910 5.910 25 Si 0.995 3.005 26 H -0.264 1.264 27 H -0.278 1.278 28 H -0.261 1.261 29 H 0.104 0.896 30 H 0.095 0.905 31 H 0.110 0.890 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.060 0.940 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.059 0.941 41 H 0.087 0.913 42 H 0.099 0.901 43 H 0.066 0.934 44 H 0.074 0.926 45 H 0.091 0.909 46 H 0.105 0.895 47 H 0.095 0.905 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.530 -0.567 -18.623 26.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.301 3.699 3 O -0.485 6.485 4 N -0.351 5.351 5 C -0.021 4.021 6 C -0.168 4.168 7 C -0.164 4.164 8 C 0.035 3.965 9 H 0.084 0.916 10 C 0.038 3.962 11 H 0.077 0.923 12 C -0.160 4.160 13 C -0.153 4.153 14 C -0.165 4.165 15 C -0.025 4.025 16 N -0.335 5.335 17 C 0.309 3.691 18 O -0.408 6.408 19 C -0.275 4.275 20 S 0.089 5.911 21 C -0.697 4.697 22 H 0.098 0.902 23 C -0.189 4.189 24 N -0.546 5.546 25 Si 0.817 3.183 26 H -0.189 1.189 27 H -0.203 1.203 28 H -0.185 1.185 29 H 0.122 0.878 30 H 0.113 0.887 31 H 0.128 0.872 32 H 0.111 0.889 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.079 0.921 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.078 0.922 41 H 0.106 0.894 42 H 0.118 0.882 43 H 0.085 0.915 44 H 0.092 0.908 45 H 0.109 0.891 46 H 0.123 0.877 47 H 0.113 0.887 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -19.305 -0.634 -17.162 25.838 hybrid contribution 2.186 0.823 -0.298 2.355 sum -17.119 0.190 -17.460 24.453 Atomic orbital electron populations 1.21903 0.87621 1.06316 1.05916 1.21456 0.92194 0.81540 0.74692 1.90687 1.72177 1.32770 1.52865 1.49019 1.07353 1.07150 1.71529 1.22594 0.97359 0.79801 1.02337 1.22799 0.93572 0.99829 1.00644 1.23096 0.99017 0.91867 1.02444 1.22142 0.79401 0.97722 0.97193 0.91613 1.21540 0.78702 0.99591 0.96379 0.92312 1.22006 1.00706 1.00246 0.93018 1.21510 0.94499 1.01203 0.98054 1.21895 0.96991 1.01020 0.96620 1.22038 0.94880 0.99201 0.86353 1.48050 1.06667 1.63687 1.15144 1.20049 0.89313 0.77320 0.82389 1.90606 1.60933 1.46113 1.43124 1.23385 0.95640 1.05193 1.03281 1.85420 1.07036 1.82235 1.16434 1.23166 0.91667 1.49108 1.05714 0.90234 1.26078 1.05170 0.93782 0.93893 1.70166 1.38253 1.40330 1.05887 0.85049 0.76027 0.79149 0.78059 1.18921 1.20314 1.18518 0.87755 0.88664 0.87170 0.88853 0.87946 0.87619 0.92111 0.89982 0.90468 0.90454 0.90475 0.92178 0.89437 0.88213 0.91535 0.90750 0.89111 0.87720 0.88673 0.91999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 9.72 71.24 0.69 -1.46 16 2 C 0.51 13.09 7.77 87.66 0.68 13.77 16 3 O -0.60 -21.93 15.90 -3.03 -0.05 -21.98 16 4 N -0.62 -14.75 2.71 -788.07 -2.13 -16.88 16 5 C 0.10 1.49 6.34 86.85 0.55 2.04 16 6 C -0.13 -2.55 7.08 31.98 0.23 -2.32 16 7 C -0.13 -3.51 5.09 31.78 0.16 -3.34 16 8 C 0.14 4.26 2.05 45.34 0.09 4.35 16 9 H 0.07 2.78 5.82 -13.95 -0.08 2.70 16 10 C 0.14 4.03 2.66 44.97 0.12 4.15 16 11 H 0.06 1.99 6.56 -2.38 -0.02 1.97 16 12 C -0.12 -2.42 4.97 30.67 0.15 -2.27 16 13 C -0.12 -1.84 5.88 30.62 0.18 -1.66 16 14 C -0.13 -2.10 6.08 30.67 0.19 -1.92 16 15 C 0.10 2.20 6.34 86.36 0.55 2.75 16 16 N -0.60 -18.08 2.95 -795.03 -2.34 -20.42 16 17 C 0.52 20.05 7.24 87.66 0.63 20.68 16 18 O -0.53 -23.34 8.75 -3.04 -0.03 -23.36 16 19 C -0.12 -5.11 4.51 71.24 0.32 -4.79 16 20 S -0.14 -7.70 20.57 -56.49 -1.16 -8.86 16 21 C -0.55 -31.59 9.50 67.95 0.65 -30.95 16 22 H 0.08 4.28 7.80 -2.91 -0.02 4.25 16 23 C 0.02 0.90 5.49 84.86 0.47 1.36 16 24 N -0.91 -56.01 13.22 21.65 0.29 -55.73 16 25 Si 1.00 43.87 29.55 68.60 2.03 45.90 16 26 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 27 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 28 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 29 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.11 0.77 7.00 -2.39 -0.02 0.76 16 32 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.10 0.98 7.36 -2.38 -0.02 0.96 16 34 H 0.11 1.49 8.14 -2.39 -0.02 1.48 16 35 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.08 2.00 5.22 -2.38 -0.01 1.99 16 37 H 0.08 2.86 5.59 -9.36 -0.05 2.81 16 38 H 0.08 1.52 5.55 -2.38 -0.01 1.50 16 39 H 0.08 1.39 7.97 -2.39 -0.02 1.38 16 40 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 41 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 45 H 0.09 2.04 5.94 -2.38 -0.01 2.02 16 46 H 0.10 3.90 7.61 -2.40 -0.02 3.89 16 47 H 0.09 3.74 8.02 -2.39 -0.02 3.72 16 48 H 0.27 15.53 8.31 -92.70 -0.77 14.76 16 Total: -1.00 -81.07 375.87 3.11 -77.96 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 0.85 Total: 22.98 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: 5.66 Total: 0.39 kcal Atomic # 7 Polarization: -88.84 SS G_CDS: -4.19 Total: -93.03 kcal Atomic # 8 Polarization: -45.27 SS G_CDS: -0.07 Total: -45.34 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: -7.70 SS G_CDS: -1.16 Total: -8.86 kcal Total: -81.07 3.11 -77.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688079737.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.849 kcal (2) G-P(sol) polarization free energy of solvation -81.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds