Wall clock time and date at job start Sat Apr 11 2020 06:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21277 * 119.99855 * 2 1 4 4 N 1.34764 * 119.99831 * 179.97438 * 2 1 3 5 5 C 1.47429 * 125.64983 * 357.20026 * 4 2 1 6 6 C 1.54917 * 104.82774 * 204.14664 * 5 4 2 7 7 C 1.55154 * 101.58659 * 322.98749 * 6 5 4 8 8 C 1.47024 * 125.64667 * 177.22193 * 4 2 1 9 9 H 1.08996 * 110.01403 * 59.43386 * 8 4 2 10 10 C 1.53000 * 109.88322 * 298.33511 * 8 4 2 11 11 H 1.09001 * 109.70542 * 287.45039 * 10 8 4 12 12 C 1.53625 * 109.66064 * 48.04283 * 10 8 4 13 13 C 1.53042 * 109.24379 * 174.54984 * 12 10 8 14 14 C 1.53046 * 109.53336 * 298.51027 * 13 12 10 15 15 C 1.53183 * 109.31506 * 61.36436 * 14 13 12 16 16 N 1.46924 * 109.58651 * 167.09017 * 10 8 4 17 17 C 1.34781 * 120.63064 * 6.63177 * 16 10 8 18 18 O 1.21279 * 119.99956 * 353.17748 * 17 16 10 19 19 C 1.50708 * 119.99885 * 173.18461 * 17 16 10 20 20 S 1.80997 * 109.46936 * 180.02562 * 19 17 16 21 21 C 1.76198 * 100.00004 * 179.97438 * 20 19 17 22 22 H 1.08003 * 119.99755 * 0.02562 * 21 20 19 23 23 C 1.38795 * 120.00162 * 179.97438 * 21 20 19 24 24 N 1.31635 * 119.99902 * 359.72985 * 23 21 20 25 25 Si 1.86801 * 120.00172 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.46985 * 60.00272 * 25 23 21 27 27 H 1.48498 * 109.47255 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.46947 * 300.00208 * 25 23 21 29 29 H 1.08999 * 109.47241 * 270.00676 * 1 2 3 30 30 H 1.09001 * 109.47047 * 30.00232 * 1 2 3 31 31 H 1.08996 * 109.47303 * 150.00404 * 1 2 3 32 32 H 1.08998 * 110.36556 * 85.31384 * 5 4 2 33 33 H 1.08991 * 110.46135 * 323.02832 * 5 4 2 34 34 H 1.09005 * 110.99927 * 204.91101 * 6 5 4 35 35 H 1.09000 * 111.00298 * 81.06943 * 6 5 4 36 36 H 1.08998 * 110.71873 * 277.14298 * 7 6 5 37 37 H 1.08990 * 110.71850 * 153.86528 * 7 6 5 38 38 H 1.08996 * 109.63996 * 54.55755 * 12 10 8 39 39 H 1.09004 * 109.43226 * 294.41353 * 12 10 8 40 40 H 1.08993 * 109.46210 * 178.49164 * 13 12 10 41 41 H 1.09002 * 109.45112 * 58.51783 * 13 12 10 42 42 H 1.08996 * 109.49540 * 301.41006 * 14 13 12 43 43 H 1.09004 * 109.51913 * 181.33123 * 14 13 12 44 44 H 1.08999 * 109.58948 * 185.57443 * 15 14 13 45 45 H 1.09000 * 109.59012 * 65.14939 * 15 14 13 46 46 H 1.08997 * 109.46925 * 59.99648 * 19 17 16 47 47 H 1.09003 * 109.46733 * 299.99801 * 19 17 16 48 48 H 0.96998 * 120.00211 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1671 0.0005 5 6 1.5742 -2.5095 0.0596 6 6 2.6811 -3.4192 0.6488 7 6 3.9554 -2.8230 -0.0054 8 6 3.6427 -1.3125 -0.0573 9 1 4.1016 -0.8096 0.7938 10 6 4.1738 -0.7159 -1.3623 11 1 3.9108 -1.3655 -2.1972 12 6 3.5660 0.6783 -1.5782 13 6 4.2047 1.3216 -2.8112 14 6 5.7095 1.4826 -2.5829 15 6 6.3410 0.1024 -2.3757 16 7 5.6348 -0.5817 -1.2838 17 6 6.3148 -1.0815 -0.2330 18 8 5.7140 -1.5375 0.7167 19 6 7.8219 -1.0734 -0.2380 20 16 8.4342 -1.8068 1.2992 21 6 10.1706 -1.6731 1.0316 22 1 10.5440 -1.2343 0.1180 23 6 11.0586 -2.1305 1.9952 24 7 10.6036 -2.6595 3.1114 25 14 12.8995 -1.9881 1.7118 26 1 13.2644 -0.5592 1.5373 27 1 13.6250 -2.5454 2.8815 28 1 13.2725 -2.7469 0.4911 29 1 -0.3634 0.0001 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3634 -0.8900 -0.5137 32 1 1.2990 -2.8458 -0.9400 33 1 0.7006 -2.5044 0.7114 34 1 2.5358 -4.4566 0.3471 35 1 2.7218 -3.3319 1.7345 36 1 4.0962 -3.2224 -1.0097 37 1 4.8320 -3.0143 0.6134 38 1 3.7563 1.3004 -0.7036 39 1 2.4909 0.5854 -1.7321 40 1 3.7568 2.3003 -2.9834 41 1 4.0353 0.6866 -3.6808 42 1 5.8796 2.0970 -1.6988 43 1 6.1604 1.9623 -3.4517 44 1 7.3930 0.2174 -2.1149 45 1 6.2511 -0.4818 -3.2915 46 1 8.1794 -0.0469 -0.3190 47 1 8.1854 -1.6529 -1.0867 48 1 11.2241 -2.9796 3.7847 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688079739.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:55 Heat of formation + Delta-G solvation = -13.661500 kcal Electronic energy + Delta-G solvation = -29330.759761 eV Core-core repulsion = 25514.124872 eV Total energy + Delta-G solvation = -3816.634889 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.20294 -39.39480 -37.37273 -36.92735 -32.91344 -32.47338 -32.39515 -31.64052 -29.49930 -28.87029 -27.87136 -25.50535 -24.80840 -23.80635 -22.32233 -21.47279 -20.55509 -19.32238 -19.08384 -17.57672 -17.27802 -16.58804 -16.20450 -15.58837 -15.39984 -15.08120 -14.80246 -14.70616 -14.32055 -13.97420 -13.90663 -13.59376 -13.25665 -13.10818 -12.98576 -12.85475 -12.81051 -12.67289 -12.51474 -12.37647 -11.99935 -11.84290 -11.40249 -11.23285 -11.08441 -11.03867 -11.00413 -10.90534 -10.76044 -10.51184 -10.31387 -10.05820 -9.79699 -9.37760 -9.05537 -8.98545 -8.43102 -8.23556 -8.11347 -6.49212 -6.21665 -3.91695 2.59937 2.81851 3.00674 3.12899 3.23514 3.27703 3.31184 3.64978 4.20766 4.45632 4.55015 4.68691 4.83448 4.87995 4.92551 4.98096 5.02869 5.13352 5.13645 5.17677 5.19643 5.25419 5.32343 5.35526 5.47970 5.56210 5.62748 5.62848 5.67231 5.72642 5.80585 5.88251 5.90839 5.97154 6.02811 6.09072 6.11993 6.16587 6.19070 6.24731 6.46073 6.67325 6.80409 6.87282 7.57542 7.59314 7.63396 8.19903 8.35116 8.62514 9.23893 10.85646 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016454 B = 0.003288 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.318897 B = 8514.696398 C = 9626.782766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.510 3.490 3 O -0.529 6.529 4 N -0.615 5.615 5 C 0.100 3.900 6 C -0.135 4.135 7 C -0.127 4.127 8 C 0.135 3.865 9 H 0.120 0.880 10 C 0.144 3.856 11 H 0.060 0.940 12 C -0.125 4.125 13 C -0.125 4.125 14 C -0.135 4.135 15 C 0.111 3.889 16 N -0.610 5.610 17 C 0.527 3.473 18 O -0.504 6.504 19 C -0.151 4.151 20 S -0.059 6.059 21 C -0.535 4.535 22 H 0.071 0.929 23 C 0.074 3.926 24 N -0.868 5.868 25 Si 0.917 3.083 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.058 0.942 37 H 0.126 0.874 38 H 0.100 0.900 39 H 0.073 0.927 40 H 0.060 0.940 41 H 0.053 0.947 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.089 0.911 45 H 0.064 0.936 46 H 0.087 0.913 47 H 0.087 0.913 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.516 2.361 -12.055 23.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.300 3.700 3 O -0.407 6.407 4 N -0.352 5.352 5 C -0.023 4.023 6 C -0.173 4.173 7 C -0.164 4.164 8 C 0.034 3.966 9 H 0.137 0.863 10 C 0.039 3.961 11 H 0.078 0.922 12 C -0.162 4.162 13 C -0.162 4.162 14 C -0.173 4.173 15 C -0.013 4.013 16 N -0.347 5.347 17 C 0.317 3.683 18 O -0.380 6.380 19 C -0.302 4.302 20 S 0.168 5.832 21 C -0.683 4.683 22 H 0.089 0.911 23 C -0.135 4.135 24 N -0.503 5.503 25 Si 0.744 3.256 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.200 1.200 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.144 0.856 38 H 0.118 0.882 39 H 0.091 0.909 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.107 0.893 45 H 0.082 0.918 46 H 0.106 0.894 47 H 0.105 0.895 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -20.070 2.243 -10.474 22.749 hybrid contribution 1.836 0.549 -1.591 2.491 sum -18.233 2.792 -12.065 22.041 Atomic orbital electron populations 1.21902 0.92226 1.04342 1.04451 1.20251 0.89949 0.82787 0.77052 1.90810 1.69374 1.31593 1.48972 1.48898 1.08170 1.05539 1.72547 1.22320 0.96892 0.82688 1.00444 1.22807 0.94758 0.98484 1.01233 1.23239 0.99608 0.92099 1.01451 1.22514 0.77981 0.97737 0.98385 0.86263 1.21826 0.79668 0.97033 0.97528 0.92173 1.22911 0.99098 0.95531 0.98688 1.21666 0.95264 1.00748 0.98559 1.21911 0.96252 0.96889 1.02234 1.21703 0.97046 0.92696 0.89814 1.48049 1.06266 1.58235 1.22103 1.20291 0.89377 0.76702 0.81935 1.90536 1.68216 1.44947 1.34277 1.23590 0.93793 1.05244 1.07537 1.85267 1.03836 1.78114 1.16015 1.22819 0.91148 1.47126 1.07251 0.91066 1.24972 0.99540 0.94550 0.94428 1.70003 1.35361 1.37953 1.07000 0.86246 0.82904 0.78618 0.77874 1.19942 1.20826 1.19961 0.89143 0.89203 0.90621 0.91795 0.90945 0.90309 0.90454 0.92319 0.85644 0.88217 0.90910 0.92140 0.92855 0.91310 0.91131 0.89250 0.91766 0.89435 0.89472 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.30 9.65 36.01 0.35 -0.96 16 2 C 0.51 6.25 6.22 -10.99 -0.07 6.18 16 3 O -0.53 -8.32 12.19 5.56 0.07 -8.25 16 4 N -0.62 -7.42 3.04 -163.01 -0.50 -7.91 16 5 C 0.10 0.89 6.23 -2.52 -0.02 0.88 16 6 C -0.13 -1.42 7.08 -24.58 -0.17 -1.59 16 7 C -0.13 -1.74 5.36 -24.89 -0.13 -1.88 16 8 C 0.14 1.98 2.16 -66.95 -0.14 1.83 16 9 H 0.12 2.24 5.90 -51.59 -0.30 1.94 16 10 C 0.14 1.99 2.68 -67.38 -0.18 1.81 16 11 H 0.06 0.79 7.82 -51.93 -0.41 0.38 16 12 C -0.12 -1.70 3.32 -26.39 -0.09 -1.79 16 13 C -0.12 -1.42 5.88 -26.69 -0.16 -1.58 16 14 C -0.13 -1.50 6.08 -26.61 -0.16 -1.66 16 15 C 0.11 1.34 6.32 -3.71 -0.02 1.32 16 16 N -0.61 -9.06 2.97 -164.96 -0.49 -9.55 16 17 C 0.53 9.64 7.32 -10.98 -0.08 9.56 16 18 O -0.50 -10.15 8.60 5.56 0.05 -10.10 16 19 C -0.15 -3.02 4.59 36.01 0.17 -2.86 16 20 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 21 C -0.54 -15.09 9.50 30.94 0.29 -14.80 16 22 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 23 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 24 N -0.87 -25.91 13.22 55.49 0.73 -25.18 16 25 Si 0.92 21.33 29.55 -169.99 -5.02 16.30 16 26 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 29 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.43 7.29 -51.93 -0.38 0.05 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.51 7.66 -51.93 -0.40 0.11 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.76 7.64 -51.93 -0.40 0.37 16 37 H 0.13 2.17 5.47 -52.69 -0.29 1.88 16 38 H 0.10 1.69 6.22 -51.95 -0.32 1.36 16 39 H 0.07 0.99 5.22 -51.93 -0.27 0.72 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.09 1.09 5.97 -51.93 -0.31 0.78 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.09 1.67 7.42 -51.92 -0.39 1.29 16 47 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 48 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 371.63 15.07 5.60 5.60 Total: -1.00 -32.94 371.63 -9.94 -42.88 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -7.66 Total: 3.50 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -0.52 Total: -3.52 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: -0.25 Total: -42.64 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: 0.12 Total: -18.35 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.94 -9.94 -42.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688079739.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.220 kcal (2) G-P(sol) polarization free energy of solvation -32.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds