Wall clock time and date at job start Sat Apr 11 2020 06:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21277 * 119.99855 * 2 1 4 4 N 1.34764 * 119.99831 * 179.97438 * 2 1 3 5 5 C 1.47429 * 125.64983 * 357.20026 * 4 2 1 6 6 C 1.54917 * 104.82774 * 204.14664 * 5 4 2 7 7 C 1.55154 * 101.58659 * 322.98749 * 6 5 4 8 8 C 1.47024 * 125.64667 * 177.22193 * 4 2 1 9 9 H 1.08996 * 110.01403 * 59.43386 * 8 4 2 10 10 C 1.53000 * 109.88322 * 298.33511 * 8 4 2 11 11 H 1.09001 * 109.70542 * 287.45039 * 10 8 4 12 12 C 1.53625 * 109.66064 * 48.04283 * 10 8 4 13 13 C 1.53042 * 109.24379 * 174.54984 * 12 10 8 14 14 C 1.53046 * 109.53336 * 298.51027 * 13 12 10 15 15 C 1.53183 * 109.31506 * 61.36436 * 14 13 12 16 16 N 1.46924 * 109.58651 * 167.09017 * 10 8 4 17 17 C 1.34781 * 120.63064 * 6.63177 * 16 10 8 18 18 O 1.21279 * 119.99956 * 353.17748 * 17 16 10 19 19 C 1.50708 * 119.99885 * 173.18461 * 17 16 10 20 20 S 1.80997 * 109.46936 * 180.02562 * 19 17 16 21 21 C 1.76198 * 100.00004 * 179.97438 * 20 19 17 22 22 H 1.08003 * 119.99755 * 0.02562 * 21 20 19 23 23 C 1.38795 * 120.00162 * 179.97438 * 21 20 19 24 24 N 1.31635 * 119.99902 * 359.72985 * 23 21 20 25 25 Si 1.86801 * 120.00172 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.46985 * 60.00272 * 25 23 21 27 27 H 1.48498 * 109.47255 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.46947 * 300.00208 * 25 23 21 29 29 H 1.08999 * 109.47241 * 270.00676 * 1 2 3 30 30 H 1.09001 * 109.47047 * 30.00232 * 1 2 3 31 31 H 1.08996 * 109.47303 * 150.00404 * 1 2 3 32 32 H 1.08998 * 110.36556 * 85.31384 * 5 4 2 33 33 H 1.08991 * 110.46135 * 323.02832 * 5 4 2 34 34 H 1.09005 * 110.99927 * 204.91101 * 6 5 4 35 35 H 1.09000 * 111.00298 * 81.06943 * 6 5 4 36 36 H 1.08998 * 110.71873 * 277.14298 * 7 6 5 37 37 H 1.08990 * 110.71850 * 153.86528 * 7 6 5 38 38 H 1.08996 * 109.63996 * 54.55755 * 12 10 8 39 39 H 1.09004 * 109.43226 * 294.41353 * 12 10 8 40 40 H 1.08993 * 109.46210 * 178.49164 * 13 12 10 41 41 H 1.09002 * 109.45112 * 58.51783 * 13 12 10 42 42 H 1.08996 * 109.49540 * 301.41006 * 14 13 12 43 43 H 1.09004 * 109.51913 * 181.33123 * 14 13 12 44 44 H 1.08999 * 109.58948 * 185.57443 * 15 14 13 45 45 H 1.09000 * 109.59012 * 65.14939 * 15 14 13 46 46 H 1.08997 * 109.46925 * 59.99648 * 19 17 16 47 47 H 1.09003 * 109.46733 * 299.99801 * 19 17 16 48 48 H 0.96998 * 120.00211 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1671 0.0005 5 6 1.5742 -2.5095 0.0596 6 6 2.6811 -3.4192 0.6488 7 6 3.9554 -2.8230 -0.0054 8 6 3.6427 -1.3125 -0.0573 9 1 4.1016 -0.8096 0.7938 10 6 4.1738 -0.7159 -1.3623 11 1 3.9108 -1.3655 -2.1972 12 6 3.5660 0.6783 -1.5782 13 6 4.2047 1.3216 -2.8112 14 6 5.7095 1.4826 -2.5829 15 6 6.3410 0.1024 -2.3757 16 7 5.6348 -0.5817 -1.2838 17 6 6.3148 -1.0815 -0.2330 18 8 5.7140 -1.5375 0.7167 19 6 7.8219 -1.0734 -0.2380 20 16 8.4342 -1.8068 1.2992 21 6 10.1706 -1.6731 1.0316 22 1 10.5440 -1.2343 0.1180 23 6 11.0586 -2.1305 1.9952 24 7 10.6036 -2.6595 3.1114 25 14 12.8995 -1.9881 1.7118 26 1 13.2644 -0.5592 1.5373 27 1 13.6250 -2.5454 2.8815 28 1 13.2725 -2.7469 0.4911 29 1 -0.3634 0.0001 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3634 -0.8900 -0.5137 32 1 1.2990 -2.8458 -0.9400 33 1 0.7006 -2.5044 0.7114 34 1 2.5358 -4.4566 0.3471 35 1 2.7218 -3.3319 1.7345 36 1 4.0962 -3.2224 -1.0097 37 1 4.8320 -3.0143 0.6134 38 1 3.7563 1.3004 -0.7036 39 1 2.4909 0.5854 -1.7321 40 1 3.7568 2.3003 -2.9834 41 1 4.0353 0.6866 -3.6808 42 1 5.8796 2.0970 -1.6988 43 1 6.1604 1.9623 -3.4517 44 1 7.3930 0.2174 -2.1149 45 1 6.2511 -0.4818 -3.2915 46 1 8.1794 -0.0469 -0.3190 47 1 8.1854 -1.6529 -1.0867 48 1 11.2241 -2.9796 3.7847 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688079739.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:55 Heat of formation + Delta-G solvation = -34.376012 kcal Electronic energy + Delta-G solvation = -29331.658010 eV Core-core repulsion = 25514.124872 eV Total energy + Delta-G solvation = -3817.533138 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.33229 -40.54633 -38.40056 -38.11422 -34.58701 -34.09978 -33.46723 -32.61309 -30.63256 -29.95185 -28.90954 -27.65544 -25.91661 -24.77963 -23.32794 -22.56701 -21.60013 -20.62171 -20.16846 -19.47596 -18.29783 -17.67982 -17.29454 -16.88808 -16.83671 -16.70929 -16.15450 -15.78133 -15.72175 -15.32797 -14.92359 -14.74437 -14.53830 -14.21892 -14.14891 -14.07339 -13.90337 -13.70507 -13.54880 -13.32335 -13.16133 -13.03569 -12.88037 -12.79080 -12.63022 -12.37797 -12.23383 -12.01342 -11.86292 -11.72830 -11.53255 -11.33161 -11.18302 -11.11096 -10.38281 -10.26596 -10.26032 -9.60092 -9.24069 -8.64553 -8.34741 -6.11606 1.25498 1.42669 1.44668 1.54116 1.57287 1.68565 1.94507 2.26642 2.33510 2.99218 3.25840 3.53737 3.57820 3.71757 3.86904 3.91649 3.98561 4.04258 4.13527 4.22513 4.23713 4.26763 4.28647 4.45663 4.50590 4.54065 4.57238 4.64207 4.68015 4.71130 4.80398 4.89338 4.89872 5.00913 5.06090 5.08383 5.12197 5.17833 5.22480 5.26356 5.41080 5.41267 5.54099 5.64656 5.71757 6.19142 6.34345 6.68388 7.06651 7.20920 7.29106 8.73990 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016454 B = 0.003288 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.318897 B = 8514.696398 C = 9626.782766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.499 3.501 3 O -0.574 6.574 4 N -0.617 5.617 5 C 0.102 3.898 6 C -0.131 4.131 7 C -0.124 4.124 8 C 0.139 3.861 9 H 0.066 0.934 10 C 0.146 3.854 11 H 0.081 0.919 12 C -0.113 4.113 13 C -0.121 4.121 14 C -0.130 4.130 15 C 0.103 3.897 16 N -0.603 5.603 17 C 0.521 3.479 18 O -0.528 6.528 19 C -0.125 4.125 20 S -0.138 6.138 21 C -0.549 4.549 22 H 0.079 0.921 23 C 0.016 3.984 24 N -0.910 5.910 25 Si 0.995 3.005 26 H -0.264 1.264 27 H -0.278 1.278 28 H -0.261 1.261 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.060 0.940 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.045 0.955 43 H 0.100 0.900 44 H 0.087 0.913 45 H 0.092 0.908 46 H 0.096 0.904 47 H 0.103 0.897 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.691 2.148 -15.131 25.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.291 3.709 3 O -0.455 6.455 4 N -0.353 5.353 5 C -0.020 4.020 6 C -0.169 4.169 7 C -0.161 4.161 8 C 0.036 3.964 9 H 0.084 0.916 10 C 0.042 3.958 11 H 0.098 0.902 12 C -0.150 4.150 13 C -0.158 4.158 14 C -0.168 4.168 15 C -0.019 4.019 16 N -0.338 5.338 17 C 0.309 3.691 18 O -0.406 6.406 19 C -0.276 4.276 20 S 0.089 5.911 21 C -0.697 4.697 22 H 0.097 0.903 23 C -0.189 4.189 24 N -0.546 5.546 25 Si 0.817 3.183 26 H -0.189 1.189 27 H -0.203 1.203 28 H -0.186 1.186 29 H 0.121 0.879 30 H 0.114 0.886 31 H 0.123 0.877 32 H 0.110 0.890 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.102 0.898 38 H 0.078 0.922 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.064 0.936 43 H 0.118 0.882 44 H 0.106 0.894 45 H 0.110 0.890 46 H 0.114 0.886 47 H 0.121 0.879 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -21.283 2.027 -13.580 25.328 hybrid contribution 2.098 0.653 -0.636 2.287 sum -19.185 2.680 -14.216 24.028 Atomic orbital electron populations 1.21901 0.88079 1.06068 1.05736 1.21201 0.91857 0.82045 0.75819 1.90819 1.70666 1.33115 1.50941 1.48992 1.07047 1.07047 1.72184 1.22538 0.96672 0.80252 1.02501 1.22807 0.93694 1.00239 1.00136 1.23013 0.99648 0.92082 1.01407 1.22094 0.79816 0.97628 0.96877 0.91578 1.21902 0.78717 0.97556 0.97607 0.90153 1.22684 0.99418 0.94696 0.98244 1.21653 0.95024 1.01228 0.97944 1.21891 0.96379 0.96025 1.02490 1.22000 0.96758 0.93441 0.89739 1.48046 1.06895 1.57217 1.21631 1.20053 0.88664 0.77532 0.82822 1.90610 1.68363 1.46092 1.35501 1.23400 0.95223 1.05061 1.03883 1.85400 1.04718 1.79495 1.21485 1.23169 0.91559 1.47197 1.07727 0.90257 1.26077 1.05103 0.93829 0.93920 1.70166 1.37281 1.39064 1.08123 0.85051 0.75936 0.79103 0.78212 1.18894 1.20320 1.18572 0.87903 0.88639 0.87739 0.89000 0.88212 0.87791 0.92124 0.91235 0.89814 0.92184 0.90691 0.91632 0.90731 0.93585 0.88168 0.89421 0.88956 0.88590 0.87876 0.92007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 9.65 71.24 0.69 -1.32 16 2 C 0.50 11.87 6.22 87.66 0.54 12.41 16 3 O -0.57 -18.64 12.19 -3.02 -0.04 -18.67 16 4 N -0.62 -14.39 3.04 -788.04 -2.40 -16.79 16 5 C 0.10 1.55 6.23 86.86 0.54 2.09 16 6 C -0.13 -2.63 7.08 31.99 0.23 -2.41 16 7 C -0.12 -3.49 5.36 31.78 0.17 -3.32 16 8 C 0.14 4.19 2.16 45.34 0.10 4.29 16 9 H 0.07 2.73 5.90 -6.77 -0.04 2.69 16 10 C 0.15 3.98 2.68 45.12 0.12 4.10 16 11 H 0.08 1.91 7.82 -2.39 -0.02 1.89 16 12 C -0.11 -3.04 3.32 30.82 0.10 -2.93 16 13 C -0.12 -2.51 5.88 30.62 0.18 -2.33 16 14 C -0.13 -2.67 6.08 30.67 0.19 -2.48 16 15 C 0.10 2.30 6.32 86.36 0.55 2.85 16 16 N -0.60 -17.87 2.97 -794.21 -2.36 -20.22 16 17 C 0.52 19.83 7.32 87.66 0.64 20.47 16 18 O -0.53 -22.94 8.60 -3.03 -0.03 -22.97 16 19 C -0.12 -5.11 4.59 71.24 0.33 -4.78 16 20 S -0.14 -7.65 20.57 -56.49 -1.16 -8.82 16 21 C -0.55 -31.55 9.50 67.95 0.65 -30.91 16 22 H 0.08 4.26 7.80 -2.91 -0.02 4.24 16 23 C 0.02 0.89 5.49 84.86 0.47 1.36 16 24 N -0.91 -55.94 13.22 21.65 0.29 -55.65 16 25 Si 1.00 43.86 29.55 68.60 2.03 45.88 16 26 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 27 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 28 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 29 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.10 0.73 7.29 -2.39 -0.02 0.71 16 32 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.10 1.02 7.66 -2.39 -0.02 1.00 16 34 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 35 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.07 1.76 7.64 -2.39 -0.02 1.74 16 37 H 0.08 3.14 5.47 -24.14 -0.13 3.01 16 38 H 0.06 2.14 6.22 -2.72 -0.02 2.13 16 39 H 0.07 1.99 5.22 -2.39 -0.01 1.97 16 40 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 44 H 0.09 2.00 5.97 -2.39 -0.01 1.99 16 45 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.10 3.74 7.42 -2.40 -0.02 3.72 16 47 H 0.10 3.86 8.14 -2.39 -0.02 3.84 16 48 H 0.27 15.51 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -78.07 371.63 2.63 -75.44 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: 0.81 Total: 24.71 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: 5.48 Total: -2.91 kcal Atomic # 7 Polarization: -88.20 SS G_CDS: -4.47 Total: -92.67 kcal Atomic # 8 Polarization: -41.58 SS G_CDS: -0.06 Total: -41.64 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: -7.65 SS G_CDS: -1.16 Total: -8.82 kcal Total: -78.07 2.63 -75.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688079739.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.064 kcal (2) G-P(sol) polarization free energy of solvation -78.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds