Wall clock time and date at job start Sat Apr 11 2020 06:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08993 * 109.47253 * 2 1 4 4 C 1.53006 * 109.46701 * 239.99457 * 2 1 3 5 5 N 1.46502 * 109.46762 * 185.00218 * 4 2 1 6 6 C 1.34777 * 119.99762 * 180.02562 * 5 4 2 7 7 O 1.21284 * 120.00027 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.99905 * 180.02562 * 6 5 4 9 9 S 1.81003 * 109.47111 * 179.97438 * 8 6 5 10 10 C 1.76202 * 99.99898 * 179.97438 * 9 8 6 11 11 H 1.08003 * 119.99997 * 0.02562 * 10 9 8 12 12 C 1.38801 * 119.99543 * 180.02562 * 10 9 8 13 13 N 1.31626 * 120.00520 * 359.97438 * 12 10 9 14 14 Si 1.86809 * 119.99511 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.46983 * 89.99902 * 14 12 10 16 16 H 1.48494 * 109.46908 * 209.99906 * 14 12 10 17 17 H 1.48496 * 109.47201 * 330.00019 * 14 12 10 18 18 N 1.46501 * 109.46819 * 120.00320 * 2 1 3 19 19 C 1.34776 * 119.99253 * 274.99469 * 18 2 1 20 20 O 1.21275 * 120.00685 * 0.02562 * 19 18 2 21 21 C 1.50702 * 119.99707 * 180.02562 * 19 18 2 22 22 C 1.52994 * 109.47423 * 180.02562 * 21 19 18 23 23 H 1.09006 * 109.24396 * 305.34364 * 22 21 19 24 24 C 1.50061 * 109.36218 * 64.99716 * 22 21 19 25 25 C 1.29446 * 124.07943 * 137.33739 * 24 22 21 26 26 C 1.50068 * 124.07249 * 359.55889 * 25 24 22 27 27 C 1.53025 * 110.03748 * 17.17672 * 26 25 24 28 28 C 1.53022 * 109.36289 * 185.69261 * 22 21 19 29 29 H 1.08993 * 109.47253 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46485 * 300.00708 * 1 2 3 31 31 H 1.09000 * 109.47136 * 59.99679 * 1 2 3 32 32 H 1.08990 * 109.47298 * 305.00429 * 4 2 1 33 33 H 1.08998 * 109.46555 * 65.00499 * 4 2 1 34 34 H 0.96995 * 119.99991 * 0.02562 * 5 4 2 35 35 H 1.09004 * 109.46899 * 299.99636 * 8 6 5 36 36 H 1.09000 * 109.47373 * 59.99634 * 8 6 5 37 37 H 0.96996 * 120.00166 * 180.02562 * 13 12 10 38 38 H 0.96994 * 120.00647 * 94.99688 * 18 2 1 39 39 H 1.09005 * 109.47103 * 59.99650 * 21 19 18 40 40 H 1.08998 * 109.47298 * 300.00101 * 21 19 18 41 41 H 1.08004 * 117.96549 * 317.32530 * 24 22 21 42 42 H 1.08000 * 117.96595 * 179.54089 * 25 24 22 43 43 H 1.09002 * 109.35724 * 137.31638 * 26 25 24 44 44 H 1.08998 * 109.35998 * 257.04279 * 26 25 24 45 45 H 1.09002 * 109.64265 * 70.17614 * 27 26 25 46 46 H 1.08994 * 109.64420 * 190.81142 * 27 26 25 47 47 H 1.09004 * 109.63779 * 310.04170 * 28 22 21 48 48 H 1.08997 * 109.64468 * 70.45670 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2493 5 7 3.5000 -0.8266 -1.1906 6 6 4.1730 -1.4286 -2.1911 7 8 3.5699 -1.8837 -3.1399 8 6 5.6748 -1.5373 -2.1305 9 16 6.2781 -2.3906 -3.6084 10 6 8.0099 -2.3777 -3.2836 11 1 8.3861 -1.9252 -2.3780 12 6 8.8905 -2.9492 -4.1917 13 7 8.4320 -3.5011 -5.2951 14 14 10.7265 -2.9361 -3.8470 15 1 11.0975 -4.1614 -3.0944 16 1 11.4709 -2.8996 -5.1313 17 1 11.0704 -1.7371 -3.0412 18 7 2.0183 -0.6907 1.1962 19 6 2.1471 -0.0182 2.3571 20 8 1.8583 1.1584 2.4117 21 6 2.6499 -0.7285 3.5874 22 6 2.7007 0.2544 4.7588 23 1 3.2973 1.1214 4.4747 24 6 1.3076 0.6983 5.0965 25 6 0.8561 0.8147 6.3041 26 6 1.6599 0.5128 7.5349 27 6 3.1505 0.4740 7.1913 28 6 3.3435 -0.4295 5.9674 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5140 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6053 -1.7198 -1.2951 33 1 1.7516 -0.1584 -2.1369 34 1 3.9823 -0.4630 -0.4316 35 1 6.1098 -0.5389 -2.0840 36 1 5.9629 -2.1008 -1.2430 37 1 9.0473 -3.9008 -5.9295 38 1 2.2490 -1.6318 1.1527 39 1 3.6492 -1.1204 3.3979 40 1 1.9776 -1.5508 3.8325 41 1 0.6401 0.9358 4.2814 42 1 -0.1622 1.1502 6.4340 43 1 1.4812 1.2863 8.2818 44 1 1.3565 -0.4541 7.9364 45 1 3.5005 1.4810 6.9641 46 1 3.7105 0.0697 8.0345 47 1 2.8639 -1.3927 6.1413 48 1 4.4072 -0.5781 5.7815 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688123953.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:02 Heat of formation + Delta-G solvation = -85.517873 kcal Electronic energy + Delta-G solvation = -26434.737725 eV Core-core repulsion = 22614.986909 eV Total energy + Delta-G solvation = -3819.750815 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.52750 -39.30554 -38.55543 -36.48567 -33.71530 -33.10843 -32.45227 -31.38193 -31.31295 -29.42761 -27.56029 -26.02579 -25.39724 -23.15237 -22.54787 -21.45060 -20.63621 -20.38234 -18.26667 -17.97789 -17.39252 -16.84472 -16.33407 -16.29200 -15.79276 -15.49808 -15.09849 -14.82543 -14.64311 -14.44361 -14.10977 -13.81133 -13.53206 -13.34023 -13.11579 -13.01876 -12.95949 -12.81287 -12.67622 -12.56640 -12.42798 -12.20361 -11.85739 -11.82996 -11.30286 -11.22928 -11.08336 -11.04864 -10.89870 -10.78271 -10.47381 -9.95594 -9.84500 -9.52715 -9.39733 -9.25127 -9.09808 -8.98743 -8.26986 -6.53016 -6.24049 -3.94912 2.06334 2.36640 2.79510 2.99686 3.04455 3.20613 3.26289 3.30291 3.66842 4.18061 4.24521 4.34891 4.36688 4.43738 4.60641 4.77369 4.82571 4.91205 4.95818 5.04812 5.07859 5.10787 5.11224 5.21767 5.29842 5.32109 5.33105 5.38820 5.41508 5.50277 5.55937 5.60129 5.66043 5.73260 5.73427 5.84376 5.88697 5.97062 6.00945 6.09724 6.16462 6.44832 6.50832 6.70534 7.17773 7.57118 7.61504 7.93882 8.32804 8.53645 9.21343 10.83328 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012779 B = 0.002041 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.520400 B =13718.576954 C =15665.489946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.131 3.869 3 H 0.095 0.905 4 C 0.113 3.887 5 N -0.739 5.739 6 C 0.532 3.468 7 O -0.516 6.516 8 C -0.154 4.154 9 S -0.060 6.060 10 C -0.536 4.536 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 N -0.729 5.729 19 C 0.514 3.486 20 O -0.535 6.535 21 C -0.136 4.136 22 C -0.043 4.043 23 H 0.088 0.912 24 C -0.135 4.135 25 C -0.169 4.169 26 C -0.090 4.090 27 C -0.120 4.120 28 C -0.117 4.117 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.399 0.601 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.269 0.731 38 H 0.403 0.597 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.109 0.891 42 H 0.099 0.901 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.066 0.934 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.396 6.701 24.175 29.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.026 3.974 3 H 0.113 0.887 4 C -0.012 4.012 5 N -0.395 5.395 6 C 0.318 3.682 7 O -0.390 6.390 8 C -0.304 4.304 9 S 0.167 5.833 10 C -0.684 4.684 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.502 5.502 14 Si 0.745 3.255 15 H -0.203 1.203 16 H -0.207 1.207 17 H -0.197 1.197 18 N -0.382 5.382 19 C 0.301 3.699 20 O -0.412 6.412 21 C -0.176 4.176 22 C -0.062 4.062 23 H 0.106 0.894 24 C -0.153 4.153 25 C -0.187 4.187 26 C -0.127 4.127 27 C -0.158 4.158 28 C -0.155 4.155 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.233 0.767 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.078 0.922 38 H 0.238 0.762 39 H 0.117 0.883 40 H 0.113 0.887 41 H 0.127 0.873 42 H 0.117 0.883 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.084 0.916 46 H 0.083 0.917 47 H 0.084 0.916 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.587 6.705 22.430 28.691 hybrid contribution 2.075 0.254 1.527 2.589 sum -14.513 6.958 23.957 28.861 Atomic orbital electron populations 1.22096 0.94126 1.02624 1.03020 1.21232 0.94890 0.97850 0.83404 0.88685 1.21611 0.81148 1.01295 0.97111 1.45993 1.06787 1.62077 1.24626 1.20328 0.89536 0.76727 0.81603 1.90712 1.69863 1.45986 1.32453 1.23530 0.93480 1.05715 1.07694 1.85400 1.04650 1.72987 1.20262 1.22863 0.91502 1.44387 1.09661 0.90927 1.24996 0.99611 0.94548 0.94437 1.70011 1.35451 1.35409 1.09375 0.86166 0.82817 0.78614 0.77898 1.20258 1.20739 1.19692 1.46203 1.67892 1.14402 1.09719 1.20736 0.77242 0.87409 0.84481 1.90709 1.49616 1.15996 1.84865 1.21749 1.03456 0.99681 0.92724 1.19836 0.95232 0.97754 0.93329 0.89370 1.22150 0.96805 0.99215 0.97109 1.22031 0.99796 1.02518 0.94346 1.20445 0.94502 1.01559 0.96217 1.21584 0.96080 1.00323 0.97794 1.21672 1.00653 0.98821 0.94306 0.92051 0.91685 0.91118 0.90937 0.90026 0.76739 0.89231 0.89257 0.92160 0.76213 0.88348 0.88717 0.87292 0.88276 0.91373 0.91149 0.91643 0.91661 0.91553 0.91380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.20 9.48 37.16 0.35 -0.85 16 2 C 0.13 1.10 2.73 -67.92 -0.19 0.91 16 3 H 0.10 0.94 7.58 -51.93 -0.39 0.54 16 4 C 0.11 1.16 5.23 -4.04 -0.02 1.14 16 5 N -0.74 -9.08 5.39 -60.29 -0.32 -9.40 16 6 C 0.53 9.45 7.85 -10.99 -0.09 9.36 16 7 O -0.52 -11.29 15.86 5.55 0.09 -11.20 16 8 C -0.15 -3.00 6.16 36.00 0.22 -2.78 16 9 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 10 C -0.54 -15.08 9.50 30.94 0.29 -14.79 16 11 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 12 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 13 N -0.87 -25.92 13.22 55.49 0.73 -25.19 16 14 Si 0.92 21.21 29.55 -169.99 -5.02 16.18 16 15 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 18 N -0.73 -5.36 4.52 -53.80 -0.24 -5.61 16 19 C 0.51 4.46 7.43 -10.98 -0.08 4.38 16 20 O -0.54 -6.50 13.95 5.56 0.08 -6.42 16 21 C -0.14 -0.86 5.13 -27.88 -0.14 -1.00 16 22 C -0.04 -0.32 2.11 -92.07 -0.19 -0.52 16 23 H 0.09 0.80 7.94 -51.93 -0.41 0.39 16 24 C -0.13 -1.16 8.42 -35.90 -0.30 -1.47 16 25 C -0.17 -1.31 9.80 -35.90 -0.35 -1.66 16 26 C -0.09 -0.57 6.12 -28.18 -0.17 -0.74 16 27 C -0.12 -0.74 6.00 -26.54 -0.16 -0.90 16 28 C -0.12 -0.71 5.31 -26.54 -0.14 -0.85 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.40 4.07 8.14 -40.82 -0.33 3.73 16 35 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 36 H 0.09 1.59 8.14 -51.92 -0.42 1.16 16 37 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.40 2.38 8.60 -40.82 -0.35 2.03 16 39 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.11 1.11 6.54 -52.48 -0.34 0.77 16 42 H 0.10 0.71 8.06 -52.49 -0.42 0.29 16 43 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.06 0.44 8.12 -51.93 -0.42 0.02 16 46 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.07 0.38 8.10 -51.93 -0.42 -0.04 16 48 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 406.18 15.07 6.12 6.12 Total: -1.00 -35.01 406.18 -9.99 -44.99 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -8.14 Total: 2.11 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: -1.07 Total: -7.79 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 0.17 Total: -40.20 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: 0.17 Total: -17.62 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -35.01 -9.99 -44.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688123953.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.525 kcal (2) G-P(sol) polarization free energy of solvation -35.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds