Wall clock time and date at job start Sat Apr 11 2020 06:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47006 * 2 1 4 4 C 1.52998 * 109.47362 * 119.99835 * 2 1 3 5 5 N 1.46493 * 109.47333 * 175.00255 * 4 2 1 6 6 C 1.34772 * 120.00312 * 179.72772 * 5 4 2 7 7 O 1.21280 * 119.99855 * 0.27554 * 6 5 4 8 8 C 1.50702 * 120.00379 * 180.27574 * 6 5 4 9 9 S 1.81003 * 109.47346 * 180.02562 * 8 6 5 10 10 C 1.76191 * 99.99973 * 180.02562 * 9 8 6 11 11 H 1.08007 * 120.00466 * 359.97438 * 10 9 8 12 12 C 1.38802 * 120.00111 * 179.97438 * 10 9 8 13 13 N 1.31631 * 119.99916 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00358 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46885 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.47248 * 119.99906 * 14 12 10 17 17 H 1.48494 * 109.47541 * 240.00212 * 14 12 10 18 18 N 1.46501 * 109.47286 * 240.00486 * 2 1 3 19 19 C 1.34774 * 120.00258 * 84.99884 * 18 2 1 20 20 O 1.21619 * 119.99605 * 359.97438 * 19 18 2 21 21 C 1.47101 * 120.00032 * 180.02562 * 19 18 2 22 22 C 1.32995 * 119.99810 * 186.98406 * 21 19 18 23 23 C 1.51267 * 120.84995 * 12.16933 * 22 21 19 24 24 C 1.53665 * 108.31174 * 128.61849 * 23 22 21 25 25 C 1.52967 * 109.32198 * 54.85892 * 24 23 22 26 26 C 1.52954 * 109.81732 * 296.27277 * 25 24 23 27 27 C 1.51268 * 120.84845 * 192.44917 * 22 21 19 28 28 H 1.09009 * 109.47022 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47582 * 299.99763 * 1 2 3 30 30 H 1.08999 * 109.47375 * 60.00193 * 1 2 3 31 31 H 1.09003 * 109.46721 * 55.00550 * 4 2 1 32 32 H 1.09004 * 109.47311 * 295.00652 * 4 2 1 33 33 H 0.97003 * 120.00091 * 359.97438 * 5 4 2 34 34 H 1.09005 * 109.46804 * 299.99826 * 8 6 5 35 35 H 1.08997 * 109.46822 * 59.99843 * 8 6 5 36 36 H 0.96993 * 120.00223 * 180.02562 * 13 12 10 37 37 H 0.97003 * 119.99750 * 264.99516 * 18 2 1 38 38 H 1.07997 * 119.99853 * 6.98090 * 21 19 18 39 39 H 1.09000 * 109.62602 * 248.38981 * 23 22 21 40 40 H 1.09001 * 109.63135 * 8.95810 * 23 22 21 41 41 H 1.09000 * 109.62753 * 294.84541 * 24 23 22 42 42 H 1.08994 * 109.41881 * 174.74957 * 24 23 22 43 43 H 1.08995 * 109.41041 * 176.16613 * 25 24 23 44 44 H 1.08998 * 109.40850 * 56.38053 * 25 24 23 45 45 H 1.09000 * 109.48618 * 303.61895 * 26 25 24 46 46 H 1.09002 * 109.48608 * 183.57684 * 26 25 24 47 47 H 1.08992 * 109.62693 * 351.04187 * 27 22 21 48 48 H 1.09008 * 109.62336 * 111.60938 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5000 -0.8263 1.1906 6 6 4.1735 -1.4237 2.1935 7 8 3.5704 -1.8787 3.1423 8 6 5.6759 -1.5262 2.1361 9 16 6.2798 -2.3744 3.6168 10 6 8.0121 -2.3548 3.2955 11 1 8.3883 -1.9023 2.3898 12 6 8.8933 -2.9210 4.2062 13 7 8.4348 -3.4729 5.3098 14 14 10.7298 -2.9009 3.8653 15 1 10.9848 -2.2269 2.5668 16 1 11.4266 -2.1642 4.9501 17 1 11.2380 -4.2950 3.8081 18 7 2.0183 -0.6905 -1.1962 19 6 2.1471 -0.0181 -2.3571 20 8 1.8573 1.1618 -2.4118 21 6 2.6369 -0.7116 -3.5584 22 6 2.8962 -0.0216 -4.6653 23 6 2.9601 1.4895 -4.6403 24 6 4.2796 1.9278 -5.2946 25 6 4.3786 1.3164 -6.6932 26 6 4.4363 -0.2085 -6.5896 27 6 3.1285 -0.7275 -5.9829 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6054 -1.7198 1.2951 32 1 1.7516 -0.1583 2.1370 33 1 3.9823 -0.4627 0.4316 34 1 5.9680 -2.0902 1.2502 35 1 6.1068 -0.5262 2.0887 36 1 9.0506 -3.8682 5.9464 37 1 2.2491 -1.6317 -1.1527 38 1 2.7860 -1.7811 -3.5413 39 1 2.1179 1.9009 -5.1967 40 1 2.9274 1.8404 -3.6088 41 1 5.1194 1.5875 -4.6888 42 1 4.3029 3.0149 -5.3706 43 1 5.2807 1.6806 -7.1848 44 1 3.5060 1.6071 -7.2782 45 1 5.2724 -0.4983 -5.9532 46 1 4.5706 -0.6356 -7.5835 47 1 3.2039 -1.8016 -5.8144 48 1 2.3015 -0.5177 -6.6614 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688124223.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:08 Heat of formation + Delta-G solvation = -79.352476 kcal Electronic energy + Delta-G solvation = -26568.062763 eV Core-core repulsion = 22748.579299 eV Total energy + Delta-G solvation = -3819.483464 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.46769 -39.25815 -38.36347 -36.45740 -33.69326 -33.08597 -32.44202 -31.40329 -31.29897 -29.39987 -27.20298 -25.99283 -25.38317 -23.34161 -22.77758 -21.23594 -20.70890 -20.36203 -19.01408 -17.87507 -17.30492 -16.72064 -16.27670 -15.82982 -15.69829 -15.19229 -14.90337 -14.81702 -14.71293 -14.64789 -14.06165 -13.90128 -13.69974 -13.48018 -13.14185 -13.04010 -12.92094 -12.78184 -12.73257 -12.51877 -12.28974 -12.10588 -11.80845 -11.46723 -11.28557 -11.25730 -11.08184 -11.04742 -11.03348 -10.76719 -10.66539 -9.82559 -9.77068 -9.46520 -9.30884 -9.20069 -9.09406 -8.96039 -8.25186 -6.51736 -6.23234 -3.93785 1.04869 2.86312 3.00330 3.03585 3.07642 3.20616 3.27448 3.32088 3.69218 4.18953 4.26452 4.33223 4.40403 4.54189 4.61348 4.77516 4.84460 4.90031 4.98899 5.02710 5.04136 5.12109 5.12966 5.20514 5.27107 5.34622 5.41329 5.47644 5.51848 5.57129 5.61760 5.67436 5.70290 5.72735 5.76150 5.86464 5.89431 5.92661 5.98983 6.11854 6.18186 6.25084 6.41183 6.53934 7.26756 7.58551 7.64100 8.01343 8.34098 8.55979 9.22341 10.84257 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009957 B = 0.002334 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2811.374253 B =11995.649202 C =14290.150879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.132 3.868 3 H 0.096 0.904 4 C 0.113 3.887 5 N -0.739 5.739 6 C 0.532 3.468 7 O -0.517 6.517 8 C -0.153 4.153 9 S -0.060 6.060 10 C -0.535 4.535 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.280 1.280 18 N -0.723 5.723 19 C 0.551 3.449 20 O -0.539 6.539 21 C -0.238 4.238 22 C -0.014 4.014 23 C -0.122 4.122 24 C -0.118 4.118 25 C -0.124 4.124 26 C -0.118 4.118 27 C -0.095 4.095 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.399 0.601 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.268 0.732 37 H 0.403 0.597 38 H 0.127 0.873 39 H 0.075 0.925 40 H 0.122 0.878 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.066 0.934 46 H 0.066 0.934 47 H 0.074 0.926 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.814 7.857 -24.314 29.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.027 3.973 3 H 0.114 0.886 4 C -0.012 4.012 5 N -0.395 5.395 6 C 0.318 3.682 7 O -0.391 6.391 8 C -0.304 4.304 9 S 0.167 5.833 10 C -0.683 4.683 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.206 1.206 18 N -0.375 5.375 19 C 0.342 3.658 20 O -0.419 6.419 21 C -0.259 4.259 22 C -0.016 4.016 23 C -0.158 4.158 24 C -0.156 4.156 25 C -0.161 4.161 26 C -0.156 4.156 27 C -0.132 4.132 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.233 0.767 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.238 0.762 38 H 0.145 0.855 39 H 0.093 0.907 40 H 0.139 0.861 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.085 0.915 46 H 0.085 0.915 47 H 0.093 0.907 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -14.997 7.828 -22.558 28.197 hybrid contribution 2.211 0.055 -1.655 2.762 sum -12.787 7.883 -24.213 28.494 Atomic orbital electron populations 1.22100 0.94095 1.02645 1.03036 1.21232 0.94918 0.97840 0.83335 0.88646 1.21613 0.81149 1.01307 0.97099 1.45996 1.06782 1.62203 1.24486 1.20320 0.89534 0.76733 0.81595 1.90709 1.69894 1.45917 1.32537 1.23530 0.93498 1.05703 1.07673 1.85393 1.04593 1.73258 1.20101 1.22903 0.91448 1.44375 1.09565 0.90889 1.24999 0.99623 0.94545 0.94461 1.70024 1.35310 1.35641 1.09307 0.86112 0.82961 0.77983 0.78412 1.19611 1.20558 1.20564 1.46068 1.67545 1.14400 1.09489 1.18581 0.77544 0.86388 0.83281 1.90625 1.50756 1.15745 1.84793 1.22286 1.09706 1.00405 0.93484 1.22748 0.88492 0.96720 0.93667 1.21694 0.97230 0.91029 1.05828 1.21687 0.97665 1.00389 0.95832 1.21569 1.01932 0.95215 0.97423 1.21581 0.97094 0.95961 1.00930 1.20993 0.98734 0.99559 0.93894 0.92065 0.91119 0.91606 0.90942 0.89992 0.76699 0.89264 0.89234 0.92226 0.76173 0.85497 0.90672 0.86093 0.91872 0.91527 0.91893 0.91915 0.91540 0.91497 0.90693 0.89755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 9.48 37.15 0.35 -0.90 16 2 C 0.13 1.16 2.73 -67.93 -0.19 0.97 16 3 H 0.10 0.96 7.58 -51.93 -0.39 0.57 16 4 C 0.11 1.20 5.23 -4.05 -0.02 1.18 16 5 N -0.74 -9.38 5.39 -60.30 -0.32 -9.71 16 6 C 0.53 9.62 7.85 -10.99 -0.09 9.54 16 7 O -0.52 -11.42 15.86 5.56 0.09 -11.33 16 8 C -0.15 -3.05 6.16 36.01 0.22 -2.83 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 10 C -0.53 -15.15 9.50 30.94 0.29 -14.85 16 11 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 12 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 13 N -0.87 -26.05 13.22 55.49 0.73 -25.32 16 14 Si 0.92 21.32 29.55 -169.99 -5.02 16.30 16 15 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 18 N -0.72 -5.96 4.51 -54.99 -0.25 -6.21 16 19 C 0.55 5.42 7.58 -12.67 -0.10 5.32 16 20 O -0.54 -6.74 12.88 5.26 0.07 -6.67 16 21 C -0.24 -1.94 9.65 -37.81 -0.37 -2.30 16 22 C -0.01 -0.11 5.38 -100.61 -0.54 -0.66 16 23 C -0.12 -1.06 5.32 -27.26 -0.14 -1.21 16 24 C -0.12 -0.88 5.95 -26.40 -0.16 -1.04 16 25 C -0.12 -0.76 5.81 -26.77 -0.16 -0.91 16 26 C -0.12 -0.69 5.94 -26.64 -0.16 -0.84 16 27 C -0.09 -0.56 6.04 -27.49 -0.17 -0.73 16 28 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.40 4.30 8.14 -40.82 -0.33 3.96 16 34 H 0.09 1.63 8.14 -51.91 -0.42 1.20 16 35 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 36 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.40 2.79 8.59 -40.82 -0.35 2.44 16 38 H 0.13 0.79 7.96 -52.49 -0.42 0.37 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.12 1.34 4.79 -52.86 -0.25 1.09 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.07 0.39 7.92 -51.93 -0.41 -0.03 16 48 H 0.08 0.45 8.14 -51.92 -0.42 0.03 16 LS Contribution 404.64 15.07 6.10 6.10 Total: -1.00 -34.69 404.64 -10.17 -44.86 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -8.04 Total: 3.11 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -1.30 Total: -7.29 kcal Atomic # 7 Polarization: -41.40 SS G_CDS: 0.16 Total: -41.24 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: 0.16 Total: -18.01 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.69 -10.17 -44.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688124223.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.491 kcal (2) G-P(sol) polarization free energy of solvation -34.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds