Wall clock time and date at job start Sat Apr 11 2020 06:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47006 * 2 1 4 4 C 1.52998 * 109.47362 * 119.99835 * 2 1 3 5 5 N 1.46493 * 109.47333 * 175.00255 * 4 2 1 6 6 C 1.34772 * 120.00312 * 179.72772 * 5 4 2 7 7 O 1.21280 * 119.99855 * 0.27554 * 6 5 4 8 8 C 1.50702 * 120.00379 * 180.27574 * 6 5 4 9 9 S 1.81003 * 109.47346 * 180.02562 * 8 6 5 10 10 C 1.76191 * 99.99973 * 180.02562 * 9 8 6 11 11 H 1.08007 * 120.00466 * 359.97438 * 10 9 8 12 12 C 1.38802 * 120.00111 * 179.97438 * 10 9 8 13 13 N 1.31631 * 119.99916 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00358 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46885 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.47248 * 119.99906 * 14 12 10 17 17 H 1.48494 * 109.47541 * 240.00212 * 14 12 10 18 18 N 1.46501 * 109.47286 * 240.00486 * 2 1 3 19 19 C 1.34774 * 120.00258 * 84.99884 * 18 2 1 20 20 O 1.21619 * 119.99605 * 359.97438 * 19 18 2 21 21 C 1.47101 * 120.00032 * 180.02562 * 19 18 2 22 22 C 1.32995 * 119.99810 * 186.98406 * 21 19 18 23 23 C 1.51267 * 120.84995 * 12.16933 * 22 21 19 24 24 C 1.53665 * 108.31174 * 128.61849 * 23 22 21 25 25 C 1.52967 * 109.32198 * 54.85892 * 24 23 22 26 26 C 1.52954 * 109.81732 * 296.27277 * 25 24 23 27 27 C 1.51268 * 120.84845 * 192.44917 * 22 21 19 28 28 H 1.09009 * 109.47022 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47582 * 299.99763 * 1 2 3 30 30 H 1.08999 * 109.47375 * 60.00193 * 1 2 3 31 31 H 1.09003 * 109.46721 * 55.00550 * 4 2 1 32 32 H 1.09004 * 109.47311 * 295.00652 * 4 2 1 33 33 H 0.97003 * 120.00091 * 359.97438 * 5 4 2 34 34 H 1.09005 * 109.46804 * 299.99826 * 8 6 5 35 35 H 1.08997 * 109.46822 * 59.99843 * 8 6 5 36 36 H 0.96993 * 120.00223 * 180.02562 * 13 12 10 37 37 H 0.97003 * 119.99750 * 264.99516 * 18 2 1 38 38 H 1.07997 * 119.99853 * 6.98090 * 21 19 18 39 39 H 1.09000 * 109.62602 * 248.38981 * 23 22 21 40 40 H 1.09001 * 109.63135 * 8.95810 * 23 22 21 41 41 H 1.09000 * 109.62753 * 294.84541 * 24 23 22 42 42 H 1.08994 * 109.41881 * 174.74957 * 24 23 22 43 43 H 1.08995 * 109.41041 * 176.16613 * 25 24 23 44 44 H 1.08998 * 109.40850 * 56.38053 * 25 24 23 45 45 H 1.09000 * 109.48618 * 303.61895 * 26 25 24 46 46 H 1.09002 * 109.48608 * 183.57684 * 26 25 24 47 47 H 1.08992 * 109.62693 * 351.04187 * 27 22 21 48 48 H 1.09008 * 109.62336 * 111.60938 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5000 -0.8263 1.1906 6 6 4.1735 -1.4237 2.1935 7 8 3.5704 -1.8787 3.1423 8 6 5.6759 -1.5262 2.1361 9 16 6.2798 -2.3744 3.6168 10 6 8.0121 -2.3548 3.2955 11 1 8.3883 -1.9023 2.3898 12 6 8.8933 -2.9210 4.2062 13 7 8.4348 -3.4729 5.3098 14 14 10.7298 -2.9009 3.8653 15 1 10.9848 -2.2269 2.5668 16 1 11.4266 -2.1642 4.9501 17 1 11.2380 -4.2950 3.8081 18 7 2.0183 -0.6905 -1.1962 19 6 2.1471 -0.0181 -2.3571 20 8 1.8573 1.1618 -2.4118 21 6 2.6369 -0.7116 -3.5584 22 6 2.8962 -0.0216 -4.6653 23 6 2.9601 1.4895 -4.6403 24 6 4.2796 1.9278 -5.2946 25 6 4.3786 1.3164 -6.6932 26 6 4.4363 -0.2085 -6.5896 27 6 3.1285 -0.7275 -5.9829 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6054 -1.7198 1.2951 32 1 1.7516 -0.1583 2.1370 33 1 3.9823 -0.4627 0.4316 34 1 5.9680 -2.0902 1.2502 35 1 6.1068 -0.5262 2.0887 36 1 9.0506 -3.8682 5.9464 37 1 2.2491 -1.6317 -1.1527 38 1 2.7860 -1.7811 -3.5413 39 1 2.1179 1.9009 -5.1967 40 1 2.9274 1.8404 -3.6088 41 1 5.1194 1.5875 -4.6888 42 1 4.3029 3.0149 -5.3706 43 1 5.2807 1.6806 -7.1848 44 1 3.5060 1.6071 -7.2782 45 1 5.2724 -0.4983 -5.9532 46 1 4.5706 -0.6356 -7.5835 47 1 3.2039 -1.8016 -5.8144 48 1 2.3015 -0.5177 -6.6614 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688124223.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:07 Heat of formation + Delta-G solvation = -102.245802 kcal Electronic energy + Delta-G solvation = -26569.055492 eV Core-core repulsion = 22748.579299 eV Total energy + Delta-G solvation = -3820.476193 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.27344 -40.53254 -39.03240 -37.39027 -34.83469 -34.58051 -33.71296 -32.25691 -31.85728 -30.80078 -27.80307 -27.73639 -26.79559 -23.91356 -23.46185 -21.94585 -21.73221 -21.37236 -19.93741 -19.53375 -18.07965 -17.83121 -17.58776 -16.89435 -16.85372 -16.47806 -16.31866 -15.87314 -15.65533 -15.41271 -15.20012 -14.82734 -14.54214 -14.47912 -14.35028 -14.15977 -13.87016 -13.68111 -13.49525 -13.28840 -13.23620 -13.16062 -12.91536 -12.89975 -12.73427 -12.58616 -12.07720 -11.99969 -11.80760 -11.70803 -11.62203 -11.18520 -11.15973 -11.00324 -10.50727 -10.27741 -10.19136 -10.01361 -9.84619 -8.66501 -8.35033 -6.12686 0.40040 1.26619 1.41336 1.46764 1.57945 1.59163 2.13206 2.26613 2.29232 2.34603 2.99276 3.31580 3.55774 3.72155 3.79917 3.95075 4.04662 4.05735 4.07003 4.20315 4.26195 4.28946 4.35323 4.47697 4.50402 4.51449 4.57344 4.64803 4.70823 4.75773 4.80548 4.96326 4.99288 5.04829 5.14225 5.18442 5.19051 5.22242 5.33074 5.38021 5.42202 5.44371 5.53124 5.63446 5.74243 6.19949 6.42149 6.58290 7.06647 7.19381 7.29092 8.74355 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009957 B = 0.002334 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2811.374253 B =11995.649202 C =14290.150879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.143 3.857 3 H 0.085 0.915 4 C 0.116 3.884 5 N -0.713 5.713 6 C 0.537 3.463 7 O -0.561 6.561 8 C -0.131 4.131 9 S -0.148 6.148 10 C -0.545 4.545 11 H 0.082 0.918 12 C 0.013 3.987 13 N -0.911 5.911 14 Si 0.998 3.002 15 H -0.257 1.257 16 H -0.275 1.275 17 H -0.273 1.273 18 N -0.716 5.716 19 C 0.547 3.453 20 O -0.570 6.570 21 C -0.246 4.246 22 C -0.017 4.017 23 C -0.122 4.122 24 C -0.117 4.117 25 C -0.122 4.122 26 C -0.117 4.117 27 C -0.092 4.092 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.412 0.588 34 H 0.110 0.890 35 H 0.105 0.895 36 H 0.271 0.729 37 H 0.412 0.588 38 H 0.149 0.851 39 H 0.072 0.928 40 H 0.097 0.903 41 H 0.054 0.946 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.059 0.941 46 H 0.081 0.919 47 H 0.087 0.913 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.232 7.841 -26.861 30.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.037 3.963 3 H 0.103 0.897 4 C -0.008 4.008 5 N -0.367 5.367 6 C 0.322 3.678 7 O -0.439 6.439 8 C -0.282 4.282 9 S 0.079 5.921 10 C -0.693 4.693 11 H 0.100 0.900 12 C -0.192 4.192 13 N -0.547 5.547 14 Si 0.820 3.180 15 H -0.181 1.181 16 H -0.200 1.200 17 H -0.199 1.199 18 N -0.367 5.367 19 C 0.339 3.661 20 O -0.453 6.453 21 C -0.266 4.266 22 C -0.019 4.019 23 C -0.159 4.159 24 C -0.154 4.154 25 C -0.160 4.160 26 C -0.155 4.155 27 C -0.129 4.129 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.074 0.926 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.248 0.752 34 H 0.129 0.871 35 H 0.124 0.876 36 H 0.080 0.920 37 H 0.249 0.751 38 H 0.167 0.833 39 H 0.091 0.909 40 H 0.115 0.885 41 H 0.073 0.927 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.078 0.922 46 H 0.100 0.900 47 H 0.106 0.894 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -14.432 7.822 -25.152 30.035 hybrid contribution 1.915 0.147 -0.936 2.137 sum -12.517 7.969 -26.088 30.013 Atomic orbital electron populations 1.22049 0.93009 1.03268 1.02998 1.21073 0.95576 0.96948 0.82658 0.89691 1.21730 0.79315 1.01822 0.97942 1.45727 1.07774 1.60047 1.23183 1.19993 0.88793 0.76962 0.82020 1.90702 1.70364 1.48320 1.34561 1.23377 0.94860 1.05668 1.04326 1.85546 1.05715 1.75165 1.25649 1.23225 0.91681 1.44430 1.09966 0.90025 1.26120 1.05183 0.93833 0.94037 1.70181 1.37306 1.36709 1.10535 0.84910 0.75952 0.78311 0.78805 1.18086 1.20019 1.19857 1.45998 1.67075 1.14720 1.08941 1.18918 0.77176 0.86062 0.83969 1.90631 1.52193 1.17149 1.85313 1.22417 1.10069 1.01413 0.92716 1.22959 0.87897 0.96282 0.94725 1.21598 0.97828 0.92006 1.04421 1.21665 0.96557 1.00575 0.96612 1.21565 1.02490 0.95567 0.96371 1.21588 0.96715 0.95586 1.01590 1.21041 0.99093 1.00027 0.92737 0.91103 0.90203 0.92595 0.90448 0.90245 0.75174 0.87139 0.87633 0.91986 0.75136 0.83295 0.90935 0.88487 0.92707 0.91468 0.91248 0.91419 0.92195 0.90026 0.89441 0.88859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.48 71.98 0.68 -1.53 16 2 C 0.14 2.31 2.73 44.99 0.12 2.44 16 3 H 0.09 1.63 7.58 -2.39 -0.02 1.61 16 4 C 0.12 2.28 5.23 86.38 0.45 2.73 16 5 N -0.71 -16.90 5.39 -463.07 -2.49 -19.39 16 6 C 0.54 18.95 7.85 87.66 0.69 19.64 16 7 O -0.56 -24.98 15.86 -3.03 -0.05 -25.02 16 8 C -0.13 -5.08 6.16 71.24 0.44 -4.65 16 9 S -0.15 -8.11 20.57 -56.49 -1.16 -9.27 16 10 C -0.55 -30.89 9.50 67.96 0.65 -30.25 16 11 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 12 C 0.01 0.74 5.49 84.86 0.47 1.20 16 13 N -0.91 -55.61 13.22 21.65 0.29 -55.33 16 14 Si 1.00 43.35 29.55 68.60 2.03 45.38 16 15 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 16 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 17 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 18 N -0.72 -10.65 4.51 -446.14 -2.01 -12.66 16 19 C 0.55 10.20 7.58 86.57 0.66 10.86 16 20 O -0.57 -14.24 12.88 -4.09 -0.05 -14.29 16 21 C -0.25 -3.60 9.65 23.43 0.23 -3.37 16 22 C -0.02 -0.24 5.38 -17.26 -0.09 -0.34 16 23 C -0.12 -2.10 5.32 30.25 0.16 -1.94 16 24 C -0.12 -1.66 5.95 30.81 0.18 -1.47 16 25 C -0.12 -1.29 5.81 30.57 0.18 -1.12 16 26 C -0.12 -1.10 5.94 30.66 0.18 -0.92 16 27 C -0.09 -0.88 6.04 30.11 0.18 -0.70 16 28 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 29 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 33 H 0.41 7.93 8.14 -92.71 -0.75 7.18 16 34 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 35 H 0.11 3.76 8.14 -2.40 -0.02 3.74 16 36 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 37 H 0.41 4.78 8.59 -92.71 -0.80 3.99 16 38 H 0.15 1.45 7.96 -2.91 -0.02 1.43 16 39 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.10 2.20 4.79 -17.12 -0.08 2.12 16 41 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 46 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 47 H 0.09 0.64 7.92 -2.39 -0.02 0.62 16 48 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 Total: -1.00 -77.05 404.64 1.06 -75.99 By element: Atomic # 1 Polarization: 24.67 SS G_CDS: -0.66 Total: 24.01 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: 5.17 Total: -9.41 kcal Atomic # 7 Polarization: -83.16 SS G_CDS: -4.22 Total: -87.38 kcal Atomic # 8 Polarization: -39.21 SS G_CDS: -0.10 Total: -39.31 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 16 Polarization: -8.11 SS G_CDS: -1.16 Total: -9.27 kcal Total: -77.05 1.06 -75.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688124223.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.252 kcal (2) G-P(sol) polarization free energy of solvation -77.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds