Wall clock time and date at job start Sat Apr 11 2020 06:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47017 * 2 1 4 4 C 1.52997 * 109.47404 * 120.00357 * 2 1 3 5 5 N 1.46505 * 109.47212 * 174.99693 * 4 2 1 6 6 C 1.34771 * 119.99622 * 179.97438 * 5 4 2 7 7 O 1.21280 * 120.00597 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.99622 * 179.97438 * 6 5 4 9 9 S 1.81002 * 109.47156 * 180.02562 * 8 6 5 10 10 C 1.76204 * 100.00151 * 180.02562 * 9 8 6 11 11 H 1.08000 * 119.99845 * 359.97438 * 10 9 8 12 12 C 1.38796 * 120.00054 * 180.02562 * 10 9 8 13 13 N 1.31631 * 120.00100 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 119.99948 * 179.97438 * 12 10 9 15 15 H 1.48493 * 109.47251 * 59.99888 * 14 12 10 16 16 H 1.48499 * 109.47003 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47069 * 299.99979 * 14 12 10 18 18 N 1.46500 * 109.46849 * 240.00422 * 2 1 3 19 19 C 1.34779 * 120.00196 * 84.99779 * 18 2 1 20 20 O 1.21277 * 119.99823 * 0.02562 * 19 18 2 21 21 C 1.50698 * 119.99934 * 180.02562 * 19 18 2 22 22 H 1.08995 * 115.55404 * 34.33111 * 21 19 18 23 23 C 1.53005 * 117.49761 * 248.62274 * 21 19 18 24 24 C 1.53005 * 60.00069 * 252.50873 * 23 21 19 25 25 H 1.09005 * 117.51035 * 107.47646 * 24 23 21 26 26 C 1.52990 * 117.50250 * 252.50828 * 24 23 21 27 27 C 1.53778 * 113.61735 * 226.11782 * 26 24 23 28 28 C 1.53774 * 87.08434 * 220.02018 * 27 26 24 29 29 C 1.53782 * 87.08209 * 25.43030 * 28 27 26 30 30 H 1.08996 * 109.47654 * 59.99454 * 1 2 3 31 31 H 1.09000 * 109.47476 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.46970 * 299.99692 * 1 2 3 33 33 H 1.09002 * 109.47153 * 54.99686 * 4 2 1 34 34 H 1.09001 * 109.46832 * 294.99876 * 4 2 1 35 35 H 0.96996 * 119.99606 * 0.02562 * 5 4 2 36 36 H 1.09001 * 109.47380 * 300.00190 * 8 6 5 37 37 H 1.09002 * 109.47060 * 60.00278 * 8 6 5 38 38 H 0.96999 * 120.00126 * 180.02562 * 13 12 10 39 39 H 0.96998 * 120.00051 * 264.99732 * 18 2 1 40 40 H 1.08998 * 117.50153 * 359.97438 * 23 21 19 41 41 H 1.08996 * 117.49743 * 145.02222 * 23 21 19 42 42 H 1.09004 * 112.84919 * 357.42787 * 26 24 23 43 43 H 1.09000 * 113.61351 * 334.57223 * 27 26 24 44 44 H 1.09007 * 113.61186 * 105.47255 * 27 26 24 45 45 H 1.09010 * 113.61073 * 270.88674 * 28 27 26 46 46 H 1.08990 * 113.61891 * 139.98396 * 28 27 26 47 47 H 1.09000 * 113.61733 * 220.02129 * 29 28 27 48 48 H 1.09001 * 113.68764 * 89.12804 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8265 1.1904 6 6 4.1731 -1.4284 2.1909 7 8 3.5700 -1.8834 3.1397 8 6 5.6749 -1.5371 2.1302 9 16 6.2783 -2.3903 3.6081 10 6 8.0101 -2.3774 3.2832 11 1 8.3863 -1.9249 2.3776 12 6 8.8907 -2.9497 4.1907 13 7 8.4321 -3.5025 5.2938 14 14 10.7266 -2.9367 3.8459 15 1 11.1976 -1.5336 3.7250 16 1 11.4442 -3.6060 4.9604 17 1 10.9972 -3.6607 2.5779 18 7 2.0182 -0.6905 -1.1962 19 6 2.1469 -0.0181 -2.3572 20 8 1.8589 1.1587 -2.4115 21 6 2.6486 -0.7287 -3.5878 22 1 2.3507 -1.7729 -3.6821 23 6 4.0304 -0.3373 -4.1155 24 6 2.7726 0.0895 -4.8748 25 1 2.4909 1.1416 -4.8313 26 6 2.4694 -0.6208 -6.1955 27 6 2.0824 0.3364 -7.3351 28 6 1.0271 -0.7043 -7.7453 29 6 1.0381 -1.1764 -6.2818 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.6054 -1.7199 1.2951 34 1 1.7517 -0.1584 2.1369 35 1 3.9824 -0.4622 0.4317 36 1 5.9629 -2.1007 1.2428 37 1 6.1099 -0.5387 2.0836 38 1 9.0476 -3.9022 5.9281 39 1 2.2489 -1.6317 -1.1528 40 1 4.5764 0.4343 -3.5728 41 1 4.6420 -1.1242 -4.5569 42 1 3.2361 -1.3444 -6.4726 43 1 1.6558 1.2777 -6.9888 44 1 2.8702 0.4746 -8.0758 45 1 1.3995 -1.4503 -8.4475 46 1 0.0789 -0.2657 -8.0555 47 1 0.9827 -2.2595 -6.1719 48 1 0.3262 -0.6496 -5.6463 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689448927.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:23 Heat of formation + Delta-G solvation = -67.951908 kcal Electronic energy + Delta-G solvation = -26351.167623 eV Core-core repulsion = 22532.178525 eV Total energy + Delta-G solvation = -3818.989098 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.39490 -40.61467 -39.74732 -37.66452 -36.43660 -34.83743 -34.57385 -32.35368 -30.80694 -27.73660 -27.40911 -26.83720 -26.44909 -25.22477 -22.41985 -21.90571 -21.73301 -21.16599 -20.24105 -19.84248 -18.49445 -17.83580 -17.63509 -17.06034 -16.87074 -16.53838 -16.40901 -16.12759 -15.82728 -15.80557 -15.25267 -14.83583 -14.54468 -14.30290 -14.22832 -13.88561 -13.64426 -13.41776 -13.30816 -13.28809 -13.25336 -13.16517 -12.99370 -12.86183 -12.70908 -12.61631 -12.10825 -11.86209 -11.74015 -11.53370 -11.37005 -11.12492 -11.00502 -10.98362 -10.87651 -10.62339 -10.27848 -10.21982 -10.16491 -8.65894 -8.34085 -6.11981 1.26718 1.44139 1.45864 1.47269 1.56433 1.59218 2.02077 2.26048 2.29808 2.83731 2.99968 3.31993 3.51813 3.58517 3.69389 3.76013 3.93014 3.95374 3.98718 4.03566 4.11898 4.16973 4.22231 4.29053 4.30544 4.51019 4.53745 4.56349 4.70074 4.74217 4.82837 4.89159 4.90535 4.91614 4.96373 5.05825 5.11576 5.13085 5.20143 5.27406 5.36005 5.40411 5.42208 5.45209 5.66835 6.20055 6.41824 6.49370 7.07247 7.19089 7.20766 8.74679 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012580 B = 0.002060 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.221104 B =13587.620888 C =15375.891402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.141 3.859 3 H 0.083 0.917 4 C 0.116 3.884 5 N -0.713 5.713 6 C 0.537 3.463 7 O -0.562 6.562 8 C -0.131 4.131 9 S -0.148 6.148 10 C -0.547 4.547 11 H 0.082 0.918 12 C 0.014 3.986 13 N -0.910 5.910 14 Si 0.997 3.003 15 H -0.263 1.263 16 H -0.279 1.279 17 H -0.261 1.261 18 N -0.713 5.713 19 C 0.544 3.456 20 O -0.580 6.580 21 C -0.187 4.187 22 H 0.144 0.856 23 C -0.141 4.141 24 C -0.109 4.109 25 H 0.095 0.905 26 C -0.079 4.079 27 C -0.137 4.137 28 C -0.143 4.143 29 C -0.135 4.135 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.412 0.588 36 H 0.112 0.888 37 H 0.105 0.895 38 H 0.271 0.729 39 H 0.414 0.586 40 H 0.089 0.911 41 H 0.125 0.875 42 H 0.105 0.895 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.089 0.911 46 H 0.066 0.934 47 H 0.074 0.926 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.847 5.821 -26.670 31.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.036 3.964 3 H 0.101 0.899 4 C -0.008 4.008 5 N -0.367 5.367 6 C 0.323 3.677 7 O -0.439 6.439 8 C -0.282 4.282 9 S 0.079 5.921 10 C -0.695 4.695 11 H 0.100 0.900 12 C -0.191 4.191 13 N -0.547 5.547 14 Si 0.819 3.181 15 H -0.188 1.188 16 H -0.205 1.205 17 H -0.186 1.186 18 N -0.366 5.366 19 C 0.332 3.668 20 O -0.460 6.460 21 C -0.208 4.208 22 H 0.162 0.838 23 C -0.179 4.179 24 C -0.128 4.128 25 H 0.113 0.887 26 C -0.097 4.097 27 C -0.175 4.175 28 C -0.180 4.180 29 C -0.173 4.173 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.248 0.752 36 H 0.130 0.870 37 H 0.124 0.876 38 H 0.080 0.920 39 H 0.251 0.749 40 H 0.108 0.892 41 H 0.143 0.857 42 H 0.123 0.877 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.108 0.892 46 H 0.085 0.915 47 H 0.093 0.907 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -16.055 5.817 -24.960 30.242 hybrid contribution 1.849 0.313 -0.891 2.076 sum -14.206 6.131 -25.850 30.127 Atomic orbital electron populations 1.22053 0.92938 1.03396 1.02999 1.21095 0.95644 0.96899 0.82716 0.89886 1.21724 0.79381 1.01856 0.97812 1.45720 1.07741 1.59912 1.23375 1.19998 0.88805 0.76942 0.82001 1.90704 1.70351 1.48406 1.34486 1.23377 0.94813 1.05661 1.04374 1.85550 1.05731 1.74946 1.25830 1.23171 0.91774 1.44440 1.10137 0.89952 1.26113 1.05151 0.93825 0.94044 1.70171 1.37442 1.36448 1.10608 0.85023 0.75823 0.79019 0.78267 1.18800 1.20451 1.18555 1.46000 1.66908 1.14824 1.08834 1.20094 0.76075 0.86180 0.84436 1.90689 1.51868 1.17848 1.85582 1.22281 1.04091 1.01666 0.92771 0.83820 1.23169 0.89185 1.03585 1.01913 1.22331 1.01160 0.98730 0.90583 0.88724 1.22221 0.97637 0.97952 0.91909 1.22961 0.99173 0.97434 0.97884 1.22836 0.99447 0.99006 0.96703 1.22902 0.96350 1.01057 0.96943 0.92720 0.90890 0.90131 0.90317 0.90232 0.75158 0.87028 0.87634 0.92001 0.74926 0.89203 0.85710 0.87675 0.90822 0.90827 0.89232 0.91521 0.90739 0.91136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 9.48 71.98 0.68 -1.50 16 2 C 0.14 2.26 2.73 44.99 0.12 2.39 16 3 H 0.08 1.60 7.58 -2.39 -0.02 1.58 16 4 C 0.12 2.24 5.23 86.38 0.45 2.69 16 5 N -0.71 -16.50 5.39 -463.06 -2.49 -19.00 16 6 C 0.54 18.68 7.85 87.66 0.69 19.37 16 7 O -0.56 -24.74 15.86 -3.03 -0.05 -24.79 16 8 C -0.13 -5.01 6.16 71.24 0.44 -4.57 16 9 S -0.15 -8.04 20.57 -56.49 -1.16 -9.21 16 10 C -0.55 -30.83 9.50 67.95 0.65 -30.18 16 11 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 12 C 0.01 0.76 5.49 84.86 0.47 1.23 16 13 N -0.91 -55.40 13.22 21.65 0.29 -55.11 16 14 Si 1.00 43.07 29.55 68.60 2.03 45.10 16 15 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 16 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 17 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 18 N -0.71 -10.18 4.52 -442.55 -2.00 -12.18 16 19 C 0.54 9.86 7.58 87.66 0.66 10.52 16 20 O -0.58 -15.24 15.92 -3.02 -0.05 -15.29 16 21 C -0.19 -2.42 5.71 -11.54 -0.07 -2.49 16 22 H 0.14 1.26 8.14 -2.39 -0.02 1.24 16 23 C -0.14 -1.71 9.92 30.60 0.30 -1.40 16 24 C -0.11 -1.50 5.06 -10.79 -0.05 -1.56 16 25 H 0.09 1.77 7.50 -2.38 -0.02 1.75 16 26 C -0.08 -0.82 3.88 -10.27 -0.04 -0.86 16 27 C -0.14 -1.45 7.63 31.12 0.24 -1.22 16 28 C -0.14 -1.33 8.08 31.12 0.25 -1.08 16 29 C -0.14 -1.40 7.45 31.12 0.23 -1.16 16 30 H 0.05 0.92 8.14 -2.39 -0.02 0.91 16 31 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 33 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.41 7.65 8.14 -92.71 -0.75 6.89 16 36 H 0.11 3.77 8.14 -2.40 -0.02 3.75 16 37 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 38 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 39 H 0.41 4.44 8.60 -92.71 -0.80 3.65 16 40 H 0.09 1.29 8.14 -2.39 -0.02 1.28 16 41 H 0.12 1.04 8.13 -2.39 -0.02 1.02 16 42 H 0.11 0.86 8.07 -2.38 -0.02 0.84 16 43 H 0.07 0.91 7.98 -2.39 -0.02 0.89 16 44 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 45 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 46 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 47 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 48 H 0.07 0.90 8.10 -2.39 -0.02 0.88 16 Total: -1.00 -77.70 414.18 0.99 -76.70 By element: Atomic # 1 Polarization: 24.20 SS G_CDS: -0.59 Total: 23.61 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: 5.02 Total: -9.83 kcal Atomic # 7 Polarization: -82.08 SS G_CDS: -4.21 Total: -86.29 kcal Atomic # 8 Polarization: -39.99 SS G_CDS: -0.10 Total: -40.08 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 16 Polarization: -8.04 SS G_CDS: -1.16 Total: -9.21 kcal Total: -77.70 0.99 -76.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689448927.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.751 kcal (2) G-P(sol) polarization free energy of solvation -77.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds