Wall clock time and date at job start Sat Apr 11 2020 06:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47201 * 1 3 3 C 1.17401 * 179.97438 * 2 1 4 4 C 1.47201 * 179.97438 * 180.02562 * 3 2 1 5 5 N 1.46904 * 109.47130 * 291.38045 * 4 3 2 6 6 C 1.46899 * 111.00029 * 180.02562 * 5 4 3 7 7 C 1.52997 * 109.47254 * 179.97438 * 6 5 4 8 8 H 1.09002 * 110.64317 * 56.68709 * 7 6 5 9 9 C 1.54330 * 110.72125 * 293.54572 * 7 6 5 10 10 N 1.47023 * 107.27020 * 219.44185 * 9 7 6 11 11 C 1.34777 * 125.64227 * 178.90312 * 10 9 7 12 12 O 1.21276 * 120.00670 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.99504 * 180.02562 * 11 10 9 14 14 S 1.80998 * 109.47053 * 180.02562 * 13 11 10 15 15 C 1.76205 * 100.00141 * 179.97438 * 14 13 11 16 16 H 1.07995 * 119.99553 * 0.02562 * 15 14 13 17 17 C 1.38797 * 120.00201 * 179.97438 * 15 14 13 18 18 N 1.31622 * 120.00299 * 180.02562 * 17 15 14 19 19 Si 1.86806 * 119.99899 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.46822 * 90.00158 * 19 17 15 21 21 H 1.48496 * 109.47080 * 210.00215 * 19 17 15 22 22 H 1.48498 * 109.47244 * 330.00413 * 19 17 15 23 23 C 1.47423 * 108.70235 * 358.94091 * 10 9 7 24 24 C 1.54908 * 104.83357 * 24.12824 * 23 10 9 25 25 H 1.08993 * 111.00333 * 81.06738 * 24 23 10 26 26 O 1.42898 * 111.00079 * 204.91572 * 24 23 10 27 27 C 1.42903 * 114.00065 * 262.19300 * 26 24 23 28 28 C 1.52997 * 109.47200 * 180.02562 * 27 26 24 29 29 H 1.08999 * 109.47171 * 68.61848 * 1 2 3 30 30 H 1.08996 * 109.46688 * 188.62316 * 1 2 3 31 31 H 1.09003 * 109.46993 * 308.62294 * 1 2 3 32 32 H 1.08995 * 109.47135 * 171.37977 * 4 3 2 33 33 H 1.09003 * 109.47439 * 51.37412 * 4 3 2 34 34 H 1.00902 * 111.00190 * 56.03892 * 5 4 3 35 35 H 1.09002 * 109.47043 * 299.99792 * 6 5 4 36 36 H 1.09001 * 109.47354 * 59.99854 * 6 5 4 37 37 H 1.08993 * 109.87804 * 338.86274 * 9 7 6 38 38 H 1.09002 * 109.88082 * 99.86747 * 9 7 6 39 39 H 1.09000 * 109.46935 * 300.00183 * 13 11 10 40 40 H 1.08994 * 109.47151 * 60.00060 * 13 11 10 41 41 H 0.96993 * 120.00469 * 180.02562 * 18 17 15 42 42 H 1.09003 * 110.36451 * 142.97040 * 23 10 9 43 43 H 1.08997 * 110.36240 * 265.17564 * 23 10 9 44 44 H 1.08992 * 109.46942 * 300.00584 * 27 26 24 45 45 H 1.09002 * 109.46968 * 60.00292 * 27 26 24 46 46 H 1.09004 * 109.47333 * 180.02562 * 28 27 26 47 47 H 1.09007 * 109.47064 * 299.99973 * 28 27 26 48 48 H 1.08994 * 109.47388 * 60.00108 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 0.0000 5 7 4.6082 -0.5026 1.2897 6 6 6.0767 -0.5150 1.3264 7 6 6.5485 -1.0447 2.6820 8 1 6.1351 -2.0351 2.8727 9 6 6.1667 -0.0668 3.8133 10 7 7.2950 -0.0268 4.7550 11 6 7.3613 0.7278 5.8698 12 8 6.4361 1.4535 6.1668 13 6 8.5851 0.6697 6.7472 14 16 8.3716 1.7871 8.1551 15 6 9.9023 1.5258 8.9880 16 1 10.6267 0.8353 8.5822 17 6 10.1773 2.2081 10.1649 18 7 11.3208 2.0134 10.7868 19 14 8.9249 3.4041 10.8656 20 1 8.0136 2.6819 11.7891 21 1 9.6295 4.4808 11.6069 22 1 8.1361 4.0004 9.7577 23 6 8.3422 -0.9481 4.2774 24 6 8.0982 -1.0695 2.7525 25 1 8.5272 -0.2212 2.2194 26 8 8.6142 -2.3029 2.2480 27 6 9.9083 -2.1913 1.6523 28 6 10.3584 -3.5644 1.1493 29 1 -0.3633 0.3747 -0.9569 30 1 -0.3632 -1.0160 0.1541 31 1 -0.3633 0.6415 0.8029 32 1 4.4805 1.0182 -0.1540 33 1 4.4820 -0.6393 -0.8029 34 1 4.2334 -1.4188 1.4857 35 1 6.4545 -1.1595 0.5327 36 1 6.4523 0.4979 1.1818 37 1 5.9925 0.9270 3.4010 38 1 5.2692 -0.4197 4.3212 39 1 8.7241 -0.3487 7.1099 40 1 9.4596 0.9730 6.1716 41 1 11.5129 2.4899 11.6095 42 1 9.3308 -0.5320 4.4715 43 1 8.2397 -1.9208 4.7585 44 1 9.8640 -1.4947 0.8152 45 1 10.6188 -1.8245 2.3930 46 1 11.3457 -3.4793 0.6953 47 1 10.4026 -4.2613 1.9863 48 1 9.6478 -3.9308 0.4085 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691741225.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:34 Heat of formation + Delta-G solvation = -32.863177 kcal Electronic energy + Delta-G solvation = -26423.657543 eV Core-core repulsion = 22606.190007 eV Total energy + Delta-G solvation = -3817.467536 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.27957 -38.49402 -37.34455 -36.18233 -34.21509 -32.43821 -32.34385 -31.38565 -29.78734 -28.88279 -28.30345 -25.97199 -25.56178 -24.24236 -23.34251 -22.43676 -20.87013 -19.46240 -17.84725 -17.50879 -17.26123 -16.65215 -16.07008 -15.94968 -15.53504 -15.42806 -15.14407 -14.92419 -14.59915 -14.53710 -14.11297 -13.84744 -13.78905 -13.61254 -13.47125 -13.31805 -13.14866 -12.84874 -12.80163 -12.57564 -12.47278 -12.18526 -11.95356 -11.66492 -11.49133 -11.42397 -11.24360 -10.99905 -10.94461 -10.59552 -10.29874 -10.10957 -9.92640 -9.84461 -9.47695 -8.99205 -8.87650 -8.55906 -8.48151 -6.90814 -6.27914 -3.99596 2.27485 2.42181 2.65315 2.95681 3.06830 3.34077 3.37944 3.52296 3.62802 3.72223 3.99168 4.20156 4.34138 4.39577 4.47076 4.70462 4.72042 4.77500 4.83029 4.89134 5.02405 5.04514 5.05659 5.09158 5.11276 5.18485 5.19964 5.23515 5.30368 5.32508 5.35075 5.44032 5.45513 5.54794 5.56891 5.61901 5.75787 5.79668 5.88316 5.95209 6.02001 6.32186 6.47789 6.84589 6.89335 7.34569 7.57388 7.95085 8.42338 8.45802 9.18325 10.81235 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009569 B = 0.002439 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2925.525923 B =11475.514547 C =14205.796890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 C -0.176 4.176 3 C -0.190 4.190 4 C 0.176 3.824 5 N -0.685 5.685 6 C 0.071 3.929 7 C -0.094 4.094 8 H 0.096 0.904 9 C 0.127 3.873 10 N -0.624 5.624 11 C 0.548 3.452 12 O -0.514 6.514 13 C -0.118 4.118 14 S -0.142 6.142 15 C -0.521 4.521 16 H 0.088 0.912 17 C 0.096 3.904 18 N -0.880 5.880 19 Si 0.856 3.144 20 H -0.267 1.267 21 H -0.274 1.274 22 H -0.235 1.235 23 C 0.083 3.917 24 C 0.083 3.917 25 H 0.082 0.918 26 O -0.371 6.371 27 C 0.054 3.946 28 C -0.151 4.151 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.053 0.947 34 H 0.347 0.653 35 H 0.042 0.958 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.271 0.729 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.049 0.951 45 H 0.053 0.947 46 H 0.071 0.929 47 H 0.064 0.936 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.433 -10.155 -27.039 30.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.178 4.178 3 C -0.190 4.190 4 C 0.048 3.952 5 N -0.317 5.317 6 C -0.058 4.058 7 C -0.113 4.113 8 H 0.114 0.886 9 C 0.004 3.996 10 N -0.363 5.363 11 C 0.336 3.664 12 O -0.388 6.388 13 C -0.269 4.269 14 S 0.085 5.915 15 C -0.668 4.668 16 H 0.106 0.894 17 C -0.113 4.113 18 N -0.517 5.517 19 Si 0.681 3.319 20 H -0.192 1.192 21 H -0.200 1.200 22 H -0.159 1.159 23 C -0.042 4.042 24 C 0.023 3.977 25 H 0.100 0.900 26 O -0.290 6.290 27 C -0.023 4.023 28 C -0.209 4.209 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.113 0.887 33 H 0.071 0.929 34 H 0.165 0.835 35 H 0.060 0.940 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.080 0.920 42 H 0.100 0.900 43 H 0.098 0.902 44 H 0.068 0.932 45 H 0.072 0.928 46 H 0.090 0.910 47 H 0.084 0.916 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.813 -8.541 -26.045 29.847 hybrid contribution 1.218 -0.952 -0.406 1.598 sum -10.595 -9.493 -26.451 30.034 Atomic orbital electron populations 1.18883 0.84626 1.03151 1.03103 1.22453 0.93942 1.01223 1.00159 1.22060 0.93343 1.01679 1.01917 1.18745 0.84386 1.01482 0.90600 1.60400 1.07870 1.32213 1.31178 1.21963 0.87085 1.01296 0.95501 1.22326 0.93827 1.00466 0.94674 0.88588 1.21792 0.89737 0.99534 0.88544 1.48346 1.19022 1.44130 1.24786 1.19965 0.88671 0.78460 0.79318 1.90715 1.38929 1.38523 1.70617 1.23264 0.97974 1.05436 1.00177 1.84801 1.27689 1.55039 1.23993 1.22305 1.01571 1.31280 1.11659 0.89413 1.24708 0.95254 0.95954 0.95387 1.69931 1.22436 1.41643 1.17680 0.86736 0.82042 0.81639 0.81456 1.19188 1.19951 1.15890 1.22682 0.92490 0.94864 0.94123 1.23202 0.93683 0.87426 0.93344 0.89958 1.87924 1.33437 1.30363 1.77252 1.22589 0.84522 0.98524 0.96633 1.21744 1.01128 0.96145 1.01841 0.90218 0.90155 0.89965 0.88696 0.92907 0.83468 0.93976 0.90246 0.90730 0.90909 0.88571 0.88642 0.91952 0.90039 0.90222 0.93232 0.92828 0.91011 0.91649 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.24 10.32 34.37 0.35 0.12 16 2 C -0.18 -1.64 14.13 -37.12 -0.52 -2.17 16 3 C -0.19 -1.83 13.60 -37.12 -0.50 -2.33 16 4 C 0.18 1.32 6.16 -6.61 -0.04 1.28 16 5 N -0.69 -5.51 6.28 -116.89 -0.73 -6.25 16 6 C 0.07 0.51 5.00 -3.83 -0.02 0.49 16 7 C -0.09 -0.82 2.87 -88.79 -0.26 -1.07 16 8 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 9 C 0.13 1.54 6.28 -3.06 -0.02 1.52 16 10 N -0.62 -8.97 3.33 -170.52 -0.57 -9.54 16 11 C 0.55 10.41 7.87 -10.98 -0.09 10.32 16 12 O -0.51 -11.71 16.19 5.56 0.09 -11.62 16 13 C -0.12 -2.38 5.16 36.01 0.19 -2.19 16 14 S -0.14 -3.66 18.55 -107.50 -1.99 -5.66 16 15 C -0.52 -15.12 10.04 30.94 0.31 -14.81 16 16 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 17 C 0.10 2.82 5.50 -17.44 -0.10 2.72 16 18 N -0.88 -26.66 13.97 55.49 0.78 -25.88 16 19 Si 0.86 21.99 27.74 -169.99 -4.72 17.27 16 20 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.23 -6.03 6.74 56.52 0.38 -5.65 16 23 C 0.08 0.92 6.43 -2.53 -0.02 0.91 16 24 C 0.08 0.74 2.99 -24.59 -0.07 0.66 16 25 H 0.08 0.66 7.74 -51.93 -0.40 0.26 16 26 O -0.37 -3.33 10.15 -35.23 -0.36 -3.68 16 27 C 0.05 0.38 6.49 37.16 0.24 0.62 16 28 C -0.15 -0.92 10.28 37.16 0.38 -0.54 16 29 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.35 2.61 8.71 -39.29 -0.34 2.27 16 35 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.08 0.58 8.06 -51.93 -0.42 0.16 16 37 H 0.07 0.97 7.76 -51.93 -0.40 0.57 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.10 1.83 8.14 -51.92 -0.42 1.40 16 40 H 0.10 1.78 7.85 -51.92 -0.41 1.37 16 41 H 0.27 7.61 8.31 -40.82 -0.34 7.28 16 42 H 0.08 0.88 7.48 -51.93 -0.39 0.49 16 43 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.05 0.30 8.12 -51.93 -0.42 -0.13 16 45 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 47 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 48 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 416.34 15.07 6.27 6.27 Total: -1.00 -35.30 416.34 -9.67 -44.97 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -8.28 Total: -1.43 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -0.16 Total: -4.46 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: -0.53 Total: -41.67 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -0.27 Total: -15.30 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.72 Total: 17.27 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -1.99 Total: -5.66 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -35.30 -9.67 -44.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691741225.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.103 kcal (2) G-P(sol) polarization free energy of solvation -35.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds