Wall clock time and date at job start Sat Apr 11 2020 06:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47201 * 1 3 3 C 1.17401 * 179.97438 * 2 1 4 4 C 1.47201 * 179.97438 * 180.02562 * 3 2 1 5 5 N 1.46904 * 109.47130 * 291.38045 * 4 3 2 6 6 C 1.46899 * 111.00029 * 180.02562 * 5 4 3 7 7 C 1.52997 * 109.47254 * 179.97438 * 6 5 4 8 8 H 1.09002 * 110.64317 * 56.68709 * 7 6 5 9 9 C 1.54330 * 110.72125 * 293.54572 * 7 6 5 10 10 N 1.47023 * 107.27020 * 219.44185 * 9 7 6 11 11 C 1.34777 * 125.64227 * 178.90312 * 10 9 7 12 12 O 1.21276 * 120.00670 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.99504 * 180.02562 * 11 10 9 14 14 S 1.80998 * 109.47053 * 180.02562 * 13 11 10 15 15 C 1.76205 * 100.00141 * 179.97438 * 14 13 11 16 16 H 1.07995 * 119.99553 * 0.02562 * 15 14 13 17 17 C 1.38797 * 120.00201 * 179.97438 * 15 14 13 18 18 N 1.31622 * 120.00299 * 180.02562 * 17 15 14 19 19 Si 1.86806 * 119.99899 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.46822 * 90.00158 * 19 17 15 21 21 H 1.48496 * 109.47080 * 210.00215 * 19 17 15 22 22 H 1.48498 * 109.47244 * 330.00413 * 19 17 15 23 23 C 1.47423 * 108.70235 * 358.94091 * 10 9 7 24 24 C 1.54908 * 104.83357 * 24.12824 * 23 10 9 25 25 H 1.08993 * 111.00333 * 81.06738 * 24 23 10 26 26 O 1.42898 * 111.00079 * 204.91572 * 24 23 10 27 27 C 1.42903 * 114.00065 * 262.19300 * 26 24 23 28 28 C 1.52997 * 109.47200 * 180.02562 * 27 26 24 29 29 H 1.08999 * 109.47171 * 68.61848 * 1 2 3 30 30 H 1.08996 * 109.46688 * 188.62316 * 1 2 3 31 31 H 1.09003 * 109.46993 * 308.62294 * 1 2 3 32 32 H 1.08995 * 109.47135 * 171.37977 * 4 3 2 33 33 H 1.09003 * 109.47439 * 51.37412 * 4 3 2 34 34 H 1.00902 * 111.00190 * 56.03892 * 5 4 3 35 35 H 1.09002 * 109.47043 * 299.99792 * 6 5 4 36 36 H 1.09001 * 109.47354 * 59.99854 * 6 5 4 37 37 H 1.08993 * 109.87804 * 338.86274 * 9 7 6 38 38 H 1.09002 * 109.88082 * 99.86747 * 9 7 6 39 39 H 1.09000 * 109.46935 * 300.00183 * 13 11 10 40 40 H 1.08994 * 109.47151 * 60.00060 * 13 11 10 41 41 H 0.96993 * 120.00469 * 180.02562 * 18 17 15 42 42 H 1.09003 * 110.36451 * 142.97040 * 23 10 9 43 43 H 1.08997 * 110.36240 * 265.17564 * 23 10 9 44 44 H 1.08992 * 109.46942 * 300.00584 * 27 26 24 45 45 H 1.09002 * 109.46968 * 60.00292 * 27 26 24 46 46 H 1.09004 * 109.47333 * 180.02562 * 28 27 26 47 47 H 1.09007 * 109.47064 * 299.99973 * 28 27 26 48 48 H 1.08994 * 109.47388 * 60.00108 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 0.0000 5 7 4.6082 -0.5026 1.2897 6 6 6.0767 -0.5150 1.3264 7 6 6.5485 -1.0447 2.6820 8 1 6.1351 -2.0351 2.8727 9 6 6.1667 -0.0668 3.8133 10 7 7.2950 -0.0268 4.7550 11 6 7.3613 0.7278 5.8698 12 8 6.4361 1.4535 6.1668 13 6 8.5851 0.6697 6.7472 14 16 8.3716 1.7871 8.1551 15 6 9.9023 1.5258 8.9880 16 1 10.6267 0.8353 8.5822 17 6 10.1773 2.2081 10.1649 18 7 11.3208 2.0134 10.7868 19 14 8.9249 3.4041 10.8656 20 1 8.0136 2.6819 11.7891 21 1 9.6295 4.4808 11.6069 22 1 8.1361 4.0004 9.7577 23 6 8.3422 -0.9481 4.2774 24 6 8.0982 -1.0695 2.7525 25 1 8.5272 -0.2212 2.2194 26 8 8.6142 -2.3029 2.2480 27 6 9.9083 -2.1913 1.6523 28 6 10.3584 -3.5644 1.1493 29 1 -0.3633 0.3747 -0.9569 30 1 -0.3632 -1.0160 0.1541 31 1 -0.3633 0.6415 0.8029 32 1 4.4805 1.0182 -0.1540 33 1 4.4820 -0.6393 -0.8029 34 1 4.2334 -1.4188 1.4857 35 1 6.4545 -1.1595 0.5327 36 1 6.4523 0.4979 1.1818 37 1 5.9925 0.9270 3.4010 38 1 5.2692 -0.4197 4.3212 39 1 8.7241 -0.3487 7.1099 40 1 9.4596 0.9730 6.1716 41 1 11.5129 2.4899 11.6095 42 1 9.3308 -0.5320 4.4715 43 1 8.2397 -1.9208 4.7585 44 1 9.8640 -1.4947 0.8152 45 1 10.6188 -1.8245 2.3930 46 1 11.3457 -3.4793 0.6953 47 1 10.4026 -4.2613 1.9863 48 1 9.6478 -3.9308 0.4085 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691741225.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:32 Heat of formation + Delta-G solvation = -56.754423 kcal Electronic energy + Delta-G solvation = -26424.693546 eV Core-core repulsion = 22606.190007 eV Total energy + Delta-G solvation = -3818.503539 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.35671 -39.62936 -38.00911 -37.11203 -34.89779 -34.68364 -33.24799 -32.02320 -30.97108 -29.75877 -29.15600 -27.88210 -26.68442 -25.06329 -23.90684 -23.19182 -21.66985 -20.82716 -19.67216 -18.40109 -18.23397 -17.72902 -17.16581 -16.85236 -16.75974 -16.58041 -16.27076 -16.04869 -15.75403 -15.39048 -15.17633 -14.91397 -14.74567 -14.53388 -14.33705 -14.21123 -14.16526 -13.97593 -13.66068 -13.42511 -13.36956 -13.30978 -13.09206 -13.01546 -12.86415 -12.67010 -12.32434 -12.19667 -12.04797 -11.87442 -11.67871 -11.18072 -11.12198 -10.90308 -10.71566 -10.57594 -10.51270 -9.79165 -9.43276 -9.02589 -8.52382 -6.23976 0.93407 1.30939 1.43443 1.46436 1.51650 1.62060 1.76229 1.92959 2.24305 2.57367 2.70536 2.85680 3.06846 3.34845 3.41646 3.59612 3.77352 3.82018 4.07273 4.12265 4.16249 4.24881 4.30549 4.34226 4.38800 4.47961 4.50611 4.55598 4.62339 4.65599 4.68341 4.74860 4.79581 4.81597 4.85197 4.86995 4.94602 5.08484 5.09039 5.13224 5.21017 5.33239 5.69892 5.90793 6.10176 6.20255 6.27670 6.32516 6.70210 6.92534 7.00267 8.59844 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009569 B = 0.002439 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2925.525923 B =11475.514547 C =14205.796890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 C -0.194 4.194 3 C -0.218 4.218 4 C 0.177 3.823 5 N -0.699 5.699 6 C 0.079 3.921 7 C -0.079 4.079 8 H 0.099 0.901 9 C 0.126 3.874 10 N -0.614 5.614 11 C 0.548 3.452 12 O -0.560 6.560 13 C -0.103 4.103 14 S -0.174 6.174 15 C -0.528 4.528 16 H 0.063 0.937 17 C 0.047 3.953 18 N -0.915 5.915 19 Si 0.913 3.087 20 H -0.263 1.263 21 H -0.257 1.257 22 H -0.238 1.238 23 C 0.073 3.927 24 C 0.094 3.906 25 H 0.098 0.902 26 O -0.379 6.379 27 C 0.046 3.954 28 C -0.150 4.150 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.071 0.929 34 H 0.349 0.651 35 H 0.059 0.941 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.108 0.892 40 H 0.113 0.887 41 H 0.277 0.723 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.065 0.935 45 H 0.054 0.946 46 H 0.086 0.914 47 H 0.055 0.945 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.860 -10.668 -29.089 32.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.196 4.196 3 C -0.219 4.219 4 C 0.050 3.950 5 N -0.331 5.331 6 C -0.050 4.050 7 C -0.099 4.099 8 H 0.118 0.882 9 C 0.004 3.996 10 N -0.349 5.349 11 C 0.336 3.664 12 O -0.438 6.438 13 C -0.253 4.253 14 S 0.052 5.948 15 C -0.676 4.676 16 H 0.081 0.919 17 C -0.159 4.159 18 N -0.553 5.553 19 Si 0.735 3.265 20 H -0.187 1.187 21 H -0.182 1.182 22 H -0.162 1.162 23 C -0.050 4.050 24 C 0.035 3.965 25 H 0.116 0.884 26 O -0.298 6.298 27 C -0.030 4.030 28 C -0.207 4.207 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.105 0.895 32 H 0.116 0.884 33 H 0.088 0.912 34 H 0.167 0.833 35 H 0.078 0.922 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.127 0.873 40 H 0.131 0.869 41 H 0.087 0.913 42 H 0.106 0.894 43 H 0.101 0.899 44 H 0.083 0.917 45 H 0.072 0.928 46 H 0.104 0.896 47 H 0.074 0.926 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.216 -9.096 -28.139 31.997 hybrid contribution 1.373 -0.938 0.096 1.666 sum -10.843 -10.034 -28.044 31.697 Atomic orbital electron populations 1.19082 0.82689 1.04173 1.04158 1.23382 0.95304 1.00994 0.99875 1.22728 0.94435 1.02210 1.02480 1.18813 0.83396 1.02022 0.90819 1.60376 1.08368 1.32492 1.31825 1.21896 0.86684 1.01730 0.94716 1.22226 0.93935 0.99588 0.94119 0.88229 1.21920 0.88648 1.00176 0.88890 1.48248 1.20483 1.42820 1.23376 1.19662 0.87592 0.78830 0.80291 1.90695 1.40146 1.40871 1.72104 1.23212 0.99528 1.04382 0.98226 1.84736 1.25918 1.57397 1.26704 1.22422 1.02401 1.30642 1.12111 0.91886 1.25540 0.96997 0.97558 0.95785 1.70003 1.23977 1.42851 1.18420 0.85885 0.79879 0.79992 0.80733 1.18734 1.18157 1.16152 1.22969 0.91755 0.94152 0.96088 1.23072 0.93604 0.88228 0.91624 0.88404 1.87926 1.34395 1.30181 1.77261 1.22786 0.83621 0.99460 0.97122 1.21757 1.01980 0.95433 1.01564 0.88648 0.88889 0.89472 0.88376 0.91172 0.83293 0.92244 0.89982 0.91449 0.92107 0.87332 0.86934 0.91320 0.89350 0.89882 0.91664 0.92814 0.89559 0.92554 0.91859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.46 10.32 70.18 0.72 0.26 16 2 C -0.19 -3.49 14.13 31.13 0.44 -3.05 16 3 C -0.22 -4.06 13.60 31.13 0.42 -3.64 16 4 C 0.18 2.41 6.16 84.50 0.52 2.93 16 5 N -0.70 -10.17 6.28 -523.72 -3.29 -13.46 16 6 C 0.08 0.94 5.00 86.30 0.43 1.37 16 7 C -0.08 -1.22 2.87 -9.61 -0.03 -1.25 16 8 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 9 C 0.13 2.94 6.28 86.73 0.54 3.48 16 10 N -0.61 -16.94 3.33 -811.79 -2.70 -19.64 16 11 C 0.55 20.60 7.87 87.66 0.69 21.29 16 12 O -0.56 -25.70 16.19 -3.02 -0.05 -25.74 16 13 C -0.10 -4.08 5.16 71.24 0.37 -3.71 16 14 S -0.17 -9.03 18.55 -56.49 -1.05 -10.08 16 15 C -0.53 -31.06 10.04 67.95 0.68 -30.38 16 16 H 0.06 3.89 8.03 -2.91 -0.02 3.87 16 17 C 0.05 2.77 5.50 84.86 0.47 3.23 16 18 N -0.91 -55.81 13.97 21.65 0.30 -55.51 16 19 Si 0.91 45.44 27.74 68.60 1.90 47.34 16 20 H -0.26 -12.78 7.11 99.48 0.71 -12.07 16 21 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 22 H -0.24 -11.85 6.74 99.48 0.67 -11.18 16 23 C 0.07 1.49 6.43 86.86 0.56 2.05 16 24 C 0.09 1.42 2.99 31.98 0.10 1.52 16 25 H 0.10 1.23 7.74 -2.39 -0.02 1.21 16 26 O -0.38 -5.74 10.15 -148.98 -1.51 -7.25 16 27 C 0.05 0.53 6.49 71.98 0.47 0.99 16 28 C -0.15 -1.48 10.28 71.98 0.74 -0.74 16 29 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.35 4.78 8.71 -89.69 -0.78 4.00 16 35 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.08 0.98 8.06 -2.39 -0.02 0.96 16 37 H 0.07 1.71 7.76 -2.39 -0.02 1.69 16 38 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.11 4.04 8.14 -2.40 -0.02 4.02 16 40 H 0.11 4.08 7.85 -2.40 -0.02 4.06 16 41 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16 42 H 0.09 1.71 7.48 -2.39 -0.02 1.69 16 43 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.07 0.56 8.12 -2.39 -0.02 0.54 16 45 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 46 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 47 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 48 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -76.78 416.34 0.86 -75.92 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: 0.12 Total: 14.03 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: 7.13 Total: -5.62 kcal Atomic # 7 Polarization: -82.92 SS G_CDS: -5.69 Total: -88.61 kcal Atomic # 8 Polarization: -31.43 SS G_CDS: -1.56 Total: -32.99 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.90 Total: 47.34 kcal Atomic # 16 Polarization: -9.03 SS G_CDS: -1.05 Total: -10.08 kcal Total: -76.78 0.86 -75.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691741225.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.169 kcal (2) G-P(sol) polarization free energy of solvation -76.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds