Wall clock time and date at job start Sat Apr 11 2020 06:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42905 * 114.00137 * 2 1 4 4 C 1.47193 * 109.47166 * 179.97438 * 3 2 1 5 5 C 3.40061 * 161.18877 * 359.97438 * 2 1 3 6 6 C 4.78782 * 168.18456 * 359.97438 * 2 1 3 7 7 N 1.46900 * 109.47304 * 22.56793 * 6 5 4 8 8 C 1.46895 * 111.00050 * 293.95225 * 7 6 5 9 9 C 1.46901 * 110.99800 * 169.99860 * 7 6 5 10 10 C 1.52996 * 109.46930 * 190.00067 * 9 7 6 11 11 H 1.09000 * 110.88942 * 302.57215 * 10 9 7 12 12 C 1.55157 * 111.00528 * 178.64904 * 10 9 7 13 13 C 1.54320 * 102.86673 * 206.22821 * 12 10 9 14 14 N 1.47021 * 107.27206 * 22.52802 * 13 12 10 15 15 C 1.34781 * 125.64992 * 180.96769 * 14 13 12 16 16 O 1.21274 * 120.00344 * 179.69253 * 15 14 13 17 17 C 1.50701 * 119.99423 * 359.69048 * 15 14 13 18 18 S 1.81001 * 109.46896 * 180.02562 * 17 15 14 19 19 C 1.76201 * 99.99894 * 180.02562 * 18 17 15 20 20 H 1.07991 * 120.00323 * 359.97438 * 19 18 17 21 21 C 1.38805 * 119.99766 * 179.97438 * 19 18 17 22 22 N 1.31633 * 120.00034 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46807 * 179.97438 * 23 21 19 25 25 H 1.48497 * 109.46906 * 300.00462 * 23 21 19 26 26 H 1.48498 * 109.47018 * 60.00200 * 23 21 19 27 27 C 1.47422 * 108.70588 * 0.70247 * 14 13 12 28 28 H 1.08994 * 109.46931 * 59.99459 * 1 2 3 29 29 H 1.09000 * 109.46970 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46744 * 299.99531 * 1 2 3 31 31 H 1.09001 * 109.46956 * 60.00350 * 3 2 1 32 32 H 1.09001 * 109.47162 * 300.00450 * 3 2 1 33 33 H 1.09001 * 109.47055 * 262.56778 * 6 5 4 34 34 H 1.09001 * 109.46996 * 142.56920 * 6 5 4 35 35 H 1.08995 * 109.47325 * 296.04457 * 8 7 6 36 36 H 1.08996 * 109.47052 * 56.04511 * 8 7 6 37 37 H 1.08999 * 109.47426 * 176.04446 * 8 7 6 38 38 H 1.09001 * 109.46945 * 70.00270 * 9 7 6 39 39 H 1.09000 * 109.47540 * 309.99848 * 9 7 6 40 40 H 1.08996 * 110.72374 * 324.79112 * 12 10 9 41 41 H 1.09005 * 110.71915 * 88.06400 * 12 10 9 42 42 H 1.08996 * 109.98932 * 263.05248 * 13 12 10 43 43 H 1.09002 * 109.77309 * 141.88293 * 13 12 10 44 44 H 1.09001 * 109.47454 * 60.00304 * 17 15 14 45 45 H 1.09003 * 109.47322 * 299.99933 * 17 15 14 46 46 H 0.97001 * 119.99662 * 179.97438 * 22 21 19 47 47 H 1.09006 * 110.36753 * 94.93529 * 27 14 13 48 48 H 1.09000 * 110.36960 * 217.14879 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.4776 1.1892 0.0006 5 6 4.6480 1.0965 -0.0005 6 6 6.1154 0.9804 -0.0004 7 7 6.5027 -0.3332 -0.5319 8 6 6.0667 -1.4129 0.3637 9 6 7.9509 -0.3988 -0.7695 10 6 8.2827 -1.6736 -1.5477 11 1 7.9378 -2.5574 -1.0111 12 6 9.8024 -1.7622 -1.8480 13 6 9.8508 -2.6318 -3.1219 14 7 8.5368 -2.5260 -3.7729 15 6 8.1691 -3.1548 -4.9069 16 8 7.0522 -2.9977 -5.3526 17 6 9.1459 -4.0531 -5.6210 18 16 8.3611 -4.7441 -7.0984 19 6 9.6872 -5.7244 -7.7191 20 1 10.6296 -5.7536 -7.1926 21 6 9.5205 -6.4590 -8.8850 22 7 8.3719 -6.4230 -9.5271 23 14 10.9266 -7.4977 -9.5435 24 1 10.4963 -8.1795 -10.7906 25 1 12.0930 -6.6254 -9.8327 26 1 11.3077 -8.5142 -8.5304 27 6 7.6859 -1.6233 -2.9764 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.6887 1.8464 0.8900 32 1 1.6886 1.8465 -0.8899 33 1 6.4880 1.0842 1.0186 34 1 6.5420 1.7652 -0.6251 35 1 6.5821 -1.3223 1.3197 36 1 4.9908 -1.3408 0.5227 37 1 6.3035 -2.3767 -0.0869 38 1 8.4756 -0.4093 0.1858 39 1 8.2642 0.4711 -1.3467 40 1 10.2166 -0.7718 -2.0367 41 1 10.3294 -2.2522 -1.0292 42 1 10.0507 -3.6700 -2.8570 43 1 10.6272 -2.2618 -3.7917 44 1 9.4474 -4.8630 -4.9568 45 1 10.0238 -3.4764 -5.9125 46 1 8.2556 -6.9361 -10.3420 47 1 7.7344 -0.6088 -3.3722 48 1 6.6556 -1.9791 -2.9717 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691950343.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:36 Heat of formation + Delta-G solvation = -44.402229 kcal Electronic energy + Delta-G solvation = -25985.477215 eV Core-core repulsion = 22167.509308 eV Total energy + Delta-G solvation = -3817.967907 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.08981 -39.35628 -38.94601 -37.85979 -34.63956 -34.58799 -33.22311 -30.87706 -30.51278 -29.57187 -28.16584 -27.72806 -27.12276 -26.13416 -24.49675 -22.86784 -21.07212 -20.66534 -19.56531 -18.36997 -18.02507 -17.59697 -17.45056 -16.93216 -16.88744 -16.73672 -16.48197 -16.30089 -16.16043 -15.72230 -15.45676 -14.67751 -14.49477 -14.39295 -14.25816 -14.00481 -13.79404 -13.59500 -13.53075 -13.42990 -13.23146 -13.15938 -12.86328 -12.76279 -12.63262 -12.56128 -12.38286 -12.06919 -11.95876 -11.73688 -11.48489 -11.26737 -11.13145 -11.12805 -10.96573 -10.47062 -10.29492 -9.66649 -9.30223 -8.69558 -8.34647 -6.14239 1.23947 1.28841 1.44292 1.45024 1.55470 1.56720 1.64800 2.12933 2.27329 2.91923 2.98970 2.99061 3.25630 3.49792 3.61655 3.65728 3.82650 3.97229 4.19243 4.20484 4.24575 4.32480 4.34671 4.39278 4.42821 4.43584 4.48294 4.51486 4.55868 4.58422 4.66118 4.72354 4.73156 4.79727 4.83462 4.85133 4.94158 5.02337 5.06960 5.14594 5.33223 5.40578 5.45404 5.98938 6.06364 6.12499 6.19151 6.42832 6.56395 7.05671 7.12850 8.74556 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013783 B = 0.001899 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.063448 B =14744.049592 C =16418.617840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.420 6.420 3 C 0.174 3.826 4 C -0.214 4.214 5 C -0.155 4.155 6 C 0.167 3.833 7 N -0.562 5.562 8 C 0.027 3.973 9 C 0.074 3.926 10 C -0.088 4.088 11 H 0.083 0.917 12 C -0.108 4.108 13 C 0.087 3.913 14 N -0.620 5.620 15 C 0.542 3.458 16 O -0.572 6.572 17 C -0.117 4.117 18 S -0.155 6.155 19 C -0.546 4.546 20 H 0.084 0.916 21 C 0.012 3.988 22 N -0.912 5.912 23 Si 1.002 2.998 24 H -0.278 1.278 25 H -0.261 1.261 26 H -0.261 1.261 27 C 0.121 3.879 28 H 0.055 0.945 29 H 0.092 0.908 30 H 0.062 0.938 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.116 0.884 35 H 0.046 0.954 36 H 0.048 0.952 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.111 0.889 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.106 0.894 45 H 0.107 0.893 46 H 0.271 0.729 47 H 0.066 0.934 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.334 17.993 28.110 33.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.341 6.341 3 C 0.099 3.901 4 C -0.216 4.216 5 C -0.156 4.156 6 C 0.041 3.959 7 N -0.286 5.286 8 C -0.121 4.121 9 C -0.053 4.053 10 C -0.107 4.107 11 H 0.101 0.899 12 C -0.146 4.146 13 C -0.034 4.034 14 N -0.355 5.355 15 C 0.330 3.670 16 O -0.451 6.451 17 C -0.268 4.268 18 S 0.072 5.928 19 C -0.694 4.694 20 H 0.102 0.898 21 C -0.193 4.193 22 N -0.548 5.548 23 Si 0.823 3.177 24 H -0.203 1.203 25 H -0.185 1.185 26 H -0.186 1.186 27 C -0.001 4.001 28 H 0.073 0.927 29 H 0.111 0.889 30 H 0.081 0.919 31 H 0.113 0.887 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.134 0.866 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.113 0.887 40 H 0.117 0.883 41 H 0.129 0.871 42 H 0.093 0.907 43 H 0.097 0.903 44 H 0.124 0.876 45 H 0.125 0.875 46 H 0.080 0.920 47 H 0.085 0.915 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.210 17.913 26.805 32.399 hybrid contribution 1.397 -0.694 0.275 1.583 sum -1.814 17.219 27.080 32.142 Atomic orbital electron populations 1.22983 0.78370 1.04050 1.01602 1.87933 1.22278 1.28074 1.95785 1.19276 0.82669 0.85203 1.02965 1.22436 0.94046 1.02571 1.02503 1.22811 0.94520 0.97693 1.00531 1.19172 0.83674 0.92207 1.00892 1.61811 1.16194 1.02612 1.48009 1.22366 1.00214 0.94778 0.94754 1.22104 0.85650 0.97517 1.00071 1.22352 0.95963 0.99407 0.92985 0.89878 1.22683 0.94657 1.01352 0.95953 1.22398 0.83648 1.01868 0.95531 1.48555 1.16712 1.46607 1.23621 1.19833 0.87308 0.79784 0.80095 1.90684 1.23375 1.64535 1.66507 1.23291 1.01452 1.01405 1.00700 1.85636 1.22949 1.58902 1.25277 1.23159 1.00284 1.32569 1.13408 0.89820 1.26186 0.99659 0.97644 0.95784 1.70193 1.26000 1.40902 1.17728 0.84964 0.77278 0.77920 0.77574 1.20344 1.18503 1.18571 1.22198 0.94092 0.92902 0.90927 0.92675 0.88924 0.91895 0.88667 0.89626 0.90135 0.86640 0.93507 0.93294 0.91464 0.91080 0.88734 0.88291 0.87072 0.90661 0.90279 0.87627 0.87497 0.91961 0.91550 0.93588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.42 -8.74 10.66 -148.98 -1.59 -10.33 16 3 C 0.17 2.84 6.41 70.17 0.45 3.29 16 4 C -0.21 -4.61 13.73 31.12 0.43 -4.18 16 5 C -0.15 -3.14 12.38 31.12 0.39 -2.76 16 6 C 0.17 2.27 5.46 84.50 0.46 2.73 16 7 N -0.56 -9.18 4.56 -933.66 -4.26 -13.44 16 8 C 0.03 0.45 9.16 127.69 1.17 1.62 16 9 C 0.07 0.80 4.41 86.30 0.38 1.18 16 10 C -0.09 -1.33 2.89 -9.40 -0.03 -1.36 16 11 H 0.08 1.37 6.54 -2.39 -0.02 1.35 16 12 C -0.11 -1.17 6.42 31.78 0.20 -0.96 16 13 C 0.09 1.67 6.48 86.73 0.56 2.23 16 14 N -0.62 -18.67 3.33 -811.80 -2.70 -21.38 16 15 C 0.54 22.69 7.87 87.66 0.69 23.38 16 16 O -0.57 -29.78 16.12 -3.01 -0.05 -29.83 16 17 C -0.12 -5.04 5.35 71.24 0.38 -4.66 16 18 S -0.15 -9.02 20.57 -56.49 -1.16 -10.18 16 19 C -0.55 -32.02 9.50 67.96 0.65 -31.37 16 20 H 0.08 4.52 7.80 -2.92 -0.02 4.50 16 21 C 0.01 0.69 5.49 84.86 0.47 1.16 16 22 N -0.91 -57.26 13.22 21.65 0.29 -56.97 16 23 Si 1.00 44.19 29.55 68.60 2.03 46.22 16 24 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 25 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 26 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 27 C 0.12 3.15 6.21 86.86 0.54 3.69 16 28 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 31 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.08 0.75 8.12 -2.39 -0.02 0.73 16 34 H 0.12 1.18 7.93 -2.39 -0.02 1.16 16 35 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.05 1.03 7.17 -2.39 -0.02 1.01 16 37 H 0.07 1.20 6.45 -2.39 -0.02 1.18 16 38 H 0.07 0.45 8.12 -2.39 -0.02 0.43 16 39 H 0.09 0.84 7.89 -2.39 -0.02 0.82 16 40 H 0.10 0.75 8.04 -2.39 -0.02 0.73 16 41 H 0.11 0.67 8.14 -2.38 -0.02 0.65 16 42 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.11 4.12 8.14 -2.39 -0.02 4.10 16 45 H 0.11 4.15 8.14 -2.39 -0.02 4.13 16 46 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 47 H 0.07 1.70 8.00 -2.38 -0.02 1.68 16 48 H 0.05 1.52 8.03 -2.39 -0.02 1.50 16 Total: -1.00 -87.00 414.07 1.47 -85.53 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 0.93 Total: 14.83 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: 7.98 Total: -4.45 kcal Atomic # 7 Polarization: -85.11 SS G_CDS: -6.67 Total: -91.79 kcal Atomic # 8 Polarization: -38.52 SS G_CDS: -1.64 Total: -40.16 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 16 Polarization: -9.02 SS G_CDS: -1.16 Total: -10.18 kcal Total: -87.00 1.47 -85.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691950343.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.125 kcal (2) G-P(sol) polarization free energy of solvation -86.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds