Wall clock time and date at job start Sat Apr 11 2020 06:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46898 * 2 1 4 4 O 1.42898 * 109.46770 * 119.99168 * 2 1 3 5 5 C 1.42901 * 114.00480 * 270.00073 * 4 2 1 6 6 C 1.50697 * 109.47191 * 180.02562 * 5 4 2 7 7 C 1.38241 * 119.97433 * 89.99768 * 6 5 4 8 8 C 1.38205 * 120.02377 * 179.74187 * 7 6 5 9 9 C 1.38455 * 119.97496 * 0.26259 * 8 7 6 10 10 F 1.35097 * 120.02414 * 180.02562 * 9 8 7 11 11 C 1.38464 * 119.95049 * 359.97438 * 9 8 7 12 12 C 1.38201 * 119.97214 * 0.02562 * 11 9 8 13 13 C 1.50699 * 109.47185 * 239.99556 * 2 1 3 14 14 O 1.21272 * 119.99905 * 244.99864 * 13 2 1 15 15 N 1.34777 * 119.99824 * 64.99763 * 13 2 1 16 16 C 1.46499 * 119.99737 * 179.97438 * 15 13 2 17 17 C 1.53004 * 109.47030 * 180.02562 * 16 15 13 18 18 H 1.09004 * 109.46767 * 65.00665 * 17 16 15 19 19 C 1.52999 * 109.47087 * 185.00066 * 17 16 15 20 20 O 1.42902 * 109.47075 * 54.99875 * 19 17 16 21 21 N 1.46494 * 109.47079 * 305.00381 * 17 16 15 22 22 C 1.36933 * 119.99998 * 155.00201 * 21 17 16 23 23 H 1.07998 * 120.00198 * 359.97438 * 22 21 17 24 24 C 1.38819 * 120.00116 * 179.97438 * 22 21 17 25 25 N 1.31613 * 119.99709 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99913 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47015 * 90.00065 * 26 24 22 28 28 H 1.48504 * 109.46971 * 210.00078 * 26 24 22 29 29 H 1.48495 * 109.47253 * 329.99702 * 26 24 22 30 30 H 1.09004 * 109.47118 * 60.00407 * 1 2 3 31 31 H 1.08994 * 109.47026 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47221 * 300.00414 * 1 2 3 33 33 H 1.09002 * 109.46929 * 60.00194 * 5 4 2 34 34 H 1.08994 * 109.46774 * 300.00537 * 5 4 2 35 35 H 1.08002 * 119.99029 * 0.02809 * 7 6 5 36 36 H 1.08004 * 120.00758 * 180.27782 * 8 7 6 37 37 H 1.07993 * 120.01407 * 180.02562 * 11 9 8 38 38 H 1.07996 * 119.98812 * 180.02562 * 12 11 9 39 39 H 0.97001 * 119.99962 * 0.02562 * 15 13 2 40 40 H 1.09001 * 109.47495 * 300.00541 * 16 15 13 41 41 H 1.09001 * 109.47157 * 60.00644 * 16 15 13 42 42 H 1.08996 * 109.47280 * 174.99987 * 19 17 16 43 43 H 1.08996 * 109.47389 * 295.00413 * 19 17 16 44 44 H 0.96701 * 114.00561 * 179.97438 * 20 19 17 45 45 H 0.97000 * 120.00157 * 334.99386 * 21 17 16 46 46 H 0.97005 * 119.99785 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 2.2000 0.1832 2.2941 6 6 2.7013 -0.6279 3.4611 7 6 4.0599 -0.7997 3.6500 8 6 4.5209 -1.5389 4.7230 9 6 3.6213 -2.1119 5.6057 10 9 4.0708 -2.8342 6.6552 11 6 2.2606 -1.9433 5.4128 12 6 1.8019 -1.2037 4.3392 13 6 2.0324 -0.7105 -1.2304 14 8 2.6530 -1.7467 -1.1213 15 7 1.7919 -0.1943 -2.4520 16 6 2.2807 -0.8848 -3.6480 17 6 1.8764 -0.0944 -4.8942 18 1 2.3820 0.8712 -4.8918 19 6 2.2770 -0.8767 -6.1465 20 8 1.7075 -2.1863 -6.0926 21 7 0.4263 0.1135 -4.8913 22 6 -0.1146 1.1744 -5.5673 23 1 0.5278 1.8581 -6.1023 24 6 -1.4888 1.3711 -5.5650 25 7 -2.2718 0.5377 -4.9135 26 14 -2.2267 2.8180 -6.4879 27 1 -2.5374 2.4098 -7.8814 28 1 -3.4740 3.2534 -5.8097 29 1 -1.2553 3.9410 -6.5059 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.2537 0.6549 2.5588 34 1 2.9318 0.9515 2.0450 35 1 4.7615 -0.3523 2.9615 36 1 5.5825 -1.6692 4.8728 37 1 1.5580 -2.3894 6.1009 38 1 0.7407 -1.0716 4.1886 39 1 1.2958 0.6346 -2.5391 40 1 3.3671 -0.9626 -3.6042 41 1 1.8465 -1.8835 -3.6941 42 1 1.9107 -0.3574 -7.0320 43 1 3.3631 -0.9547 -6.1943 44 1 1.9202 -2.7395 -6.8566 45 1 -0.1508 -0.5004 -4.4106 46 1 -3.2321 0.6749 -4.9122 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700805024.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:46 Heat of formation + Delta-G solvation = -139.816189 kcal Electronic energy + Delta-G solvation = -28855.650752 eV Core-core repulsion = 24467.332209 eV Total energy + Delta-G solvation = -4388.318543 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.16809 -39.88572 -39.30852 -37.63873 -36.90513 -34.87408 -33.54122 -32.49638 -31.45816 -31.44576 -30.47759 -28.28530 -26.22146 -25.53649 -23.82011 -23.38471 -23.25675 -21.76194 -20.15076 -19.87126 -17.99503 -17.74113 -17.14378 -17.00560 -16.71070 -16.61887 -15.85367 -15.83067 -15.48081 -15.30231 -14.87823 -14.49092 -14.33990 -14.02151 -13.85797 -13.75225 -13.44563 -13.37541 -13.08303 -12.99285 -12.87203 -12.48024 -12.36542 -12.21815 -11.96538 -11.69382 -11.42528 -11.30957 -11.15534 -10.90815 -10.88977 -10.58534 -10.13985 -9.96757 -9.82123 -9.41646 -9.39878 -9.25600 -9.01636 -8.92935 -8.58032 -7.07593 -5.85338 -3.15709 0.75530 0.94531 2.91185 2.98011 3.35654 3.40952 3.42356 3.43234 3.95826 4.06105 4.38086 4.48791 4.54791 4.63621 4.81548 4.87857 4.91307 4.93736 5.03231 5.10782 5.17299 5.27519 5.38626 5.49375 5.54813 5.60462 5.67527 5.74569 5.75328 5.81026 5.88314 5.91941 6.00756 6.03419 6.20574 6.26329 6.34922 6.49009 6.56846 6.72890 6.86503 7.01386 7.58734 7.94818 8.19384 8.31628 8.60251 9.43991 9.99258 10.36066 11.36031 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017000 B = 0.002084 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.681287 B =13431.257240 C =14533.480668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.072 3.928 3 H 0.084 0.916 4 O -0.350 6.350 5 C 0.099 3.901 6 C -0.096 4.096 7 C -0.066 4.066 8 C -0.157 4.157 9 C 0.101 3.899 10 F -0.141 7.141 11 C -0.158 4.158 12 C -0.067 4.067 13 C 0.511 3.489 14 O -0.533 6.533 15 N -0.710 5.710 16 C 0.120 3.880 17 C 0.166 3.834 18 H 0.066 0.934 19 C 0.059 3.941 20 O -0.560 6.560 21 N -0.713 5.713 22 C -0.248 4.248 23 H 0.070 0.930 24 C -0.008 4.008 25 N -0.925 5.925 26 Si 0.905 3.095 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.409 0.591 40 H 0.060 0.940 41 H 0.076 0.924 42 H 0.048 0.952 43 H 0.026 0.974 44 H 0.364 0.636 45 H 0.389 0.611 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.096 0.378 16.143 19.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.011 3.989 3 H 0.102 0.898 4 O -0.269 6.269 5 C 0.023 3.977 6 C -0.097 4.097 7 C -0.084 4.084 8 C -0.176 4.176 9 C 0.082 3.918 10 F -0.120 7.120 11 C -0.176 4.176 12 C -0.085 4.085 13 C 0.296 3.704 14 O -0.410 6.410 15 N -0.364 5.364 16 C -0.004 4.004 17 C 0.054 3.946 18 H 0.083 0.917 19 C -0.022 4.022 20 O -0.363 6.363 21 N -0.355 5.355 22 C -0.379 4.379 23 H 0.088 0.912 24 C -0.205 4.205 25 N -0.572 5.572 26 Si 0.736 3.264 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.102 0.898 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.153 0.847 36 H 0.154 0.846 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.245 0.755 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.067 0.933 43 H 0.045 0.955 44 H 0.209 0.791 45 H 0.224 0.776 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 11.305 -0.197 16.759 20.217 hybrid contribution -0.680 0.871 -0.972 1.472 sum 10.625 0.674 15.788 19.042 Atomic orbital electron populations 1.22243 0.92965 1.04132 1.03568 1.21930 0.95513 0.96050 0.85404 0.89784 1.88128 1.86619 1.33643 1.18491 1.21388 0.99931 0.91634 0.84771 1.19655 0.93507 1.00370 0.96130 1.20966 0.95177 0.96330 0.95936 1.21143 1.00126 1.00508 0.95838 1.17776 0.92824 0.94808 0.86408 1.91500 1.89894 1.75494 1.55082 1.21141 0.93825 1.02297 1.00382 1.20963 1.00196 0.94578 0.92792 1.20224 0.80167 0.85654 0.84390 1.90688 1.40346 1.23277 1.86651 1.45905 1.57190 1.28269 1.05015 1.21542 0.98024 0.97282 0.83543 1.20596 0.88260 0.95247 0.90454 0.91660 1.23029 0.94109 0.84146 1.00925 1.86572 1.77356 1.25465 1.46937 1.42374 0.99507 1.31981 1.61598 1.19209 0.90512 1.02889 1.25285 0.91219 1.24745 0.96154 0.98873 1.00685 1.69676 1.03648 1.37885 1.45997 0.86235 0.78682 0.82042 0.79408 1.21784 1.21784 1.20793 0.89781 0.91044 0.91629 0.91907 0.92088 0.84730 0.84571 0.84563 0.84679 0.75494 0.92157 0.90561 0.93329 0.95539 0.79137 0.77642 0.93422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 9.48 37.16 0.35 -1.81 16 2 C 0.07 0.96 3.13 -27.88 -0.09 0.87 16 3 H 0.08 0.88 7.79 -51.93 -0.40 0.47 16 4 O -0.35 -4.89 9.51 -55.09 -0.52 -5.42 16 5 C 0.10 0.98 5.87 36.00 0.21 1.19 16 6 C -0.10 -0.97 5.51 -104.62 -0.58 -1.54 16 7 C -0.07 -0.63 9.70 -39.59 -0.38 -1.01 16 8 C -0.16 -1.46 10.03 -39.51 -0.40 -1.85 16 9 C 0.10 1.01 7.30 -39.42 -0.29 0.72 16 10 F -0.14 -1.49 17.27 2.25 0.04 -1.45 16 11 C -0.16 -1.44 10.03 -39.51 -0.40 -1.83 16 12 C -0.07 -0.62 9.70 -39.59 -0.38 -1.00 16 13 C 0.51 8.71 7.18 -10.99 -0.08 8.63 16 14 O -0.53 -11.17 16.51 -14.30 -0.24 -11.40 16 15 N -0.71 -11.74 5.35 -60.29 -0.32 -12.07 16 16 C 0.12 2.11 5.12 -4.04 -0.02 2.09 16 17 C 0.17 3.05 2.84 -67.93 -0.19 2.85 16 18 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 19 C 0.06 1.01 6.86 37.16 0.25 1.26 16 20 O -0.56 -9.90 12.64 -35.23 -0.45 -10.34 16 21 N -0.71 -16.39 4.51 -53.43 -0.24 -16.63 16 22 C -0.25 -6.30 9.93 -15.06 -0.15 -6.45 16 23 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 24 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 25 N -0.92 -26.44 13.06 55.49 0.72 -25.72 16 26 Si 0.91 21.13 29.55 -169.99 -5.02 16.11 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 28 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 29 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 30 H 0.08 1.13 7.93 -51.93 -0.41 0.72 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.06 0.66 7.87 -51.93 -0.41 0.25 16 33 H 0.06 0.50 7.82 -51.93 -0.41 0.10 16 34 H 0.06 0.50 8.03 -51.93 -0.42 0.09 16 35 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 36 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 37 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 38 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 39 H 0.41 6.57 7.92 -40.82 -0.32 6.24 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.08 1.53 7.39 -51.93 -0.38 1.15 16 42 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.36 4.63 9.12 45.56 0.42 5.05 16 45 H 0.39 9.98 7.80 -40.82 -0.32 9.66 16 46 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 398.55 15.07 6.01 6.01 Total: -1.00 -33.32 398.55 -8.26 -41.58 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: -6.01 Total: 17.52 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: -2.23 Total: 1.81 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: 0.16 Total: -54.41 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: -1.21 Total: -27.16 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.32 -8.26 -41.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700805024.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.232 kcal (2) G-P(sol) polarization free energy of solvation -33.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds